| geneid | 23205 |
|---|---|
| ensemblid | ENSG00000103740.10 |
| hgncid | 29567 |
| symbol | ACSBG1 |
| name | acyl-CoA synthetase bubblegum family member 1 |
| refseq_nuc | NM_015162.5 |
| refseq_prot | NP_055977.3 |
| ensembl_nuc | ENST00000258873.9 |
| ensembl_prot | ENSP00000258873.4 |
| mane_status | MANE Select |
| chr | chr15 |
| start | 78167468 |
| end | 78234565 |
| strand | - |
| ver | v1.2 |
| region | chr15:78167468-78234565 |
| region5000 | chr15:78162468-78239565 |
| regionname0 | ACSBG1_chr15_78167468_78234565 |
| regionname5000 | ACSBG1_chr15_78162468_78239565 |
| chr:pos | ref | alt | af | annotation | impact | samples | AHAPIDS | ACHAPIDS | ACTHAPIDS | ACTGHAPIDS | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr15:78173785
|
T | C | 0.5171 | missense_variant | MODERATE | HG00280.hp2 HG00423.hp1 HG00423.hp2 others(178): Show |
a0002a0003a0004others(2): Show | a0002c0002a0002c0003a0002c0005others(10): Show | a0002c0002t0001a0002c0002t0002a0002c0002t0004others(24): Show | a0002c0002t0001g0062a0002c0002t0001g0186a0002c0002t0001g0188others(175): Show | 181 | 350 | 0 | ACSBG1 | ENSG00000103740.10 | transcript | ENST00000258873.9 | protein_coding | 13/14 | c.1897A>G | p.Met633Val | 1961/6215 | 1897/2175 | 633/724 |
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr15:78168251
|
G | A | 0.1657 | 3_prime_UTR_variant | MODIFIER | HG00280.hp2 HG00639.hp1 HG00735.hp2 others(55): Show |
a0002 | a0002c0002a0002c0016a0002c0017 | a0002c0002t0002a0002c0002t0004a0002c0002t0025others(3): Show | a0002c0002t0002g0001a0002c0002t0002g0022a0002c0002t0002g0023others(54): Show | 58 | 350 | 0 | ACSBG1 | ENSG00000103740.10 | transcript | ENST00000258873.9 | protein_coding | 14/14 | c.*3193C>T | 3193 | |||||
|
chr15:78168257
|
TA | T | 0.1714 | 3_prime_UTR_variant | MODIFIER | HG00280.hp2 HG00639.hp1 HG00735.hp2 others(57): Show |
a0002a0003 | a0002c0002a0002c0016a0002c0017others(1): Show | a0002c0002t0002a0002c0002t0004a0002c0002t0024others(5): Show | a0002c0002t0002g0001a0002c0002t0002g0022a0002c0002t0002g0023others(56): Show | 60 | 350 | -1 | ACSBG1 | ENSG00000103740.10 | transcript | ENST00000258873.9 | protein_coding | 14/14 | c.*3186delT | 3186 | |||||
|
chr15:78170176
|
C | T | 0.1057 | 3_prime_UTR_variant | MODIFIER | HG00280.hp2 HG00639.hp1 HG00735.hp2 others(34): Show |
a0002 | a0002c0002a0002c0016 | a0002c0002t0002a0002c0002t0031a0002c0016t0002 | a0002c0002t0002g0001a0002c0002t0002g0022a0002c0002t0002g0023others(33): Show | 37 | 350 | 0 | ACSBG1 | ENSG00000103740.10 | transcript | ENST00000258873.9 | protein_coding | 14/14 | c.*1268G>A | 1268 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
ahapid | alen | total | AFR | AMR | EAS | EUR | SAS | aseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ACSBG1 | 0/1 | a0002 | 724 | 152 | 47 | 31 | 49 | 4 | 20 | subcellular location copy fasta | chr15 | 78162468 | 78239565 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
chapid | clen | total | AFR | AMR | EAS | EUR | SAS | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ACSBG1 | 0/1 | c0002 | 2175 | 70 | 34 | 20 | 2 | 3 | 10 | copy fasta | chr15 | 78162468 | 78239565 |
| genename | grch38/chm13v2 | thapid | tlen | total | AFR | AMR | EAS | EUR | SAS | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ACSBG1 | 0/1 | t0002 | 4040 | 36 | 5 | 17 | 1 | 2 | 10 | copy fasta | chr15 | 78162468 | 78239565 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
achapid | total | AFR | AMR | EAS | EUR | SAS | clen | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ACSBG1 | 0/1 | a0002c0002 | 70 | 34 | 20 | 2 | 3 | 10 | 2175 | copy fasta | chr15 | 78162468 | 78239565 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
acthapid | total | AFR | AMR | EAS | EUR | SAS | tlen | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ACSBG1 | 0/1 | a0002c0002t0002 | 35 | 5 | 17 | 1 | 2 | 9 | 6214 | copy fasta | chr15 | 78162468 | 78239565 |
Click to load Haplotype QTL data...
| pos | S. Strand |
E# Exon Number |
max | median | min | diff | type | haplotypeid | max_hap_list | min_hap_list | symbol | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78234371 | - | 1 | -0.7795 | -0.7662 | -0.7536 | 0.0259 | acceptor | a0002c0002t0002 | HG00735.hp2 | HG03688.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78208002 | - | 2 | -0.9767 | -0.9709 | -0.9693 | 0.0074 | acceptor | a0002c0002t0002 | HG01261.hp2 HG01361.hp1 HG01496.hp2 |
HG01099.hp2 HG01516.hp1 |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78208102 | - | 2 | 0.9325 | 0.9221 | 0.9182 | 0.0143 | donor | a0002c0002t0002 | HG02559.hp1 | HG02735.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78194506 | - | 3 | -0.9989 | -0.9989 | -0.9988 | 0.0001 | acceptor | a0002c0002t0002 | HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01074.hp1 HG01074.hp2 others(28): Show |
HG03688.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78194726 | - | 3 | 0.9750 | 0.9745 | 0.9741 | 0.0008 | donor | a0002c0002t0002 | HG03688.hp2 | HG00741.hp1 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78193932 | - | 4 | -0.9945 | -0.9945 | -0.9938 | 0.0008 | acceptor | a0002c0002t0002 | HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01074.hp1 HG01074.hp2 others(26): Show |
HG01071.hp1 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78194020 | - | 4 | 0.8069 | 0.8044 | 0.8022 | 0.0046 | donor | a0002c0002t0002 | HG01071.hp1 | HG03688.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78193506 | - | 5 | -0.9749 | -0.9748 | -0.9737 | 0.0013 | acceptor | a0002c0002t0002 | HG01071.hp1 | HG03688.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78193626 | - | 5 | 0.9981 | 0.9981 | 0.9981 | 0.0000 | donor | a0002c0002t0002 | HG01071.hp1 | HG03688.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78182705 | - | 6 | -0.9829 | -0.9824 | -0.9823 | 0.0006 | acceptor | a0002c0002t0002 | HG02738.hp2 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78182785 | - | 6 | 0.9964 | 0.9963 | 0.9962 | 0.0002 | donor | a0002c0002t0002 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
HG03688.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78182466 | - | 7 | -0.9956 | -0.9956 | -0.9955 | 0.0001 | acceptor | a0002c0002t0002 | HG00735.hp2 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78182615 | - | 7 | 0.9955 | 0.9954 | 0.9954 | 0.0001 | donor | a0002c0002t0002 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
HG03688.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78181969 | - | 8 | -0.9978 | -0.9977 | -0.9977 | 0.0000 | acceptor | a0002c0002t0002 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
HG00735.hp2 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78182145 | - | 8 | 0.9919 | 0.9919 | 0.9919 | 0.0001 | donor | a0002c0002t0002 | HG00735.hp2 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78180755 | - | 9 | -0.9903 | -0.9903 | -0.9897 | 0.0006 | acceptor | a0002c0002t0002 | HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 others(24): Show |
HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78180936 | - | 9 | 0.9970 | 0.9970 | 0.9969 | 0.0001 | donor | a0002c0002t0002 | HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 others(24): Show |
HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78179550 | - | 10 | -0.9977 | -0.9977 | -0.9977 | 0.0000 | acceptor | a0002c0002t0002 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 others(24): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78179780 | - | 10 | 0.9943 | 0.9942 | 0.9942 | 0.0001 | donor | a0002c0002t0002 | HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 others(24): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78178614 | - | 11 | -0.9992 | -0.9992 | -0.9992 | 0.0000 | acceptor | a0002c0002t0002 | HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 others(30): Show |
HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 others(30): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78178831 | - | 11 | 0.9898 | 0.9898 | 0.9897 | 0.0000 | donor | a0002c0002t0002 | HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01071.hp1 HG01074.hp1 others(24): Show |
HG01167.hp2 HG01192.hp1 HG01496.hp2 HG03017.hp2 HG03704.hp1 others(1): Show |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78174385 | - | 12 | -0.9741 | -0.9711 | -0.9652 | 0.0089 | acceptor | a0002c0002t0002 | HG01346.hp1 HG02280.hp1 HG02559.hp1 NA19240.hp2 |
HG01071.hp1 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78174524 | - | 12 | 0.7789 | 0.7682 | 0.7593 | 0.0196 | donor | a0002c0002t0002 | HG03491.hp1 | HG01071.hp1 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78173593 | - | 13 | -0.9962 | -0.9961 | -0.9960 | 0.0002 | acceptor | a0002c0002t0002 | HG01074.hp1 HG01074.hp2 |
HG01071.hp1 | ACSBG1 | chr15 | 78162468 | 78239565 |
| 78173839 | - | 13 | 0.9787 | 0.9785 | 0.9764 | 0.0023 | donor | a0002c0002t0002 | HG02148.hp1 NA19077.hp2 |
HG01346.hp1 HG02280.hp1 HG02559.hp1 NA19240.hp2 |
ACSBG1 | chr15 | 78162468 | 78239565 |
| 78171529 | - | 14 | 0.9777 | 0.9776 | 0.9770 | 0.0007 | donor | a0002c0002t0002 | HG03688.hp2 | HG01346.hp1 HG02280.hp1 HG02559.hp1 NA19240.hp2 |
ACSBG1 | chr15 | 78162468 | 78239565 |
| CHR:POS | annotationhgvs_chgvs_p | disease trait-log10podds or beta | AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
study | initial sample size/replication sample size | report genes | mapped gene | strongest snp risk allele | strand strand
|
impact | chr | ref | alt |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr15:78231857
|
c.131+2514T>C |
Suicide attempts in schizophrenia1.31578 others(2): Show |
a0001a0002a0003a0005a0006others(1): Show | a0001c0001a0001c0006a0002c0002a0002c0003a0002c0005others(5): Show | a0001c0001t0001a0001c0001t0007a0001c0001t0016a0001c0001t0017a0001c0001t0022others(18): Show | a0001c0001t0001g0185a0001c0001t0001g0195a0001c0001t0001g0197a0001c0001t0001g0198a0001c0001t0001g0200others(81): Show | HG00423.hp1 HG00558.hp1 HG00597.hp2 HG00609.hp2 HG00642.hp1 others(83): Show |
GWAS of Suicide Attempt in Psychiatric Disorders a others(59): Show |
1,683 European ancestry attempters, 2,946 European others(24): Show |
NR | ACSBG1 | rs57729539-G | - | MODIFIER | chr15 | A | G |
|
chr15:78238598
|
c.-4097C>T | Personality dimensions0.1 | a0001a0002a0003a0004a0005others(5): Show | a0001c0001a0001c0006a0001c0008a0001c0013a0001c0021others(15): Show | a0001c0001t0001a0001c0001t0007a0001c0001t0008a0001c0001t0012a0001c0001t0013others(41): Show | a0001c0001t0001g0003a0001c0001t0001g0008a0001c0001t0001g0047a0001c0001t0001g0050a0001c0001t0001g0067others(219): Show | HG00280.hp2 HG00423.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp2 others(222): Show |
A genome-wide association study of Cloninger's tem others(75): Show |
5,117 European ancestry individuals from 2567 fami others(5): Show |
ACSBG1 | ACSBG1 | rs1533665-G | - | MODIFIER | chr15 | G | A |
|
chr15:78237919
|
c.-3418G>A | Reticulocyte side fluorescence0.0586569 | a0001a0002a0003 | a0001c0001a0001c0021a0002c0002a0002c0003a0002c0005others(1): Show | a0001c0001t0001a0001c0001t0012a0001c0001t0022a0001c0001t0029a0001c0001t0030others(9): Show | a0001c0001t0001g0074a0001c0001t0001g0075a0001c0001t0001g0078a0001c0001t0001g0081a0001c0001t0001g0084others(40): Show | HG00280.hp2 HG00558.hp2 HG00642.hp2 HG00738.hp1 HG00741.hp2 others(41): Show |
A genome-wide association study of blood cell morp others(68): Show |
30,485 European ancestry individuals/ | ACSBG1 | rs12910114-T | - | MODIFIER | chr15 | C | T | |
|
chr15:78236196
|
c.-1695G>A | Interleukin-16 levels0.03498062 | a0001a0002a0003a0004a0005others(5): Show | a0001c0001a0001c0006a0001c0008a0001c0013a0001c0021others(15): Show | a0001c0001t0001a0001c0001t0007a0001c0001t0008a0001c0001t0012a0001c0001t0013others(41): Show | a0001c0001t0001g0003a0001c0001t0001g0008a0001c0001t0001g0047a0001c0001t0001g0050a0001c0001t0001g0067others(225): Show | HG00280.hp2 HG00423.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp2 others(228): Show |
The genomic architecture of circulating cytokine l others(57): Show |
69,973 European ancestry individuals/ | ACSBG1 | rs12708524-? | - | MODIFIER | chr15 | C | T | |
|
chr15:78233975
|
c.131+396G>A | CCL28 levels4.76 | a0001a0002 | a0001c0001a0002c0002a0002c0003a0002c0005a0002c0009others(1): Show | a0001c0001t0001a0001c0001t0007a0002c0002t0002a0002c0002t0004a0002c0003t0001others(4): Show | a0001c0001t0001g0009a0001c0001t0001g0010a0001c0001t0001g0013a0001c0001t0001g0014a0001c0001t0001g0015others(35): Show | HG00639.hp2 HG00673.hp2 HG00735.hp2 HG00738.hp2 HG00741.hp1 others(36): Show |
Sex-biased genetic regulation of inflammatory prot others(29): Show |
318 European ancestry males/ | ACSBG1 | rs80071140-? | - | MODIFIER | chr15 | C | T | |
|
chr15:78237919
|
c.-3418G>A | Platelet count0.0137 | a0001a0002a0003 | a0001c0001a0001c0021a0002c0002a0002c0003a0002c0005others(1): Show | a0001c0001t0001a0001c0001t0012a0001c0001t0022a0001c0001t0029a0001c0001t0030others(9): Show | a0001c0001t0001g0074a0001c0001t0001g0075a0001c0001t0001g0078a0001c0001t0001g0081a0001c0001t0001g0084others(40): Show | HG00280.hp2 HG00558.hp2 HG00642.hp2 HG00738.hp1 HG00741.hp2 others(41): Show |
A cross-population atlas of genetic associations f others(24): Show |
350,474 European ancestry individuals, 148,623 Eas others(29): Show |
ACSBG1 | rs12910114-T | - | MODIFIER | chr15 | C | T |