JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
GJB6_chr13_20216962_20237319	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0013	PUR	AMR	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0008	PUR	AMR	GJB6	chr13	20216962	20237319
GJB7_chr6_87277980_87334278	HG01175	hp1	a0004	a0004c0004	a0004c0004t0001	a0004c0004t0001g0008	PUR	AMR	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	HG01175	hp2	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0187	PUR	AMR	GJB7	chr6	87277980	87334278
GJC1_chr17_44793448_44835287	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0181	PUR	AMR	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	HG01175	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0201	PUR	AMR	GJC1	chr17	44793448	44835287
GJC2_chr1_228144930_228164826	HG01175	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0004	PUR	AMR	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	HG01175	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0012	PUR	AMR	GJC2	chr1	228144930	228164826
GJC3_chr7_99918266_99934620	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0013	PUR	AMR	GJC3	chr7	99918266	99934620
GJD2_chr15_34746032_34759998	HG01175	hp1	a0001	a0001c0005	a0001c0005t0003	a0001c0005t0003g0034	PUR	AMR	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	HG01175	hp2	a0001	a0001c0005	a0001c0005t0005	a0001c0005t0005g0016	PUR	AMR	GJD2	chr15	34746032	34759998
GJD3_chr17_40355652_40369737	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	HG01175	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0000	PUR	AMR	GJD3	chr17	40355652	40369737
GJD4_chr10_35600341_35613935	HG01175	hp1	a0008	a0008c0015	a0008c0015t0001	a0008c0015t0001g0001	PUR	AMR	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJD4	chr10	35600341	35613935
GK2_chr4_79401361_79413228	HG01175	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0000	PUR	AMR	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	GK2	chr4	79401361	79413228
GK3_chr4_165272807_165284704	HG01175	hp1	a0012	a0012c0024	a0012c0024t0001	a0012c0024t0001g0000	PUR	AMR	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	HG01175	hp2	a0004	a0004c0003	a0004c0003t0001	a0004c0003t0001g0000	PUR	AMR	GK3	chr4	165272807	165284704
GK5_chr3_142152527_142230585	HG01175	hp1	a0001	a0001c0001	a0001c0001t0070	a0001c0001t0070g0175	PUR	AMR	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0230	PUR	AMR	GK5	chr3	142152527	142230585
GKN1_chr2_68969636_68985976	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0013	PUR	AMR	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GKN1	chr2	68969636	68985976
GKN2_chr2_68940232_68957893	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0012	PUR	AMR	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0010	PUR	AMR	GKN2	chr2	68940232	68957893
GK_chrX_30648423_30736462	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0084	PUR	AMR	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0155	PUR	AMR	GK	chrX	30648423	30736462
GLA_chrX_101392803_101412925	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0014	PUR	AMR	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	HG01175	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0034	PUR	AMR	GLA	chrX	101392803	101412925
GLB1L3_chr11_134271379_134324564	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0008	PUR	AMR	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	HG01175	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0288	PUR	AMR	GLB1L3	chr11	134271379	134324564
GLB1L_chr2_219231598_219250444	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0020	PUR	AMR	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GLB1L	chr2	219231598	219250444
GLB1_chr3_32991617_33102146	HG01175	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0366	PUR	AMR	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0051	PUR	AMR	GLB1	chr3	32991617	33102146
GLCCI1_chr7_7963796_8094080	HG01175	hp1	a0001	a0001c0001	a0001c0001t0058	a0001c0001t0058g0411	PUR	AMR	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	HG01175	hp2	a0001	a0001c0004	a0001c0004t0010	a0001c0004t0010g0201	PUR	AMR	GLCCI1	chr7	7963796	8094080
GLCE_chr15_69155635_69277207	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0091	PUR	AMR	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	HG01175	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0021	PUR	AMR	GLCE	chr15	69155635	69277207
GLDN_chr15_51336655_51413000	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0173	PUR	AMR	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0323	PUR	AMR	GLDN	chr15	51336655	51413000
GLE1_chr9_128499719_128547288	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0062	PUR	AMR	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0058	PUR	AMR	GLE1	chr9	128499719	128547288
GLI1_chr12_57454785_57477268	HG01175	hp1	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0072	PUR	AMR	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0002	PUR	AMR	GLI1	chr12	57454785	57477268
GLI2_chr2_120730868_120997653	HG01175	hp1	a0002	a0002c0001	a0002c0001t0004	a0002c0001t0004g0045	PUR	AMR	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	HG01175	hp2	a0002	a0002c0004	a0002c0004t0012	a0002c0004t0012g0079	PUR	AMR	GLI2	chr2	120730868	120997653
GLI3_chr7_41955949_42242209	HG01175	hp1	a0004	a0004c0004	a0004c0004t0005	a0004c0004t0005g0055	PUR	AMR	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	HG01175	hp2	a0003	a0003c0003	a0003c0003t0016	a0003c0003t0016g0030	PUR	AMR	GLI3	chr7	41955949	42242209