JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ADCYAP1R1_chr7_31047308_31116474	HG01167	hp1	a0001	a0001c0001	a0001c0001t0009	a0001c0001t0009g0291	PUR	AMR	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	HG01167	hp2	a0001	a0001c0001	a0001c0001t0009	a0001c0001t0009g0228	PUR	AMR	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1_chr18_899871_917172	HG01167	hp1	a0001	a0001c0003	a0001c0003t0027	a0001c0003t0027g0197	PUR	AMR	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	HG01167	hp2	a0001	a0001c0003	a0001c0003t0024	a0001c0003t0024g0033	PUR	AMR	ADCYAP1	chr18	899871	917172
ADD1_chr4_2838844_2935062	HG01167	hp1	a0001	a0001c0001	a0001c0001t0016	a0001c0001t0016g0222	PUR	AMR	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	HG01167	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0194	PUR	AMR	ADD1	chr4	2838844	2935062
ADD2_chr2_70651784_70773200	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0068	PUR	AMR	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	HG01167	hp2	a0002	a0002c0002	a0002c0002t0022	a0002c0002t0022g0054	PUR	AMR	ADD2	chr2	70651784	70773200
ADD3_chr10_110002984_110140565	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0140	PUR	AMR	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0212	PUR	AMR	ADD3	chr10	110002984	110140565
ADGB_chr6_146593972_146820462	HG01167	hp1	a0003	a0003c0005	a0003c0005t0001	a0003c0005t0001g0199	PUR	AMR	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	HG01167	hp2	a0005	a0005c0007	a0005c0007t0001	a0005c0007t0001g0072	PUR	AMR	ADGB	chr6	146593972	146820462
ADGRA1_chr10_133082924_133136675	HG01167	hp1	a0001	a0001c0004	a0001c0004t0032	a0001c0004t0032g0009	PUR	AMR	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	HG01167	hp2	a0001	a0001c0003	a0001c0003t0004	a0001c0003t0004g0233	PUR	AMR	ADGRA1	chr10	133082924	133136675
ADGRA2_chr8_37791883_37849896	HG01167	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0166	PUR	AMR	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	HG01167	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0053	PUR	AMR	ADGRA2	chr8	37791883	37849896
ADGRB1_chr8_142444649_142550007	HG01167	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0003	PUR	AMR	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0229	PUR	AMR	ADGRB1	chr8	142444649	142550007
ADGRB2_chr1_31722117_31769340	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0166	PUR	AMR	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	HG01167	hp2	a0001	a0001c0024	a0001c0024t0001	a0001c0024t0001g0111	PUR	AMR	ADGRB2	chr1	31722117	31769340
ADGRB3_chr6_68630282_69394506	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0101	PUR	AMR	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	HG01167	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0032	PUR	AMR	ADGRB3	chr6	68630282	69394506
ADGRD1_chr12_130948907_131146469	HG01167	hp1	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0127	PUR	AMR	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	HG01167	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0146	PUR	AMR	ADGRD1	chr12	130948907	131146469
ADGRD2_chr9_124445451_124483580	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	HG01167	hp2	a0023	a0023c0029	a0023c0029t0001	a0023c0029t0001g0002	PUR	AMR	ADGRD2	chr9	124445451	124483580
ADGRE1_chr19_6882579_6945450	HG01167	hp1	a0019	a0019c0019	a0019c0019t0003	a0019c0019t0003g0040	PUR	AMR	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	HG01167	hp2	a0004	a0004c0004	a0004c0004t0001	a0004c0004t0001g0186	PUR	AMR	ADGRE1	chr19	6882579	6945450
ADGRE3_chr19_14614117_14679844	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0093	PUR	AMR	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	HG01167	hp2	a0003	a0003c0002	a0003c0002t0001	a0003c0002t0001g0056	PUR	AMR	ADGRE3	chr19	14614117	14679844
ADGRE5_chr19_14376444_14413723	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0291	PUR	AMR	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	HG01167	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0017	PUR	AMR	ADGRE5	chr19	14376444	14413723
ADGRF1_chr6_46992708_47047332	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0183	PUR	AMR	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0225	PUR	AMR	ADGRF1	chr6	46992708	47047332
ADGRF3_chr2_26303175_26351789	HG01167	hp1	a0010	a0010c0012	a0010c0012t0001	a0010c0012t0001g0200	PUR	AMR	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	HG01167	hp2	a0008	a0008c0008	a0008c0008t0002	a0008c0008t0002g0271	PUR	AMR	ADGRF3	chr2	26303175	26351789
ADGRF4_chr6_47693580_47727014	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0006	PUR	AMR	ADGRF4	chr6	47693580	47727014
ADGRF5_chr6_46847522_46926938	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0323	PUR	AMR	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	HG01167	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0123	PUR	AMR	ADGRF5	chr6	46847522	46926938
ADGRG1_chr16_57623630_57670567	HG01167	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0292	PUR	AMR	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	HG01167	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0018	PUR	AMR	ADGRG1	chr16	57623630	57670567
ADGRG2_chrX_18984307_19127468	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0135	PUR	AMR	ADGRG2	chrX	18984307	19127468
ADGRG3_chr16_57663306_57694378	HG01167	hp1	a0001	a0001c0001	a0001c0001t0011	a0001c0001t0011g0132	PUR	AMR	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0144	PUR	AMR	ADGRG3	chr16	57663306	57694378
ADGRG4_chrX_136295963_136421890	HG01167	hp1	a0008	a0008c0008	a0008c0008t0001	a0008c0008t0001g0185	PUR	AMR	ADGRG4	chrX	136295963	136421890
ADGRG7_chr3_100604601_100700479	HG01167	hp1	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0236	PUR	AMR	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	HG01167	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0294	PUR	AMR	ADGRG7	chr3	100604601	100700479
ADGRL1_chr19_14142743_14211169	HG01167	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0206	PUR	AMR	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0083	PUR	AMR	ADGRL1	chr19	14142743	14211169