JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABCE1_chr4_145093311_145134524	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABCE1	chr4	145093311	145134524
ABCF1_chr6_30566442_30596522	HG01175	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0081	PUR	AMR	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	HG01175	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0240	PUR	AMR	ABCF1	chr6	30566442	30596522
ABCF2_chr7_151206484_151232205	HG01175	hp1	a0001	a0001c0005	a0001c0005t0005	a0001c0005t0005g0008	PUR	AMR	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	HG01175	hp2	a0001	a0001c0001	a0001c0001t0021	a0001c0001t0021g0096	PUR	AMR	ABCF2	chr7	151206484	151232205
ABCF3_chr3_184181199_184199005	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0012	PUR	AMR	ABCF3	chr3	184181199	184199005
ABCG1_chr21_42214140_42302244	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0252	PUR	AMR	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0181	PUR	AMR	ABCG1	chr21	42214140	42302244
ABCG2_chr4_88085269_88163639	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0143	PUR	AMR	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0045	PUR	AMR	ABCG2	chr4	88085269	88163639
ABCG4_chr11_119144052_119167653	HG01175	hp1	a0001	a0001c0001	a0001c0001t0019	a0001c0001t0019g0005	PUR	AMR	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0041	PUR	AMR	ABCG4	chr11	119144052	119167653
ABCG5_chr2_43807472_43843839	HG01175	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0087	PUR	AMR	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0047	PUR	AMR	ABCG5	chr2	43807472	43843839
ABCG8_chr2_43833971_43887988	HG01175	hp1	a0003	a0003c0002	a0003c0002t0003	a0003c0002t0003g0268	PUR	AMR	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	HG01175	hp2	a0003	a0003c0002	a0003c0002t0028	a0003c0002t0028g0270	PUR	AMR	ABCG8	chr2	43833971	43887988
ABHD10_chr3_111974026_111998368	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	HG01175	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0009	PUR	AMR	ABHD10	chr3	111974026	111998368
ABHD11_chr7_73731094_73743802	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	HG01175	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0002	PUR	AMR	ABHD11	chr7	73731094	73743802
ABHD12B_chr14_50867053_50909970	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0086	PUR	AMR	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0220	PUR	AMR	ABHD12B	chr14	50867053	50909970
ABHD12_chr20_25295214_25395835	HG01175	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0145	PUR	AMR	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	HG01175	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0208	PUR	AMR	ABHD12	chr20	25295214	25395835
ABHD13_chr13_108213392_108239243	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	HG01175	hp2	a0001	a0001c0001	a0001c0001t0010	a0001c0001t0010g0006	PUR	AMR	ABHD13	chr13	108213392	108239243
ABHD14A_chr3_51970064_51986196	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0008	PUR	AMR	ABHD14A	chr3	51970064	51986196
ABHD14B_chr3_51963515_51979049	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0012	PUR	AMR	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0017	PUR	AMR	ABHD14B	chr3	51963515	51979049
ABHD15_chr17_29555547_29572037	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0010	PUR	AMR	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	HG01175	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0007	PUR	AMR	ABHD15	chr17	29555547	29572037
ABHD16A_chr6_31681955_31708324	HG01175	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0008	PUR	AMR	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0016	PUR	AMR	ABHD16A	chr6	31681955	31708324
ABHD16B_chr20_63856498_63867988	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	HG01175	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0000	PUR	AMR	ABHD16B	chr20	63856498	63867988
ABHD17A_chr19_1871810_1890496	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0049	PUR	AMR	ABHD17A	chr19	1871810	1890496
ABHD17C_chr15_80690310_80760621	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0122	PUR	AMR	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0195	PUR	AMR	ABHD17C	chr15	80690310	80760621
ABHD1_chr2_27118815_27135812	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	HG01175	hp2	a0006	a0006c0008	a0006c0008t0001	a0006c0008t0001g0008	PUR	AMR	ABHD1	chr2	27118815	27135812
ABHD4_chr14_22593300_22617963	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0016	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD6_chr3_58232792_58299734	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0070	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	HG01175	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0041	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD8_chr19_17287131_17308425	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0093	PUR	AMR	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0215	PUR	AMR	ABHD8	chr19	17287131	17308425