JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABCC3_chr17_50629881_50697253	HG01884	hp1	a0001	a0001c0009	a0001c0009t0003	a0001c0009t0003g0006	ACB	AFR	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	HG01884	hp2	a0001	a0001c0004	a0001c0004t0003	a0001c0004t0003g0267	ACB	AFR	ABCC3	chr17	50629881	50697253
ABCC4_chr13_95014835_95306451	HG01884	hp1	a0001	a0001c0021	a0001c0021t0013	a0001c0021t0013g0015	ACB	AFR	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	HG01884	hp2	a0001	a0001c0013	a0001c0013t0004	a0001c0013t0004g0042	ACB	AFR	ABCC4	chr13	95014835	95306451
ABCC5_chr3_183914934_184022884	HG01884	hp1	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0356	ACB	AFR	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	HG01884	hp2	a0001	a0001c0007	a0001c0007t0008	a0001c0007t0008g0254	ACB	AFR	ABCC5	chr3	183914934	184022884
ABCC6_chr16_16144565_16228494	HG01884	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0174	ACB	AFR	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	HG01884	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0186	ACB	AFR	ABCC6	chr16	16144565	16228494
ABCC8_chr11_17387885_17481845	HG01884	hp1	a0003	a0003c0029	a0003c0029t0002	a0003c0029t0002g0011	ACB	AFR	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	HG01884	hp2	a0001	a0001c0015	a0001c0015t0001	a0001c0015t0001g0155	ACB	AFR	ABCC8	chr11	17387885	17481845
ABCC9_chr12_21792389_21946426	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0079	ACB	AFR	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0036	ACB	AFR	ABCC9	chr12	21792389	21946426
ABCD1_chrX_153719856_153749755	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0095	ACB	AFR	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	HG01884	hp2	a0001	a0001c0001	a0001c0001t0007	a0001c0001t0007g0010	ACB	AFR	ABCD1	chrX	153719856	153749755
ABCD2_chr12_39545033_39624803	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0007	ACB	AFR	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	HG01884	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0001	ACB	AFR	ABCD2	chr12	39545033	39624803
ABCD3_chr1_94413389_94523663	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0014	ACB	AFR	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0263	ACB	AFR	ABCD3	chr1	94413389	94523663
ABCD4_chr14_74280269_74307934	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	ACB	AFR	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	HG01884	hp2	a0003	a0003c0003	a0003c0003t0016	a0003c0003t0016g0100	ACB	AFR	ABCD4	chr14	74280269	74307934
ABCE1_chr4_145093311_145134524	HG01884	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0135	ACB	AFR	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	ACB	AFR	ABCE1	chr4	145093311	145134524
ABCF2_chr7_151206484_151232205	HG01884	hp1	a0001	a0001c0006	a0001c0006t0013	a0001c0006t0013g0031	ACB	AFR	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	HG01884	hp2	a0001	a0001c0002	a0001c0002t0009	a0001c0002t0009g0025	ACB	AFR	ABCF2	chr7	151206484	151232205
ABCF3_chr3_184181199_184199005	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0018	ACB	AFR	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0051	ACB	AFR	ABCF3	chr3	184181199	184199005
ABCG1_chr21_42214140_42302244	HG01884	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0063	ACB	AFR	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	HG01884	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0272	ACB	AFR	ABCG1	chr21	42214140	42302244
ABCG2_chr4_88085269_88163639	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0139	ACB	AFR	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0189	ACB	AFR	ABCG2	chr4	88085269	88163639
ABCG4_chr11_119144052_119167653	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0017	ACB	AFR	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	ABCG4	chr11	119144052	119167653
ABCG5_chr2_43807472_43843839	HG01884	hp1	a0005	a0005c0005	a0005c0005t0008	a0005c0005t0008g0045	ACB	AFR	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	HG01884	hp2	a0005	a0005c0005	a0005c0005t0002	a0005c0005t0002g0036	ACB	AFR	ABCG5	chr2	43807472	43843839
ABCG8_chr2_43833971_43887988	HG01884	hp1	a0002	a0002c0003	a0002c0003t0111	a0002c0003t0111g0178	ACB	AFR	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	HG01884	hp2	a0003	a0003c0002	a0003c0002t0102	a0003c0002t0102g0161	ACB	AFR	ABCG8	chr2	43833971	43887988
ABHD10_chr3_111974026_111998368	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0025	ACB	AFR	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	ACB	AFR	ABHD10	chr3	111974026	111998368
ABHD11_chr7_73731094_73743802	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	ABHD11	chr7	73731094	73743802
ABHD12B_chr14_50867053_50909970	HG01884	hp1	a0002	a0002c0002	a0002c0002t0005	a0002c0002t0005g0170	ACB	AFR	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	HG01884	hp2	a0001	a0001c0005	a0001c0005t0004	a0001c0005t0004g0126	ACB	AFR	ABHD12B	chr14	50867053	50909970
ABHD12_chr20_25295214_25395835	HG01884	hp1	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0171	ACB	AFR	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	HG01884	hp2	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0265	ACB	AFR	ABHD12	chr20	25295214	25395835
ABHD13_chr13_108213392_108239243	HG01884	hp1	a0001	a0001c0001	a0001c0001t0007	a0001c0001t0007g0012	ACB	AFR	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	ACB	AFR	ABHD13	chr13	108213392	108239243
ABHD14A_chr3_51970064_51986196	HG01884	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0001	ACB	AFR	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	HG01884	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0014	ACB	AFR	ABHD14A	chr3	51970064	51986196
ABHD14B_chr3_51963515_51979049	HG01884	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0026	ACB	AFR	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	ABHD14B	chr3	51963515	51979049