JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
GZMK_chr5_55019256_55039570	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	HG01167	hp2	a0001	a0001c0004	a0001c0004t0003	a0001c0004t0003g0008	PUR	AMR	GZMK	chr5	55019256	55039570
GZMM_chr19_539053_554922	HG01167	hp1	a0008	a0008c0017	a0008c0017t0001	a0008c0017t0001g0049	PUR	AMR	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0027	PUR	AMR	GZMM	chr19	539053	554922
H1-0_chr22_37800229_37812432	HG01167	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0000	PUR	AMR	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	HG01167	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0000	PUR	AMR	H1-0	chr22	37800229	37812432
H1-10_chr3_129309771_129321286	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	PUR	AMR	H1-10	chr3	129309771	129321286
H1-2_chr6_26050740_26061470	HG01167	hp1	a0002	a0002c0001	a0002c0001t0001	a0002c0001t0001g0000	PUR	AMR	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	HG01167	hp2	a0015	a0015c0024	a0015c0024t0001	a0015c0024t0001g0000	PUR	AMR	H1-2	chr6	26050740	26061470
H1-3_chr6_26229212_26239987	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H1-3	chr6	26229212	26239987
H1-4_chr6_26151329_26162115	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H1-4	chr6	26151329	26162115
H1-5_chr6_27861792_27872588	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H1-5	chr6	27861792	27872588
H1-6_chr6_26102412_26113135	HG01167	hp1	a0002	a0002c0005	a0002c0005t0001	a0002c0005t0001g0000	PUR	AMR	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	HG01167	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0000	PUR	AMR	H1-6	chr6	26102412	26113135
H1-8_chr3_129538175_129556467	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0051	PUR	AMR	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	HG01167	hp2	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0072	PUR	AMR	H1-8	chr3	129538175	129556467
H2AB1_chrX_154879972_154890558	HG01167	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0000	PUR	AMR	H2AB1	chrX	154879972	154890558
H2AB2_chrX_155375709_155386299	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AB2	chrX	155375709	155386299
H2AB3_chrX_155454415_155465005	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AB3	chrX	155454415	155465005
H2AC11_chr6_27128043_27138535	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC11	chr6	27128043	27138535
H2AC11_chr6_27128043_27138535	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC11	chr6	27128043	27138535
H2AC13_chr6_27803173_27813667	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC13	chr6	27803173	27813667
H2AC13_chr6_27803173_27813667	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC13	chr6	27803173	27813667
H2AC16_chr6_27860317_27870798	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC16	chr6	27860317	27870798
H2AC16_chr6_27860317_27870798	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC16	chr6	27860317	27870798
H2AC18_chr1_149837218_149847750	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC18	chr1	149837218	149847750
H2AC1_chr6_25721063_25731562	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	PUR	AMR	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	HG01167	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0000	PUR	AMR	H2AC1	chr6	25721063	25731562
H2AC20_chr1_149881918_149892411	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC20	chr1	149881918	149892411
H2AC20_chr1_149881918_149892411	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC20	chr1	149881918	149892411
H2AC21_chr1_149882469_149892965	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC21	chr1	149882469	149892965
H2AC21_chr1_149882469_149892965	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC21	chr1	149882469	149892965
H2AC25_chr1_228452364_228462873	HG01167	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0000	PUR	AMR	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC25	chr1	228452364	228462873
H2AC4_chr6_26028092_26038618	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	PUR	AMR	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	PUR	AMR	H2AC4	chr6	26028092	26038618
H2AC6_chr6_26119172_26129690	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC6	chr6	26119172	26129690
H2AC6_chr6_26119172_26129690	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AC6	chr6	26119172	26129690
H2AJ_chr12_14769405_14780024	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AJ	chr12	14769405	14780024
H2AL3_chrX_37989272_37999904	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AL3	chrX	37989272	37999904
H2AP_chrX_37985779_37996314	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	H2AP	chrX	37985779	37996314
H2AX_chr11_119088874_119100465	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	PUR	AMR	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	HG01167	hp2	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0000	PUR	AMR	H2AX	chr11	119088874	119100465
H2AZ1_chr4_99943088_99955275	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	H2AZ1	chr4	99943088	99955275