JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABCG8_chr2_43833971_43887988	HG01167	hp1	a0004	a0004c0007	a0004c0007t0007	a0004c0007t0007g0143	PUR	AMR	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	HG01167	hp2	a0003	a0003c0002	a0003c0002t0110	a0003c0002t0110g0283	PUR	AMR	ABCG8	chr2	43833971	43887988
ABHD10_chr3_111974026_111998368	HG01167	hp1	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0081	PUR	AMR	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0013	PUR	AMR	ABHD10	chr3	111974026	111998368
ABHD11_chr7_73731094_73743802	HG01167	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0002	PUR	AMR	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	HG01167	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0003	PUR	AMR	ABHD11	chr7	73731094	73743802
ABHD12B_chr14_50867053_50909970	HG01167	hp1	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0064	PUR	AMR	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	HG01167	hp2	a0006	a0006c0010	a0006c0010t0001	a0006c0010t0001g0012	PUR	AMR	ABHD12B	chr14	50867053	50909970
ABHD12_chr20_25295214_25395835	HG01167	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0213	PUR	AMR	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	HG01167	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0276	PUR	AMR	ABHD12	chr20	25295214	25395835
ABHD14A_chr3_51970064_51986196	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	PUR	AMR	ABHD14A	chr3	51970064	51986196
ABHD15_chr17_29555547_29572037	HG01167	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0006	PUR	AMR	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0004	PUR	AMR	ABHD15	chr17	29555547	29572037
ABHD16A_chr6_31681955_31708324	HG01167	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0053	PUR	AMR	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0137	PUR	AMR	ABHD16A	chr6	31681955	31708324
ABHD16B_chr20_63856498_63867988	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ABHD16B	chr20	63856498	63867988
ABHD17B_chr9_71860152_71916193	HG01167	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0041	PUR	AMR	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0117	PUR	AMR	ABHD17B	chr9	71860152	71916193
ABHD17C_chr15_80690310_80760621	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0219	PUR	AMR	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0057	PUR	AMR	ABHD17C	chr15	80690310	80760621
ABHD1_chr2_27118815_27135812	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0015	PUR	AMR	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	ABHD1	chr2	27118815	27135812
ABHD2_chr15_89083456_89207355	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0062	PUR	AMR	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0085	PUR	AMR	ABHD2	chr15	89083456	89207355
ABHD3_chr18_21645901_21709774	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0172	PUR	AMR	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	HG01167	hp2	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0173	PUR	AMR	ABHD3	chr18	21645901	21709774
ABHD4_chr14_22593300_22617963	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0004	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0031	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD5_chr3_43685938_43727725	HG01167	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0025	PUR	AMR	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABHD5	chr3	43685938	43727725
ABHD6_chr3_58232792_58299734	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0105	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	HG01167	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0025	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD8_chr19_17287131_17308425	HG01167	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0136	PUR	AMR	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	HG01167	hp2	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0062	PUR	AMR	ABHD8	chr19	17287131	17308425
ABI1_chr10_26741596_26865958	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0179	PUR	AMR	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0033	PUR	AMR	ABI1	chr10	26741596	26865958
ABI2_chr2_203323394_203437169	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0258	PUR	AMR	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	HG01167	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0211	PUR	AMR	ABI2	chr2	203323394	203437169
ABI3BP_chr3_100744156_100998421	HG01167	hp1	a0002	a0002c0019	a0002c0019t0005	a0002c0019t0005g0129	PUR	AMR	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	HG01167	hp2	a0002	a0002c0006	a0002c0006t0001	a0002c0006t0001g0100	PUR	AMR	ABI3BP	chr3	100744156	100998421
ABI3_chr17_49205707_49228225	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0007	PUR	AMR	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0038	PUR	AMR	ABI3	chr17	49205707	49228225
ABITRAM_chr9_108929400_108945954	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0028	PUR	AMR	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0026	PUR	AMR	ABITRAM	chr9	108929400	108945954
ABL1_chr9_130830254_130892675	HG01167	hp1	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0244	PUR	AMR	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0006	PUR	AMR	ABL1	chr9	130830254	130892675
ABL2_chr1_179094330_179234677	HG01167	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0045	PUR	AMR	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	HG01167	hp2	a0001	a0001c0001	a0001c0001t0009	a0001c0001t0009g0314	PUR	AMR	ABL2	chr1	179094330	179234677