JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABCA1_chr9_104776006_104933155	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0233	PUR	AMR	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	HG01175	hp2	a0005	a0005c0016	a0005c0016t0001	a0005c0016t0001g0010	PUR	AMR	ABCA1	chr9	104776006	104933155
ABCA2_chr9_137002234_137033237	HG01175	hp1	a0001	a0001c0035	a0001c0035t0001	a0001c0035t0001g0095	PUR	AMR	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	HG01175	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0087	PUR	AMR	ABCA2	chr9	137002234	137033237
ABCA4_chr1_93987834_94126148	HG01175	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0184	PUR	AMR	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	HG01175	hp2	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0175	PUR	AMR	ABCA4	chr1	93987834	94126148
ABCA5_chr17_69239311_69332133	HG01175	hp1	a0003	a0003c0003	a0003c0003t0003	a0003c0003t0003g0039	PUR	AMR	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	HG01175	hp2	a0002	a0002c0001	a0002c0001t0031	a0002c0001t0031g0313	PUR	AMR	ABCA5	chr17	69239311	69332133
ABCA9_chr17_68969488_69065927	HG01175	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0149	PUR	AMR	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0171	PUR	AMR	ABCA9	chr17	68969488	69065927
ABCB11_chr2_168915781_169036324	HG01175	hp1	a0002	a0002c0004	a0002c0004t0003	a0002c0004t0003g0028	PUR	AMR	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	HG01175	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0049	PUR	AMR	ABCB11	chr2	168915781	169036324
ABCB1_chr7_87498017_87605884	HG01175	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0006	PUR	AMR	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0172	PUR	AMR	ABCB1	chr7	87498017	87605884
ABCB4_chr7_87396696_87480680	HG01175	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0109	PUR	AMR	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	HG01175	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0126	PUR	AMR	ABCB4	chr7	87396696	87480680
ABCB5_chr7_20610667_20762008	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0087	PUR	AMR	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	HG01175	hp2	a0011	a0011c0017	a0011c0017t0007	a0011c0017t0007g0042	PUR	AMR	ABCB5	chr7	20610667	20762008
ABCB6_chr2_219204772_219223958	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0006	PUR	AMR	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	HG01175	hp2	a0002	a0002c0003	a0002c0003t0002	a0002c0003t0002g0007	PUR	AMR	ABCB6	chr2	219204772	219223958
ABCB8_chr7_151023450_151052782	HG01175	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0129	PUR	AMR	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	ABCB8	chr7	151023450	151052782
ABCB9_chr12_122923992_122971463	HG01175	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0227	PUR	AMR	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0176	PUR	AMR	ABCB9	chr12	122923992	122971463
ABCC10_chr6_43422541_43455427	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0075	PUR	AMR	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	HG01175	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0093	PUR	AMR	ABCC10	chr6	43422541	43455427
ABCC11_chr16_48160773_48252539	HG01175	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0087	PUR	AMR	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	HG01175	hp2	a0003	a0003c0006	a0003c0006t0004	a0003c0006t0004g0028	PUR	AMR	ABCC11	chr16	48160773	48252539
ABCC1_chr16_15944616_16148053	HG01175	hp1	a0001	a0001c0003	a0001c0003t0008	a0001c0003t0008g0056	PUR	AMR	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	HG01175	hp2	a0001	a0001c0004	a0001c0004t0013	a0001c0004t0013g0048	PUR	AMR	ABCC1	chr16	15944616	16148053
ABCC2_chr10_99777640_99857594	HG01175	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0003	PUR	AMR	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	HG01175	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0124	PUR	AMR	ABCC2	chr10	99777640	99857594
ABCC3_chr17_50629881_50697253	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0107	PUR	AMR	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	HG01175	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0296	PUR	AMR	ABCC3	chr17	50629881	50697253
ABCC5_chr3_183914934_184022884	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0188	PUR	AMR	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	HG01175	hp2	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0051	PUR	AMR	ABCC5	chr3	183914934	184022884
ABCC6_chr16_16144565_16228494	HG01175	hp1	a0010	a0010c0029	a0010c0029t0001	a0010c0029t0001g0230	PUR	AMR	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	HG01175	hp2	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0263	PUR	AMR	ABCC6	chr16	16144565	16228494
ABCC8_chr11_17387885_17481845	HG01175	hp1	a0001	a0001c0006	a0001c0006t0001	a0001c0006t0001g0097	PUR	AMR	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	HG01175	hp2	a0002	a0002c0054	a0002c0054t0001	a0002c0054t0001g0132	PUR	AMR	ABCC8	chr11	17387885	17481845
ABCC9_chr12_21792389_21946426	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0115	PUR	AMR	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0159	PUR	AMR	ABCC9	chr12	21792389	21946426
ABCD1_chrX_153719856_153749755	HG01175	hp1	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0076	PUR	AMR	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABCD1	chrX	153719856	153749755
ABCD2_chr12_39545033_39624803	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0157	PUR	AMR	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	HG01175	hp2	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0052	PUR	AMR	ABCD2	chr12	39545033	39624803
ABCD3_chr1_94413389_94523663	HG01175	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0215	PUR	AMR	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	HG01175	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0120	PUR	AMR	ABCD3	chr1	94413389	94523663
ABCD4_chr14_74280269_74307934	HG01175	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0082	PUR	AMR	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0003	PUR	AMR	ABCD4	chr14	74280269	74307934