JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ACP7_chr19_39079368_39116493	HG01175	hp1	a0001	a0001c0004	a0001c0004t0004	a0001c0004t0004g0078	PUR	AMR	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	HG01175	hp2	a0001	a0001c0002	a0001c0002t0005	a0001c0002t0005g0246	PUR	AMR	ACP7	chr19	39079368	39116493
ACRBP_chr12_6633075_6652432	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0036	PUR	AMR	ACRBP	chr12	6633075	6652432
ACRV1_chr11_125666522_125685847	HG01175	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0102	PUR	AMR	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACRV1	chr11	125666522	125685847
ACSBG1_chr15_78162468_78239565	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0075	PUR	AMR	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0047	PUR	AMR	ACSBG1	chr15	78162468	78239565
ACSBG2_chr19_6130667_6198091	HG01175	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0068	PUR	AMR	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	HG01175	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0095	PUR	AMR	ACSBG2	chr19	6130667	6198091
ACSF2_chr17_50421218_50479837	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	PUR	AMR	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	HG01175	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0181	PUR	AMR	ACSF2	chr17	50421218	50479837
ACSF3_chr16_89088852_89161233	HG01175	hp1	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0039	PUR	AMR	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	HG01175	hp2	a0002	a0002c0003	a0002c0003t0005	a0002c0003t0005g0082	PUR	AMR	ACSF3	chr16	89088852	89161233
ACSL5_chr10_112369116_112433376	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0359	PUR	AMR	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0192	PUR	AMR	ACSL5	chr10	112369116	112433376
ACSL6_chr5_131944973_132016658	HG01175	hp1	a0001	a0001c0001	a0001c0001t0014	a0001c0001t0014g0259	PUR	AMR	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0249	PUR	AMR	ACSL6	chr5	131944973	132016658
ACSM2A_chr16_20446521_20492669	HG01175	hp1	a0005	a0005c0005	a0005c0005t0001	a0005c0005t0001g0139	PUR	AMR	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	HG01175	hp2	a0005	a0005c0005	a0005c0005t0001	a0005c0005t0001g0022	PUR	AMR	ACSM2A	chr16	20446521	20492669
ACSM2B_chr16_20531226_20581367	HG01175	hp1	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0285	PUR	AMR	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	HG01175	hp2	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0278	PUR	AMR	ACSM2B	chr16	20531226	20581367
ACSM3_chr16_20759014_20802581	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0070	PUR	AMR	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0193	PUR	AMR	ACSM3	chr16	20759014	20802581
ACSM4_chr12_7299072_7333719	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	HG01175	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0036	PUR	AMR	ACSM4	chr12	7299072	7333719
ACSM5_chr16_20404534_20446336	HG01175	hp1	a0001	a0001c0036	a0001c0036t0002	a0001c0036t0002g0256	PUR	AMR	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	HG01175	hp2	a0002	a0002c0016	a0002c0016t0002	a0002c0016t0002g0188	PUR	AMR	ACSM5	chr16	20404534	20446336
ACSM6_chr10_95189238_95233929	HG01175	hp1	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0170	PUR	AMR	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0133	PUR	AMR	ACSM6	chr10	95189238	95233929
ACSS1_chr20_25001237_25063139	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0184	PUR	AMR	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	HG01175	hp2	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0002	PUR	AMR	ACSS1	chr20	25001237	25063139
ACSS2_chr20_34871612_34932959	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0301	PUR	AMR	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	HG01175	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0035	PUR	AMR	ACSS2	chr20	34871612	34932959
ACTA1_chr1_229426245_229439094	HG01175	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	ACTA1	chr1	229426245	229439094
ACTA2_chr10_88930074_88957773	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0010	PUR	AMR	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ACTA2	chr10	88930074	88957773
ACTBL2_chr5_57475018_57487811	HG01175	hp1	a0001	a0001c0001	a0001c0001t0010	a0001c0001t0010g0000	PUR	AMR	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ACTBL2	chr5	57475018	57487811
ACTB_chr7_5522148_5535601	HG01175	hp1	a0001	a0001c0002	a0001c0002t0009	a0001c0002t0009g0011	PUR	AMR	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	ACTB	chr7	5522148	5535601
ACTC1_chr15_34785230_34800549	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0044	PUR	AMR	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0076	PUR	AMR	ACTC1	chr15	34785230	34800549
ACTG2_chr2_73888008_73924865	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0367	PUR	AMR	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	HG01175	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0140	PUR	AMR	ACTG2	chr2	73888008	73924865
ACTL10_chr20_33661943_33673525	HG01175	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0000	PUR	AMR	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	HG01175	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	PUR	AMR	ACTL10	chr20	33661943	33673525
ACTL6A_chr3_179557926_179593407	HG01175	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0187	PUR	AMR	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	HG01175	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0100	PUR	AMR	ACTL6A	chr3	179557926	179593407