JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABCA10_chr17_69143007_69233824	HG01167	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0114	PUR	AMR	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	HG01167	hp2	a0004	a0004c0004	a0004c0004t0003	a0004c0004t0003g0237	PUR	AMR	ABCA10	chr17	69143007	69233824
ABCA13_chr7_48166458_48652497	HG01167	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0156	PUR	AMR	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	HG01167	hp2	a0020	a0020c0109	a0020c0109t0001	a0020c0109t0001g0120	PUR	AMR	ABCA13	chr7	48166458	48652497
ABCA2_chr9_137002234_137033237	HG01167	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0001	PUR	AMR	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABCA2	chr9	137002234	137033237
ABCA3_chr16_2270881_2345728	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0158	PUR	AMR	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	HG01167	hp2	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0170	PUR	AMR	ABCA3	chr16	2270881	2345728
ABCA5_chr17_69239311_69332133	HG01167	hp1	a0003	a0003c0003	a0003c0003t0003	a0003c0003t0003g0001	PUR	AMR	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	HG01167	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0079	PUR	AMR	ABCA5	chr17	69239311	69332133
ABCA6_chr17_69073702_69146895	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	HG01167	hp2	a0004	a0004c0004	a0004c0004t0002	a0004c0004t0002g0148	PUR	AMR	ABCA6	chr17	69073702	69146895
ABCA8_chr17_68862289_68960392	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0053	PUR	AMR	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0253	PUR	AMR	ABCA8	chr17	68862289	68960392
ABCA9_chr17_68969488_69065927	HG01167	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0122	PUR	AMR	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	HG01167	hp2	a0010	a0010c0012	a0010c0012t0001	a0010c0012t0001g0273	PUR	AMR	ABCA9	chr17	68969488	69065927
ABCB10_chr1_229511582_229563707	HG01167	hp1	a0003	a0003c0013	a0003c0013t0002	a0003c0013t0002g0261	PUR	AMR	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0161	PUR	AMR	ABCB10	chr1	229511582	229563707
ABCB1_chr7_87498017_87605884	HG01167	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0001	PUR	AMR	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	HG01167	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0163	PUR	AMR	ABCB1	chr7	87498017	87605884
ABCB4_chr7_87396696_87480680	HG01167	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0161	PUR	AMR	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	HG01167	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0004	PUR	AMR	ABCB4	chr7	87396696	87480680
ABCB7_chrX_75046048_75161283	HG01167	hp1	a0001	a0001c0001	a0001c0001t0025	a0001c0001t0025g0103	PUR	AMR	ABCB7	chrX	75046048	75161283
ABCB8_chr7_151023450_151052782	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	HG01167	hp2	a0001	a0001c0006	a0001c0006t0007	a0001c0006t0007g0010	PUR	AMR	ABCB8	chr7	151023450	151052782
ABCC2_chr10_99777640_99857594	HG01167	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0224	PUR	AMR	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	HG01167	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0090	PUR	AMR	ABCC2	chr10	99777640	99857594
ABCC3_chr17_50629881_50697253	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0330	PUR	AMR	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0054	PUR	AMR	ABCC3	chr17	50629881	50697253
ABCC5_chr3_183914934_184022884	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	PUR	AMR	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	HG01167	hp2	a0001	a0001c0004	a0001c0004t0004	a0001c0004t0004g0133	PUR	AMR	ABCC5	chr3	183914934	184022884
ABCD1_chrX_153719856_153749755	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABCD1	chrX	153719856	153749755
ABCD2_chr12_39545033_39624803	HG01167	hp1	a0003	a0003c0005	a0003c0005t0011	a0003c0005t0011g0027	PUR	AMR	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0203	PUR	AMR	ABCD2	chr12	39545033	39624803
ABCD3_chr1_94413389_94523663	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0074	PUR	AMR	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	HG01167	hp2	a0001	a0001c0001	a0001c0001t0013	a0001c0001t0013g0204	PUR	AMR	ABCD3	chr1	94413389	94523663
ABCD4_chr14_74280269_74307934	HG01167	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0105	PUR	AMR	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	HG01167	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0003	PUR	AMR	ABCD4	chr14	74280269	74307934
ABCF1_chr6_30566442_30596522	HG01167	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0001	PUR	AMR	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	HG01167	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0019	PUR	AMR	ABCF1	chr6	30566442	30596522
ABCF3_chr3_184181199_184199005	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABCF3	chr3	184181199	184199005
ABCG1_chr21_42214140_42302244	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0327	PUR	AMR	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	HG01167	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0092	PUR	AMR	ABCG1	chr21	42214140	42302244
ABCG2_chr4_88085269_88163639	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0137	PUR	AMR	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0124	PUR	AMR	ABCG2	chr4	88085269	88163639
ABCG4_chr11_119144052_119167653	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0005	PUR	AMR	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABCG4	chr11	119144052	119167653
ABCG5_chr2_43807472_43843839	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0020	PUR	AMR	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0021	PUR	AMR	ABCG5	chr2	43807472	43843839