JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ACTR2_chr2_65222831_65276253	HG01884	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0005	ACB	AFR	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	HG01884	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0050	ACB	AFR	ACTR2	chr2	65222831	65276253
ACTR3B_chr7_152754752_152860378	HG01884	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0209	ACB	AFR	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	HG01884	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0179	ACB	AFR	ACTR3B	chr7	152754752	152860378
ACTR3C_chr7_150242212_150328545	HG01884	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0142	ACB	AFR	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	HG01884	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0247	ACB	AFR	ACTR3C	chr7	150242212	150328545
ACTR3_chr2_113885089_113967596	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0285	ACB	AFR	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	HG01884	hp2	a0001	a0001c0001	a0001c0001t0012	a0001c0001t0012g0056	ACB	AFR	ACTR3	chr2	113885089	113967596
ACTR5_chr20_38743460_38777520	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	ACB	AFR	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	HG01884	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0115	ACB	AFR	ACTR5	chr20	38743460	38777520
ACTR6_chr12_100195815_100229424	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0033	ACB	AFR	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0011	ACB	AFR	ACTR6	chr12	100195815	100229424
ACTR8_chr3_53862066_53887152	HG01884	hp1	a0001	a0001c0002	a0001c0002t0010	a0001c0002t0010g0036	ACB	AFR	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	HG01884	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0028	ACB	AFR	ACTR8	chr3	53862066	53887152
ACTRT2_chr1_3016467_3027903	HG01884	hp1	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0000	ACB	AFR	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	HG01884	hp2	a0004	a0004c0005	a0004c0005t0001	a0004c0005t0001g0000	ACB	AFR	ACTRT2	chr1	3016467	3027903
ACTRT3_chr3_169761921_169774561	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	ACB	AFR	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	HG01884	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0006	ACB	AFR	ACTRT3	chr3	169761921	169774561
ACVR1B_chr12_51946699_52002078	HG01884	hp1	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0012	ACB	AFR	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	HG01884	hp2	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0017	ACB	AFR	ACVR1B	chr12	51946699	52002078
ACVR1C_chr2_157521767_157633864	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0210	ACB	AFR	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	HG01884	hp2	a0002	a0002c0003	a0002c0003t0008	a0002c0003t0008g0080	ACB	AFR	ACVR1C	chr2	157521767	157633864
ACVR1_chr2_157731446_157881330	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0013	ACB	AFR	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	HG01884	hp2	a0001	a0001c0002	a0001c0002t0005	a0001c0002t0005g0002	ACB	AFR	ACVR1	chr2	157731446	157881330
ACVR2A_chr2_147840029_147935822	HG01884	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0081	ACB	AFR	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	HG01884	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0289	ACB	AFR	ACVR2A	chr2	147840029	147935822
ACVR2B_chr3_38448890_38498142	HG01884	hp1	a0001	a0001c0003	a0001c0003t0197	a0001c0003t0197g0118	ACB	AFR	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	HG01884	hp2	a0001	a0001c0001	a0001c0001t0031	a0001c0001t0031g0034	ACB	AFR	ACVR2B	chr3	38448890	38498142
ACVRL1_chr12_51902504_51928361	HG01884	hp1	a0001	a0001c0002	a0001c0002t0013	a0001c0002t0013g0031	ACB	AFR	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	HG01884	hp2	a0001	a0001c0001	a0001c0001t0029	a0001c0001t0029g0040	ACB	AFR	ACVRL1	chr12	51902504	51928361
ACY1_chr3_51978535_51994197	HG01884	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0013	ACB	AFR	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	ACB	AFR	ACY1	chr3	51978535	51994197
ACY3_chr11_67637555_67655730	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	ACB	AFR	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	HG01884	hp2	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0030	ACB	AFR	ACY3	chr11	67637555	67655730
ACYP1_chr14_75048243_75069024	HG01884	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0116	ACB	AFR	ACYP1	chr14	75048243	75069024
ACYP1_chr14_75048243_75069024	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0091	ACB	AFR	ACYP1	chr14	75048243	75069024
ACYP2_chr2_53966113_54310300	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0165	ACB	AFR	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	HG01884	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0260	ACB	AFR	ACYP2	chr2	53966113	54310300
ADA2_chr22_17173790_17224435	HG01884	hp1	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0039	ACB	AFR	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	HG01884	hp2	a0001	a0001c0003	a0001c0003t0004	a0001c0003t0004g0360	ACB	AFR	ADA2	chr22	17173790	17224435
ADAD1_chr4_122374011_122434784	HG01884	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0128	ACB	AFR	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	HG01884	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0067	ACB	AFR	ADAD1	chr4	122374011	122434784
ADAD2_chr16_84186157_84202166	HG01884	hp1	a0003	a0003c0001	a0003c0001t0001	a0003c0001t0001g0003	ACB	AFR	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	HG01884	hp2	a0003	a0003c0001	a0003c0001t0001	a0003c0001t0001g0003	ACB	AFR	ADAD2	chr16	84186157	84202166
ADAM10_chr15_58583809_58754707	HG01884	hp1	a0001	a0001c0001	a0001c0001t0078	a0001c0001t0078g0005	ACB	AFR	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	HG01884	hp2	a0001	a0001c0001	a0001c0001t0040	a0001c0001t0040g0076	ACB	AFR	ADAM10	chr15	58583809	58754707
ADAM11_chr17_44753988_44786846	HG01884	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0184	ACB	AFR	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	HG01884	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0187	ACB	AFR	ADAM11	chr17	44753988	44786846
ADAM15_chr1_155046316_155067775	HG01884	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0002	ACB	AFR	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	HG01884	hp2	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0002	ACB	AFR	ADAM15	chr1	155046316	155067775