JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ADAMTS2_chr5_179105853_179350461	HG01175	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0092	PUR	AMR	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	HG01175	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0231	PUR	AMR	ADAMTS2	chr5	179105853	179350461
ADAMTS3_chr4_72275969_72574221	HG01175	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0125	PUR	AMR	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	HG01175	hp2	a0001	a0001c0001	a0001c0001t0023	a0001c0001t0023g0064	PUR	AMR	ADAMTS3	chr4	72275969	72574221
ADAMTS4_chr1_161179302_161204054	HG01175	hp1	a0004	a0004c0005	a0004c0005t0037	a0004c0005t0037g0024	PUR	AMR	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	HG01175	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0001	PUR	AMR	ADAMTS4	chr1	161179302	161204054
ADAMTS5_chr21_26912922_26972088	HG01175	hp1	a0006	a0006c0012	a0006c0012t0026	a0006c0012t0026g0299	PUR	AMR	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	HG01175	hp2	a0003	a0003c0003	a0003c0003t0007	a0003c0003t0007g0269	PUR	AMR	ADAMTS5	chr21	26912922	26972088
ADAMTS6_chr5_65143738_65486920	HG01175	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0194	PUR	AMR	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0178	PUR	AMR	ADAMTS6	chr5	65143738	65486920
ADAMTS7_chr15_78754206_78816464	HG01175	hp1	a0047	a0047c0086	a0047c0086t0001	a0047c0086t0001g0031	PUR	AMR	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	HG01175	hp2	a0005	a0005c0005	a0005c0005t0002	a0005c0005t0002g0122	PUR	AMR	ADAMTS7	chr15	78754206	78816464
ADAMTS8_chr11_130399923_130433609	HG01175	hp1	a0010	a0010c0011	a0010c0011t0002	a0010c0011t0002g0294	PUR	AMR	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	HG01175	hp2	a0007	a0007c0008	a0007c0008t0001	a0007c0008t0001g0065	PUR	AMR	ADAMTS8	chr11	130399923	130433609
ADAMTSL1_chr9_18469153_18915950	HG01175	hp1	a0001	a0001c0039	a0001c0039t0001	a0001c0039t0001g0206	PUR	AMR	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	HG01175	hp2	a0001	a0001c0006	a0001c0006t0001	a0001c0006t0001g0065	PUR	AMR	ADAMTSL1	chr9	18469153	18915950
ADAMTSL3_chr15_83649123_84044842	HG01175	hp1	a0005	a0005c0005	a0005c0005t0002	a0005c0005t0002g0034	PUR	AMR	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0093	PUR	AMR	ADAMTSL3	chr15	83649123	84044842
ADAMTSL4_chr1_150544408_150565933	HG01175	hp1	a0001	a0001c0006	a0001c0006t0001	a0001c0006t0001g0010	PUR	AMR	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ADAMTSL4	chr1	150544408	150565933
ADAMTSL5_chr19_1500022_1518019	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0204	PUR	AMR	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0032	PUR	AMR	ADAMTSL5	chr19	1500022	1518019
ADAP2_chr17_30916945_30964322	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0150	PUR	AMR	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0224	PUR	AMR	ADAP2	chr17	30916945	30964322
ADAR_chr1_154577057_154613186	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0092	PUR	AMR	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0156	PUR	AMR	ADAR	chr1	154577057	154613186
ADAT1_chr16_75591868_75628281	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0284	PUR	AMR	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0274	PUR	AMR	ADAT1	chr16	75591868	75628281
ADAT2_chr6_143417832_143455695	HG01175	hp1	a0001	a0001c0001	a0001c0001t0137	a0001c0001t0137g0206	PUR	AMR	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	HG01175	hp2	a0001	a0001c0001	a0001c0001t0130	a0001c0001t0130g0198	PUR	AMR	ADAT2	chr6	143417832	143455695
ADA_chr20_44614522_44656699	HG01175	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0010	PUR	AMR	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0174	PUR	AMR	ADA	chr20	44614522	44656699
ADCK1_chr14_77795109_77940014	HG01175	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0119	PUR	AMR	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	HG01175	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0061	PUR	AMR	ADCK1	chr14	77795109	77940014
ADCK2_chr7_140667945_140700110	HG01175	hp1	a0003	a0003c0003	a0003c0003t0002	a0003c0003t0002g0141	PUR	AMR	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0096	PUR	AMR	ADCK2	chr7	140667945	140700110
ADCK5_chr8_144369047_144398242	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0126	PUR	AMR	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0147	PUR	AMR	ADCK5	chr8	144369047	144398242
ADCY10_chr1_167804386_167919134	HG01175	hp1	a0007	a0007c0055	a0007c0055t0002	a0007c0055t0002g0305	PUR	AMR	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	HG01175	hp2	a0003	a0003c0009	a0003c0009t0003	a0003c0009t0003g0304	PUR	AMR	ADCY10	chr1	167804386	167919134
ADCY1_chr7_45569368_45728116	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0252	PUR	AMR	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	HG01175	hp2	a0002	a0002c0003	a0002c0003t0007	a0002c0003t0007g0161	PUR	AMR	ADCY1	chr7	45569368	45728116
ADCY4_chr14_24313359_24340071	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0103	PUR	AMR	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0112	PUR	AMR	ADCY4	chr14	24313359	24340071
ADCY6_chr12_48761194_48794089	HG01175	hp1	a0001	a0001c0007	a0001c0007t0001	a0001c0007t0001g0180	PUR	AMR	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0174	PUR	AMR	ADCY6	chr12	48761194	48794089
ADCY7_chr16_50261551_50323135	HG01175	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0226	PUR	AMR	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	HG01175	hp2	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0185	PUR	AMR	ADCY7	chr16	50261551	50323135
ADCY8_chr8_130775301_131045909	HG01175	hp1	a0001	a0001c0010	a0001c0010t0002	a0001c0010t0002g0207	PUR	AMR	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0170	PUR	AMR	ADCY8	chr8	130775301	131045909