JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ACSM4_chr12_7299072_7333719	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0027	ACB	AFR	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0028	ACB	AFR	ACSM4	chr12	7299072	7333719
ACSM5_chr16_20404534_20446336	HG01884	hp1	a0007	a0007c0009	a0007c0009t0006	a0007c0009t0006g0041	ACB	AFR	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	HG01884	hp2	a0005	a0005c0005	a0005c0005t0012	a0005c0005t0012g0334	ACB	AFR	ACSM5	chr16	20404534	20446336
ACSM6_chr10_95189238_95233929	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0070	ACB	AFR	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	HG01884	hp2	a0004	a0004c0004	a0004c0004t0001	a0004c0004t0001g0035	ACB	AFR	ACSM6	chr10	95189238	95233929
ACSS1_chr20_25001237_25063139	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0097	ACB	AFR	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	HG01884	hp2	a0002	a0002c0012	a0002c0012t0002	a0002c0012t0002g0167	ACB	AFR	ACSS1	chr20	25001237	25063139
ACSS2_chr20_34871612_34932959	HG01884	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0128	ACB	AFR	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	HG01884	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0125	ACB	AFR	ACSS2	chr20	34871612	34932959
ACSS3_chr12_81073079_81266210	HG01884	hp1	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0075	ACB	AFR	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	HG01884	hp2	a0002	a0002c0004	a0002c0004t0003	a0002c0004t0003g0229	ACB	AFR	ACSS3	chr12	81073079	81266210
ACTA1_chr1_229426245_229439094	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	ACB	AFR	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0007	ACB	AFR	ACTA1	chr1	229426245	229439094
ACTA2_chr10_88930074_88957773	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	ACB	AFR	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0092	ACB	AFR	ACTA2	chr10	88930074	88957773
ACTBL2_chr5_57475018_57487811	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	ACB	AFR	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	HG01884	hp2	a0002	a0002c0004	a0002c0004t0004	a0002c0004t0004g0000	ACB	AFR	ACTBL2	chr5	57475018	57487811
ACTB_chr7_5522148_5535601	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	HG01884	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0006	ACB	AFR	ACTB	chr7	5522148	5535601
ACTC1_chr15_34785230_34800549	HG01884	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0049	ACB	AFR	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0104	ACB	AFR	ACTC1	chr15	34785230	34800549
ACTG2_chr2_73888008_73924865	HG01884	hp1	a0001	a0001c0002	a0001c0002t0009	a0001c0002t0009g0387	ACB	AFR	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	HG01884	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0392	ACB	AFR	ACTG2	chr2	73888008	73924865
ACTL10_chr20_33661943_33673525	HG01884	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0000	ACB	AFR	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	HG01884	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0000	ACB	AFR	ACTL10	chr20	33661943	33673525
ACTL6A_chr3_179557926_179593407	HG01884	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0002	ACB	AFR	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0098	ACB	AFR	ACTL6A	chr3	179557926	179593407
ACTL6B_chr7_100638097_100661448	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0087	ACB	AFR	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0116	ACB	AFR	ACTL6B	chr7	100638097	100661448
ACTL7A_chr9_108857266_108868756	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	ACB	AFR	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	HG01884	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0000	ACB	AFR	ACTL7A	chr9	108857266	108868756
ACTL7B_chr9_108849588_108860986	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	ACB	AFR	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	ACB	AFR	ACTL7B	chr9	108849588	108860986
ACTL9_chr19_8692400_8703795	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	ACB	AFR	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	HG01884	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	ACB	AFR	ACTL9	chr19	8692400	8703795
ACTMAP_chr19_40735861_40755477	HG01884	hp1	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0007	ACB	AFR	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	HG01884	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0002	ACB	AFR	ACTMAP	chr19	40735861	40755477
ACTN1_chr14_68869128_68984302	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0012	ACB	AFR	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	HG01884	hp2	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0124	ACB	AFR	ACTN1	chr14	68869128	68984302
ACTN2_chr1_236681499_236769631	HG01884	hp1	a0001	a0001c0006	a0001c0006t0002	a0001c0006t0002g0049	ACB	AFR	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	HG01884	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0235	ACB	AFR	ACTN2	chr1	236681499	236769631
ACTN3_chr11_66541903_66568334	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0186	ACB	AFR	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	HG01884	hp2	a0004	a0004c0005	a0004c0005t0001	a0004c0005t0001g0012	ACB	AFR	ACTN3	chr11	66541903	66568334
ACTN4_chr19_38642649_38736589	HG01884	hp1	a0001	a0001c0001	a0001c0001t0026	a0001c0001t0026g0287	ACB	AFR	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	HG01884	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0066	ACB	AFR	ACTN4	chr19	38642649	38736589
ACTR10_chr14_58195149_58240636	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0156	ACB	AFR	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	HG01884	hp2	a0001	a0001c0001	a0001c0001t0018	a0001c0001t0018g0019	ACB	AFR	ACTR10	chr14	58195149	58240636
ACTR1B_chr2_97650939_97669044	HG01884	hp1	a0002	a0002c0003	a0002c0003t0005	a0002c0003t0005g0007	ACB	AFR	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	HG01884	hp2	a0002	a0002c0003	a0002c0003t0011	a0002c0003t0011g0058	ACB	AFR	ACTR1B	chr2	97650939	97669044