JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ACP1_chr2_259947_283283	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0050	PUR	AMR	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	ACP1	chr2	259947	283283
ACP2_chr11_47234302_47253814	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	HG01167	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0005	PUR	AMR	ACP2	chr11	47234302	47253814
ACP3_chr3_132312407_132363841	HG01167	hp1	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0002	PUR	AMR	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	HG01167	hp2	a0001	a0001c0003	a0001c0003t0031	a0001c0003t0031g0076	PUR	AMR	ACP3	chr3	132312407	132363841
ACP4_chr19_50785415_50800219	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	HG01167	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0021	PUR	AMR	ACP4	chr19	50785415	50800219
ACP5_chr19_11569660_11582645	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	ACP5	chr19	11569660	11582645
ACP6_chr1_147637230_147675524	HG01167	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0002	PUR	AMR	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACP6	chr1	147637230	147675524
ACP7_chr19_39079368_39116493	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0313	PUR	AMR	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	HG01167	hp2	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0001	PUR	AMR	ACP7	chr19	39079368	39116493
ACRBP_chr12_6633075_6652432	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0062	PUR	AMR	ACRBP	chr12	6633075	6652432
ACR_chr22_50733204_50750339	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0049	PUR	AMR	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACR	chr22	50733204	50750339
ACSBG1_chr15_78162468_78239565	HG01167	hp1	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0341	PUR	AMR	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	HG01167	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0083	PUR	AMR	ACSBG1	chr15	78162468	78239565
ACSBG2_chr19_6130667_6198091	HG01167	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0083	PUR	AMR	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0187	PUR	AMR	ACSBG2	chr19	6130667	6198091
ACSF2_chr17_50421218_50479837	HG01167	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0213	PUR	AMR	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	HG01167	hp2	a0002	a0002c0004	a0002c0004t0002	a0002c0004t0002g0045	PUR	AMR	ACSF2	chr17	50421218	50479837
ACSL1_chr4_184750595_184830968	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0226	PUR	AMR	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	HG01167	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0365	PUR	AMR	ACSL1	chr4	184750595	184830968
ACSL4_chrX_109636335_109738257	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0008	PUR	AMR	ACSL4	chrX	109636335	109738257
ACSL6_chr5_131944973_132016658	HG01167	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0016	PUR	AMR	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	HG01167	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0023	PUR	AMR	ACSL6	chr5	131944973	132016658
ACSM1_chr16_20618235_20702680	HG01167	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0020	PUR	AMR	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	HG01167	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0111	PUR	AMR	ACSM1	chr16	20618235	20702680
ACSM2A_chr16_20446521_20492669	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0110	PUR	AMR	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0116	PUR	AMR	ACSM2A	chr16	20446521	20492669
ACSM2B_chr16_20531226_20581367	HG01167	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0258	PUR	AMR	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	HG01167	hp2	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0266	PUR	AMR	ACSM2B	chr16	20531226	20581367
ACSM3_chr16_20759014_20802581	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0170	PUR	AMR	ACSM3	chr16	20759014	20802581
ACSM4_chr12_7299072_7333719	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0014	PUR	AMR	ACSM4	chr12	7299072	7333719
ACSM5_chr16_20404534_20446336	HG01167	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0147	PUR	AMR	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	HG01167	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0030	PUR	AMR	ACSM5	chr16	20404534	20446336
ACSS2_chr20_34871612_34932959	HG01167	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0143	PUR	AMR	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	HG01167	hp2	a0003	a0003c0005	a0003c0005t0001	a0003c0005t0001g0016	PUR	AMR	ACSS2	chr20	34871612	34932959
ACSS3_chr12_81073079_81266210	HG01167	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0071	PUR	AMR	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	HG01167	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0092	PUR	AMR	ACSS3	chr12	81073079	81266210
ACTA1_chr1_229426245_229439094	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	HG01167	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	ACTA1	chr1	229426245	229439094
ACTBL2_chr5_57475018_57487811	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	HG01167	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ACTBL2	chr5	57475018	57487811
ACTB_chr7_5522148_5535601	HG01167	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACTB	chr7	5522148	5535601