| geneid | 80755 |
|---|---|
| ensemblid | ENSG00000266967.7 |
| hgncid | 28417 |
| symbol | AARSD1 |
| name | alanyl-tRNA synthetase domain containing 1 |
| refseq_nuc | NM_001261434.2 |
| refseq_prot | NP_001248363.1 |
| ensembl_nuc | ENST00000427569.7 |
| ensembl_prot | ENSP00000400870.1 |
| mane_status | MANE Select |
| chr | chr17 |
| start | 42950526 |
| end | 42964454 |
| strand | - |
| ver | v1.2 |
| region | chr17:42950526-42964454 |
| region5000 | chr17:42945526-42969454 |
| regionname0 | AARSD1_chr17_42950526_42964454 |
| regionname5000 | AARSD1_chr17_42945526_42969454 |
| chr:pos | ref | alt | af | annotation | impact | samples | AHAPIDS | ACHAPIDS | ACTHAPIDS | ACTGHAPIDS | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr17:42956966
|
C | CT | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(286): Show |
a0001a0002a0003others(4): Show | a0001c0001a0001c0002a0001c0008others(7): Show | a0001c0001t0001a0001c0002t0001a0001c0008t0001others(7): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0003others(124): Show | 289 | 324 | 0.8920 | 1 | AARSD1 | ENSG00000266967.7 | transcript | ENST00000427569.7 | protein_coding | 4/11 | c.389+171dupA | ||||||
|
chr17:42957075
|
C | T | intron_variant | MODIFIER | HG01167.hp2 HG01169.hp2 HG02055.hp1 |
a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0051a0001c0002t0001g0052a0001c0002t0001g0053 | 3 | 324 | 0.0093 | 0 | AARSD1 | ENSG00000266967.7 | transcript | ENST00000427569.7 | protein_coding | 4/11 | c.389+63G>A | ||||||
|
chr17:42958832
|
GC | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(320): Show |
a0001a0002a0003others(5): Show | a0001c0001a0001c0002a0001c0008others(8): Show | a0001c0001t0001a0001c0002t0001a0001c0008t0001others(8): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0003others(151): Show | 323 | 324 | 0.9969 | -1 | AARSD1 | ENSG00000266967.7 | transcript | ENST00000427569.7 | protein_coding | 3/11 | c.332-1638delG | ||||||
|
chr17:42962298
|
CA | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(313): Show |
a0001a0002a0003others(5): Show | a0001c0001a0001c0002a0001c0008others(8): Show | a0001c0001t0001a0001c0002t0001a0001c0008t0001others(8): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0003others(144): Show | 316 | 324 | 0.9753 | -1 | AARSD1 | ENSG00000266967.7 | transcript | ENST00000427569.7 | protein_coding | 2/11 | c.172-948delT | ||||||
|
chr17:42962775
|
T | C | intron_variant | MODIFIER | HG01167.hp2 HG01169.hp2 |
a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0052a0001c0002t0001g0053 | 2 | 324 | 0.0062 | 0 | AARSD1 | ENSG00000266967.7 | transcript | ENST00000427569.7 | protein_coding | 2/11 | c.171+1331A>G | ||||||
|
chr17:42964042
|
G | A | intron_variant | MODIFIER | HG01167.hp2 HG01169.hp2 HG02055.hp1 |
a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0051a0001c0002t0001g0052a0001c0002t0001g0053 | 3 | 324 | 0.0093 | 0 | AARSD1 | ENSG00000266967.7 | transcript | ENST00000427569.7 | protein_coding | 2/11 | c.171+64C>T | ||||||
|
chr17:42964274
|
CAGCCCT | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(320): Show |
a0001a0002a0003others(5): Show | a0001c0001a0001c0002a0001c0008others(8): Show | a0001c0001t0001a0001c0002t0001a0001c0008t0001others(8): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0003others(151): Show | 323 | 324 | 0.9969 | -6 | AARSD1 | ENSG00000266967.7 | transcript | ENST00000427569.7 | protein_coding | 1/11 | c.40-43_40-38delAGGGCT |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
ahapid | alen | total | AFR | AMR | EAS | EUR | SAS | aseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AARSD1 | 1/1 | a0001 | 412 | 312 | 85 | 57 | 115 | 12 | 41 | subcellular location copy fasta | chr17 | 42945526 | 42969454 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
chapid | clen | total | AFR | AMR | EAS | EUR | SAS | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AARSD1 | 1/0 | c0002 | 1239 | 32 | 28 | 3 | 0 | 0 | 0 | copy fasta | chr17 | 42945526 | 42969454 |
| genename | grch38/chm13v2 | thapid | tlen | total | AFR | AMR | EAS | EUR | SAS | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AARSD1 | 1/1 | t0001 | 82 | 324 | 88 | 58 | 122 | 12 | 42 | copy fasta | chr17 | 42945526 | 42969454 |
| genename | grch38/chm13v2 | ghapid | total | AFR | AMR | EAS | EUR | SAS | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|
| AARSD1 | 0/0 | g0052 | 1 | 0 | 1 | 0 | 0 | 0 | chr17 | 42945526 | 42969454 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
achapid | total | AFR | AMR | EAS | EUR | SAS | clen | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AARSD1 | 1/0 | a0001c0002 | 32 | 28 | 3 | 0 | 0 | 0 | 1239 | copy fasta | chr17 | 42945526 | 42969454 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
acthapid | total | AFR | AMR | EAS | EUR | SAS | tlen | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AARSD1 | 1/0 | a0001c0002t0001 | 32 | 28 | 3 | 0 | 0 | 0 | 1320 | copy fasta | chr17 | 42945526 | 42969454 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
actghapid | total | AFR | AMR | EAS | EUR | SAS | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|
| AARSD1 | 0/0 | a0001c0002t0001g0052 | 1 | 0 | 1 | 0 | 0 | 0 | chr17 | 42945526 | 42969454 |
Click to load Haplotype QTL data...
| pos | S. Strand |
E# Exon Number |
max | median | min | diff | type | haplotypeid | max_hap_list | min_hap_list | symbol | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42964402 | - | 1 | -0.6255 | -0.6255 | -0.6255 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42964106 | - | 2 | -0.9924 | -0.9924 | -0.9924 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42964237 | - | 2 | 0.9906 | 0.9906 | 0.9906 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42961192 | - | 3 | -0.9936 | -0.9936 | -0.9936 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42961351 | - | 3 | 0.9971 | 0.9971 | 0.9971 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42957138 | - | 4 | -0.9952 | -0.9952 | -0.9952 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42957195 | - | 4 | 0.9859 | 0.9859 | 0.9859 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42956404 | - | 5 | -0.9983 | -0.9983 | -0.9983 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42956560 | - | 5 | 0.9740 | 0.9740 | 0.9740 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42956204 | - | 6 | -0.9858 | -0.9858 | -0.9858 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42956320 | - | 6 | 0.9935 | 0.9935 | 0.9935 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42955842 | - | 7 | -0.6279 | -0.6279 | -0.6279 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42955972 | - | 7 | 0.7934 | 0.7934 | 0.7934 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42955158 | - | 8 | -0.9990 | -0.9990 | -0.9990 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42955224 | - | 8 | 0.9931 | 0.9931 | 0.9931 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42954876 | - | 9 | -0.9413 | -0.9413 | -0.9413 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42954967 | - | 9 | 0.9347 | 0.9347 | 0.9347 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42953724 | - | 10 | -0.8634 | -0.8634 | -0.8634 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42953778 | - | 10 | 0.7694 | 0.7694 | 0.7694 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42951800 | - | 11 | -0.9828 | -0.9828 | -0.9828 | 0.0000 | acceptor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42951894 | - | 11 | 0.9823 | 0.9822 | 0.9823 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| 42950728 | - | 12 | 0.7485 | 0.7485 | 0.7485 | 0.0000 | donor | a0001c0002t0001g0052 | HG01167.hp2 | HG01167.hp2 | AARSD1 | chr17 | 42945526 | 42969454 |
| pos | annotationhgvs_chgvs_p | clinvarid | clnsig | geneinfo | mc | clndisdb | strand strand
|
ahapid ahapid_count
|
chapid chapid count
|
thapid thapid_count
|
ghapid ghapid_count
|
AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
impact | chr | ref | alt | external |
|---|
| CHR:POS | annotationhgvs_chgvs_p | disease trait-log10podds or beta | AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
study | initial sample size/replication sample size | report genes | mapped gene | strongest snp risk allele | strand strand
|
impact | chr | ref | alt |
|---|
| pos | genenamehgvs_chgvs_pannotation | tissueexpression gene-log10(pval)slope Tissue name in GTEx database(the target eQTL tissue name of the GTEx database)The -log10(nominal pvalue) in GTEx databaseSlope in GTEx database (positive value:alt allele has higher gene expression) |
ahapidchapidthapidghapid ahapid_countchapid_countthapid_countghapid_count
|
AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
af allele frequency in GTEx database |
ms The number of samples with minor allele in GTEx database |
ma The number of minor allele count in GTEx database |
ver GTEx version |
vid Variant ID in GTEx database |
strand strand
|
impact | chr | ref | alt | external |
|---|