JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABRA_chr8_106754483_106775244	HG01884	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0012	ACB	AFR	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	HG01884	hp2	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0008	ACB	AFR	ABRA	chr8	106754483	106775244
ABR_chr17_998519_1184981	HG01884	hp1	a0001	a0001c0001	a0001c0001t0045	a0001c0001t0045g0247	ACB	AFR	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	HG01884	hp2	a0001	a0001c0003	a0001c0003t0017	a0001c0003t0017g0120	ACB	AFR	ABR	chr17	998519	1184981
ABT1_chr6_26591953_26605739	HG01884	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0003	ACB	AFR	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	HG01884	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	ACB	AFR	ABT1	chr6	26591953	26605739
ABTB1_chr3_127667952_127685926	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0007	ACB	AFR	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	HG01884	hp2	a0001	a0001c0014	a0001c0014t0001	a0001c0014t0001g0001	ACB	AFR	ABTB1	chr3	127667952	127685926
ABTB2_chr11_34145987_34363010	HG01884	hp1	a0001	a0001c0005	a0001c0005t0004	a0001c0005t0004g0142	ACB	AFR	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0138	ACB	AFR	ABTB2	chr11	34145987	34363010
ABTB3_chr12_107313434_107664642	HG01884	hp1	a0001	a0001c0011	a0001c0011t0006	a0001c0011t0006g0101	ACB	AFR	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	HG01884	hp2	a0015	a0015c0022	a0015c0022t0003	a0015c0022t0003g0048	ACB	AFR	ABTB3	chr12	107313434	107664642
ACAA1_chr3_38117715_38142127	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	ACB	AFR	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0012	ACB	AFR	ACAA1	chr3	38117715	38142127
ACAA2_chr18_49777164_49818533	HG01884	hp1	a0001	a0001c0001	a0001c0001t0018	a0001c0001t0018g0145	ACB	AFR	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	HG01884	hp2	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0224	ACB	AFR	ACAA2	chr18	49777164	49818533
ACACA_chr17_37079992_37411836	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0180	ACB	AFR	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	HG01884	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0133	ACB	AFR	ACACA	chr17	37079992	37411836
ACACB_chr12_109111587_109273226	HG01884	hp1	a0017	a0017c0123	a0017c0123t0015	a0017c0123t0015g0058	ACB	AFR	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	HG01884	hp2	a0002	a0002c0007	a0002c0007t0003	a0002c0007t0003g0055	ACB	AFR	ACACB	chr12	109111587	109273226
ACAD10_chr12_111681053_111762099	HG01884	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0030	ACB	AFR	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0205	ACB	AFR	ACAD10	chr12	111681053	111762099
ACAD8_chr11_134248568_134270855	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0033	ACB	AFR	ACAD8	chr11	134248568	134270855
ACAD9_chr3_128874620_128918114	HG01884	hp1	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0007	ACB	AFR	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	HG01884	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0005	ACB	AFR	ACAD9	chr3	128874620	128918114
ACADL_chr2_210182923_210230447	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0032	ACB	AFR	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0041	ACB	AFR	ACADL	chr2	210182923	210230447
ACADM_chr1_75719709_75768679	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0269	ACB	AFR	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	HG01884	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0117	ACB	AFR	ACADM	chr1	75719709	75768679
ACADSB_chr10_123004006_123063290	HG01884	hp1	a0001	a0001c0001	a0001c0001t0053	a0001c0001t0053g0295	ACB	AFR	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0057	ACB	AFR	ACADSB	chr10	123004006	123063290
ACADS_chr12_120720826_120745008	HG01884	hp1	a0001	a0001c0012	a0001c0012t0001	a0001c0012t0001g0040	ACB	AFR	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	HG01884	hp2	a0001	a0001c0006	a0001c0006t0011	a0001c0006t0011g0232	ACB	AFR	ACADS	chr12	120720826	120745008
ACADVL_chr17_7214938_7230266	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	ACB	AFR	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	HG01884	hp2	a0004	a0004c0005	a0004c0005t0001	a0004c0005t0001g0007	ACB	AFR	ACADVL	chr17	7214938	7230266
ACAN_chr15_88798436_88880353	HG01884	hp1	a0068	a0068c0134	a0068c0134t0013	a0068c0134t0013g0280	ACB	AFR	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	HG01884	hp2	a0023	a0023c0124	a0023c0124t0001	a0023c0124t0001g0257	ACB	AFR	ACAN	chr15	88798436	88880353
ACAP1_chr17_7331529_7356477	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0074	ACB	AFR	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0079	ACB	AFR	ACAP1	chr17	7331529	7356477
ACAP2_chr3_195269745_195448020	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0006	ACB	AFR	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0279	ACB	AFR	ACAP2	chr3	195269745	195448020
ACAT2_chr6_159757045_159784112	HG01884	hp1	a0002	a0002c0004	a0002c0004t0001	a0002c0004t0001g0143	ACB	AFR	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0094	ACB	AFR	ACAT2	chr6	159757045	159784112
ACBD4_chr17_45130687_45149176	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0044	ACB	AFR	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0125	ACB	AFR	ACBD4	chr17	45130687	45149176
ACBD5_chr10_27190214_27245797	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0146	ACB	AFR	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	HG01884	hp2	a0001	a0001c0001	a0001c0001t0020	a0001c0001t0020g0212	ACB	AFR	ACBD5	chr10	27190214	27245797
ACBD6_chr1_180283230_180507577	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0166	ACB	AFR	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0163	ACB	AFR	ACBD6	chr1	180283230	180507577