JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ADAM17_chr2_9483486_9560830	HG01884	hp1	a0001	a0001c0001	a0001c0001t0019	a0001c0001t0019g0096	ACB	AFR	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	HG01884	hp2	a0001	a0001c0001	a0001c0001t0020	a0001c0001t0020g0046	ACB	AFR	ADAM17	chr2	9483486	9560830
ADAM18_chr8_39579568_39735065	HG01884	hp1	a0010	a0010c0013	a0010c0013t0001	a0010c0013t0001g0161	ACB	AFR	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	HG01884	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0257	ACB	AFR	ADAM18	chr8	39579568	39735065
ADAM19_chr5_157472304_157580775	HG01884	hp1	a0005	a0005c0005	a0005c0005t0008	a0005c0005t0008g0274	ACB	AFR	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	HG01884	hp2	a0001	a0001c0001	a0001c0001t0027	a0001c0001t0027g0102	ACB	AFR	ADAM19	chr5	157472304	157580775
ADAM20_chr14_70517358_70540004	HG01884	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0037	ACB	AFR	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	HG01884	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0006	ACB	AFR	ADAM20	chr14	70517358	70540004
ADAM21_chr14_70447174_70464905	HG01884	hp1	a0005	a0005c0010	a0005c0010t0003	a0005c0010t0003g0025	ACB	AFR	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	HG01884	hp2	a0003	a0003c0004	a0003c0004t0001	a0003c0004t0001g0004	ACB	AFR	ADAM21	chr14	70447174	70464905
ADAM22_chr7_87929251_88207889	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0166	ACB	AFR	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	HG01884	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0032	ACB	AFR	ADAM22	chr7	87929251	88207889
ADAM23_chr2_206438532_206626127	HG01884	hp1	a0001	a0001c0005	a0001c0005t0027	a0001c0005t0027g0188	ACB	AFR	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0173	ACB	AFR	ADAM23	chr2	206438532	206626127
ADAM28_chr8_24289069_24364014	HG01884	hp1	a0004	a0004c0004	a0004c0004t0007	a0004c0004t0007g0109	ACB	AFR	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0194	ACB	AFR	ADAM28	chr8	24289069	24364014
ADAM29_chr4_174913358_174983180	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0068	ACB	AFR	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	HG01884	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0030	ACB	AFR	ADAM29	chr4	174913358	174983180
ADAM2_chr8_39738735_39843227	HG01884	hp1	a0010	a0010c0016	a0010c0016t0001	a0010c0016t0001g0294	ACB	AFR	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0028	ACB	AFR	ADAM2	chr8	39738735	39843227
ADAM30_chr1_119888533_119901515	HG01884	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0000	ACB	AFR	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	ACB	AFR	ADAM30	chr1	119888533	119901515
ADAM33_chr20_3662975_3687010	HG01884	hp1	a0013	a0013c0040	a0013c0040t0006	a0013c0040t0006g0120	ACB	AFR	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	HG01884	hp2	a0001	a0001c0006	a0001c0006t0006	a0001c0006t0006g0247	ACB	AFR	ADAM33	chr20	3662975	3687010
ADAM7_chr8_24436026_24514565	HG01884	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0211	ACB	AFR	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	HG01884	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0256	ACB	AFR	ADAM7	chr8	24436026	24514565
ADAM8_chr10_133257423_133281868	HG01884	hp1	a0003	a0003c0004	a0003c0004t0003	a0003c0004t0003g0145	ACB	AFR	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	HG01884	hp2	a0003	a0003c0004	a0003c0004t0003	a0003c0004t0003g0146	ACB	AFR	ADAM8	chr10	133257423	133281868
ADAM9_chr8_38991973_39110261	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0184	ACB	AFR	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0121	ACB	AFR	ADAM9	chr8	38991973	39110261
ADAMDEC1_chr8_24379285_24411013	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0017	ACB	AFR	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	HG01884	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0019	ACB	AFR	ADAMDEC1	chr8	24379285	24411013
ADAMTS10_chr19_8575240_8615715	HG01884	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0132	ACB	AFR	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	HG01884	hp2	a0002	a0002c0005	a0002c0005t0001	a0002c0005t0001g0267	ACB	AFR	ADAMTS10	chr19	8575240	8615715
ADAMTS12_chr5_33518535_33896990	HG01884	hp1	a0004	a0004c0017	a0004c0017t0013	a0004c0017t0013g0209	ACB	AFR	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	HG01884	hp2	a0008	a0008c0055	a0008c0055t0001	a0008c0055t0001g0176	ACB	AFR	ADAMTS12	chr5	33518535	33896990
ADAMTS13_chr9_133417367_133464386	HG01884	hp1	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0266	ACB	AFR	ADAMTS13	chr9	133417367	133464386
ADAMTS13_chr9_133417367_133464386	HG01884	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0272	ACB	AFR	ADAMTS13	chr9	133417367	133464386
ADAMTS14_chr10_70667506_70767441	HG01884	hp1	a0001	a0001c0017	a0001c0017t0004	a0001c0017t0004g0268	ACB	AFR	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	HG01884	hp2	a0001	a0001c0069	a0001c0069t0013	a0001c0069t0013g0345	ACB	AFR	ADAMTS14	chr10	70667506	70767441
ADAMTS15_chr11_130443645_130481645	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0023	ACB	AFR	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	HG01884	hp2	a0017	a0017c0025	a0017c0025t0003	a0017c0025t0003g0100	ACB	AFR	ADAMTS15	chr11	130443645	130481645
ADAMTS16_chr5_5135330_5325304	HG01884	hp1	a0001	a0001c0036	a0001c0036t0006	a0001c0036t0006g0230	ACB	AFR	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	HG01884	hp2	a0009	a0009c0039	a0009c0039t0015	a0009c0039t0015g0099	ACB	AFR	ADAMTS16	chr5	5135330	5325304
ADAMTS18_chr16_77277128_77440034	HG01884	hp1	a0002	a0002c0007	a0002c0007t0036	a0002c0007t0036g0094	ACB	AFR	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	HG01884	hp2	a0001	a0001c0024	a0001c0024t0021	a0001c0024t0021g0304	ACB	AFR	ADAMTS18	chr16	77277128	77440034
ADAMTS19_chr5_129455298_129743683	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0189	ACB	AFR	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0025	ACB	AFR	ADAMTS19	chr5	129455298	129743683
ADAMTS1_chr21_26830755_26850409	HG01884	hp1	a0002	a0002c0002	a0002c0002t0035	a0002c0002t0035g0057	ACB	AFR	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	HG01884	hp2	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0035	ACB	AFR	ADAMTS1	chr21	26830755	26850409