JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABLIM2_chr4_7960327_8163813	HG01167	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0031	PUR	AMR	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	HG01167	hp2	a0001	a0001c0001	a0001c0001t0013	a0001c0001t0013g0093	PUR	AMR	ABLIM2	chr4	7960327	8163813
ABLIM3_chr5_149136493_149265542	HG01167	hp1	a0001	a0001c0008	a0001c0008t0001	a0001c0008t0001g0032	PUR	AMR	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0101	PUR	AMR	ABLIM3	chr5	149136493	149265542
ABRACL_chr6_139023745_139048302	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0277	PUR	AMR	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0013	PUR	AMR	ABRACL	chr6	139023745	139048302
ABRAXAS1_chr4_83454517_83490100	HG01167	hp1	a0001	a0001c0001	a0001c0001t0007	a0001c0001t0007g0194	PUR	AMR	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0017	PUR	AMR	ABRAXAS1	chr4	83454517	83490100
ABRA_chr8_106754483_106775244	HG01167	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0004	PUR	AMR	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABRA	chr8	106754483	106775244
ABR_chr17_998519_1184981	HG01167	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0073	PUR	AMR	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	HG01167	hp2	a0001	a0001c0001	a0001c0001t0027	a0001c0001t0027g0039	PUR	AMR	ABR	chr17	998519	1184981
ABT1_chr6_26591953_26605739	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	HG01167	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0002	PUR	AMR	ABT1	chr6	26591953	26605739
ABTB1_chr3_127667952_127685926	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0010	PUR	AMR	ABTB1	chr3	127667952	127685926
ABTB2_chr11_34145987_34363010	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0085	PUR	AMR	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0032	PUR	AMR	ABTB2	chr11	34145987	34363010
ACAA1_chr3_38117715_38142127	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0005	PUR	AMR	ACAA1	chr3	38117715	38142127
ACAA2_chr18_49777164_49818533	HG01167	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0043	PUR	AMR	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	HG01167	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0308	PUR	AMR	ACAA2	chr18	49777164	49818533
ACACA_chr17_37079992_37411836	HG01167	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0109	PUR	AMR	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0233	PUR	AMR	ACACA	chr17	37079992	37411836
ACACB_chr12_109111587_109273226	HG01167	hp1	a0010	a0010c0042	a0010c0042t0003	a0010c0042t0003g0220	PUR	AMR	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	HG01167	hp2	a0001	a0001c0058	a0001c0058t0016	a0001c0058t0016g0187	PUR	AMR	ACACB	chr12	109111587	109273226
ACAD10_chr12_111681053_111762099	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0259	PUR	AMR	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0067	PUR	AMR	ACAD10	chr12	111681053	111762099
ACAD11_chr3_132553141_132664809	HG01167	hp1	a0001	a0001c0008	a0001c0008t0001	a0001c0008t0001g0134	PUR	AMR	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0033	PUR	AMR	ACAD11	chr3	132553141	132664809
ACAD9_chr3_128874620_128918114	HG01167	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0099	PUR	AMR	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0010	PUR	AMR	ACAD9	chr3	128874620	128918114
ACADL_chr2_210182923_210230447	HG01167	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0131	PUR	AMR	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0119	PUR	AMR	ACADL	chr2	210182923	210230447
ACADM_chr1_75719709_75768679	HG01167	hp1	a0002	a0002c0006	a0002c0006t0002	a0002c0006t0002g0155	PUR	AMR	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	HG01167	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0032	PUR	AMR	ACADM	chr1	75719709	75768679
ACADVL_chr17_7214938_7230266	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ACADVL	chr17	7214938	7230266
ACAN_chr15_88798436_88880353	HG01167	hp1	a0001	a0001c0015	a0001c0015t0001	a0001c0015t0001g0363	PUR	AMR	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	HG01167	hp2	a0006	a0006c0008	a0006c0008t0001	a0006c0008t0001g0088	PUR	AMR	ACAN	chr15	88798436	88880353
ACAP1_chr17_7331529_7356477	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0098	PUR	AMR	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0006	PUR	AMR	ACAP1	chr17	7331529	7356477
ACBD3_chr1_226139679_226191741	HG01167	hp1	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0006	PUR	AMR	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0322	PUR	AMR	ACBD3	chr1	226139679	226191741
ACBD4_chr17_45130687_45149176	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0049	PUR	AMR	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0006	PUR	AMR	ACBD4	chr17	45130687	45149176
ACBD6_chr1_180283230_180507577	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0200	PUR	AMR	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0134	PUR	AMR	ACBD6	chr1	180283230	180507577
ACBD7_chr10_15070475_15093776	HG01167	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0063	PUR	AMR	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	HG01167	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0158	PUR	AMR	ACBD7	chr10	15070475	15093776