JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
FICD_chr12_108510277_108526210	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	HG01884	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0001	ACB	AFR	FICD	chr12	108510277	108526210
FIGLA_chr2_70772310_70795643	HG01884	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0049	ACB	AFR	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	ACB	AFR	FIGLA	chr2	70772310	70795643
FIGNL1_chr7_50439133_50455350	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	HG01884	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0008	ACB	AFR	FIGNL1	chr7	50439133	50455350
FIGNL2_chr12_51812899_51853718	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0182	ACB	AFR	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	HG01884	hp2	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0187	ACB	AFR	FIGNL2	chr12	51812899	51853718
FIGN_chr2_163597611_163741008	HG01884	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0039	ACB	AFR	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	HG01884	hp2	a0001	a0001c0001	a0001c0001t0081	a0001c0001t0081g0261	ACB	AFR	FIGN	chr2	163597611	163741008
FILIP1_chr6_75303090_75498800	HG01884	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0054	ACB	AFR	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0195	ACB	AFR	FILIP1	chr6	75303090	75498800
FIP1L1_chr4_53372641_53465862	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0286	ACB	AFR	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	HG01884	hp2	a0001	a0001c0001	a0001c0001t0016	a0001c0001t0016g0031	ACB	AFR	FIP1L1	chr4	53372641	53465862
FIRRM_chr1_169790040_169859080	HG01884	hp1	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0020	ACB	AFR	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0106	ACB	AFR	FIRRM	chr1	169790040	169859080
FIS1_chr7_101234472_101250081	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0006	ACB	AFR	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	ACB	AFR	FIS1	chr7	101234472	101250081
FITM1_chr14_24125659_24137847	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	ACB	AFR	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	HG01884	hp2	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0001	ACB	AFR	FITM1	chr14	24125659	24137847
FITM2_chr20_44297840_44316202	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	HG01884	hp2	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0007	ACB	AFR	FITM2	chr20	44297840	44316202
FIZ1_chr19_55586376_55604517	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0098	ACB	AFR	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0015	ACB	AFR	FIZ1	chr19	55586376	55604517
FJX1_chr11_35613460_35625865	HG01884	hp1	a0002	a0002c0004	a0002c0004t0004	a0002c0004t0004g0000	ACB	AFR	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	HG01884	hp2	a0002	a0002c0004	a0002c0004t0005	a0002c0004t0005g0000	ACB	AFR	FJX1	chr11	35613460	35625865
FKBP10_chr17_41808004_41828213	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0074	ACB	AFR	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	HG01884	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0076	ACB	AFR	FKBP10	chr17	41808004	41828213
FKBP11_chr12_48916963_48930492	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	ACB	AFR	FKBP11	chr12	48916963	48930492
FKBP11_chr12_48916963_48930492	HG01884	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	ACB	AFR	FKBP11	chr12	48916963	48930492
FKBP14_chr7_30005587_30031702	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0011	ACB	AFR	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	FKBP14	chr7	30005587	30031702
FKBP15_chr9_113156006_113226277	HG01884	hp1	a0001	a0001c0001	a0001c0001t0009	a0001c0001t0009g0359	ACB	AFR	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	HG01884	hp2	a0001	a0001c0002	a0001c0002t0006	a0001c0002t0006g0090	ACB	AFR	FKBP15	chr9	113156006	113226277
FKBP1A_chr20_1363978_1398054	HG01884	hp1	a0001	a0001c0001	a0001c0001t0015	a0001c0001t0015g0014	ACB	AFR	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	HG01884	hp2	a0001	a0001c0001	a0001c0001t0038	a0001c0001t0038g0129	ACB	AFR	FKBP1A	chr20	1363978	1398054
FKBP2_chr11_64236095_64249132	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	HG01884	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0001	ACB	AFR	FKBP2	chr11	64236095	64249132
FKBP3_chr14_45110599_45139481	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0148	ACB	AFR	FKBP3	chr14	45110599	45139481
FKBP3_chr14_45110599_45139481	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0036	ACB	AFR	FKBP3	chr14	45110599	45139481
FKBP4_chr12_2789970_2810423	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0011	ACB	AFR	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	ACB	AFR	FKBP4	chr12	2789970	2810423
FKBP6_chr7_73323161_73363625	HG01884	hp1	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0205	ACB	AFR	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0034	ACB	AFR	FKBP6	chr7	73323161	73363625
FKBP7_chr2_178458664_178483600	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0020	ACB	AFR	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	FKBP7	chr2	178458664	178483600
FKBP8_chr19_18526763_18548573	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0049	ACB	AFR	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0020	ACB	AFR	FKBP8	chr19	18526763	18548573
FKBP9_chr7_32952440_33011928	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0153	ACB	AFR	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	HG01884	hp2	a0001	a0001c0001	a0001c0001t0015	a0001c0001t0015g0160	ACB	AFR	FKBP9	chr7	32952440	33011928