| geneid | 144568 |
|---|---|
| ensemblid | ENSG00000166535.20 |
| hgncid | 23336 |
| symbol | A2ML1 |
| name | alpha-2-macroglobulin like 1 |
| refseq_nuc | NM_144670.6 |
| refseq_prot | NP_653271.3 |
| ensembl_nuc | ENST00000299698.12 |
| ensembl_prot | ENSP00000299698.7 |
| mane_status | MANE Select |
| chr | chr12 |
| start | 8822621 |
| end | 8876787 |
| strand | + |
| ver | v1.2 |
| region | chr12:8822621-8876787 |
| region5000 | chr12:8817621-8881787 |
| regionname0 | A2ML1_chr12_8822621_8876787 |
| regionname5000 | A2ML1_chr12_8817621_8881787 |
| chr:pos | ref | alt | af | annotation | impact | samples | AHAPIDS | ACHAPIDS | ACTHAPIDS | ACTGHAPIDS | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr12:8852296
|
C | A | 0.9511 | missense_variant | MODERATE | HG00099.hp1 HG00099.hp2 HG00280.hp1 others(347): Show |
a0001a0002a0003others(32): Show | a0001c0001a0001c0002a0001c0006others(60): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(77): Show | a0001c0001t0001g0040a0001c0001t0001g0053a0001c0001t0001g0057others(340): Show | 350 | 368 | 0 | A2ML1 | ENSG00000166535.20 | transcript | ENST00000299698.12 | protein_coding | 20/36 | c.2550C>A | p.Asp850Glu | 2581/5127 | 2550/4365 | 850/1454 | ||
|
chr12:8863977
|
A | G | 0.9511 | missense_variant | MODERATE | HG00099.hp1 HG00099.hp2 HG00280.hp1 others(347): Show |
a0001a0002a0003others(34): Show | a0001c0001a0001c0002a0001c0006others(62): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(80): Show | a0001c0001t0001g0040a0001c0001t0001g0053a0001c0001t0001g0057others(340): Show | 350 | 368 | 0 | A2ML1 | ENSG00000166535.20 | transcript | ENST00000299698.12 | protein_coding | 29/36 | c.3686A>G | p.His1229Arg | 3717/5127 | 3686/4365 | 1229/1454 |
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr12:8858075
|
G | A | 0.1929 | synonymous_variant | LOW | HG00099.hp1 HG00423.hp2 HG00609.hp2 others(68): Show |
a0002a0003a0004others(5): Show | a0002c0004a0002c0007a0003c0005others(12): Show | a0002c0004t0001a0002c0004t0003a0002c0007t0001others(17): Show | a0002c0004t0001g0299a0002c0004t0001g0338a0002c0004t0003g0002others(65): Show | 71 | 368 | 0 | A2ML1 | ENSG00000166535.20 | transcript | ENST00000299698.12 | protein_coding | 26/36 | c.3237G>A | p.Val1079Val | 3268/5127 | 3237/4365 | 1079/1454 | ||
|
chr12:8867967
|
T | C | 0.0598 | synonymous_variant | LOW | HG01167.hp2 HG01168.hp1 HG01169.hp1 others(19): Show |
a0004a0010a0015others(4): Show | a0004c0014a0004c0029a0004c0040others(11): Show | a0004c0014t0004a0004c0029t0004a0004c0040t0004others(11): Show | a0004c0014t0004g0159a0004c0014t0004g0215a0004c0014t0004g0237others(18): Show | 22 | 368 | 0 | A2ML1 | ENSG00000166535.20 | transcript | ENST00000299698.12 | protein_coding | 30/36 | c.3843T>C | p.Val1281Val | 3874/5127 | 3843/4365 | 1281/1454 |
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr12:8876093
|
AT | A | 0.6630 | 3_prime_UTR_variant | MODIFIER | HG00099.hp1 HG00280.hp1 HG00280.hp2 others(241): Show |
a0001a0002a0003others(26): Show | a0001c0001a0001c0002a0001c0008others(47): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0006others(59): Show | a0001c0001t0001g0040a0001c0001t0001g0053a0001c0001t0001g0057others(235): Show | 244 | 368 | -1 | A2ML1 | ENSG00000166535.20 | transcript | ENST00000299698.12 | protein_coding | 36/36 | c.*40delT | 1085 | INFO_REALIGN_3_PRIME |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
ahapid | alen | total | AFR | AMR | EAS | EUR | SAS | aseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A2ML1 | 0/0 | a0004 | 1454 | 12 | 7 | 5 | 0 | 0 | 0 | subcellular location copy fasta | chr12 | 8817621 | 8881787 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
chapid | clen | total | AFR | AMR | EAS | EUR | SAS | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A2ML1 | 0/0 | c0029 | 4365 | 2 | 0 | 2 | 0 | 0 | 0 | copy fasta | chr12 | 8817621 | 8881787 |
| genename | grch38/chm13v2 | thapid | tlen | total | AFR | AMR | EAS | EUR | SAS | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A2ML1 | 0/0 | t0004 | 761 | 23 | 16 | 5 | 0 | 0 | 2 | copy fasta | chr12 | 8817621 | 8881787 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
achapid | total | AFR | AMR | EAS | EUR | SAS | clen | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A2ML1 | 0/0 | a0004c0029 | 2 | 0 | 2 | 0 | 0 | 0 | 4365 | copy fasta | chr12 | 8817621 | 8881787 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
acthapid | total | AFR | AMR | EAS | EUR | SAS | tlen | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A2ML1 | 0/0 | a0004c0029t0004 | 2 | 0 | 2 | 0 | 0 | 0 | 5125 | copy fasta | chr12 | 8817621 | 8881787 |
Click to load Haplotype QTL data...
| pos | S. Strand |
E# Exon Number |
max | median | min | diff | type | haplotypeid | max_hap_list | min_hap_list | symbol | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8822713 | + | 1 | -0.1472 | -0.1472 | -0.1472 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8823182 | + | 2 | 0.5041 | 0.5041 | 0.5041 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8823365 | + | 2 | -0.4299 | -0.4299 | -0.4299 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8823720 | + | 3 | 0.7752 | 0.7752 | 0.7752 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8823882 | + | 3 | -0.9690 | -0.9690 | -0.9690 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8829727 | + | 4 | 0.9759 | 0.9759 | 0.9759 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8829779 | + | 4 | -0.9904 | -0.9904 | -0.9904 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8834662 | + | 5 | 0.9426 | 0.9426 | 0.9426 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8834682 | + | 5 | -0.9661 | -0.9661 | -0.9661 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8835507 | + | 6 | 0.3149 | 0.3149 | 0.3149 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8835666 | + | 6 | -0.2278 | -0.2278 | -0.2278 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8836255 | + | 7 | 0.7977 | 0.7977 | 0.7977 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8836339 | + | 7 | -0.7796 | -0.7795 | -0.7796 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8837440 | + | 8 | 0.9790 | 0.9790 | 0.9790 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8837566 | + | 8 | -0.9905 | -0.9905 | -0.9905 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8838336 | + | 9 | 0.9963 | 0.9963 | 0.9963 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8838450 | + | 9 | -0.9963 | -0.9963 | -0.9963 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8839113 | + | 10 | 0.9980 | 0.9980 | 0.9980 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8839222 | + | 10 | -0.9993 | -0.9993 | -0.9993 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8841369 | + | 11 | 0.9962 | 0.9962 | 0.9962 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8841536 | + | 11 | -0.9987 | -0.9987 | -0.9987 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8843134 | + | 12 | 0.9984 | 0.9984 | 0.9984 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8843361 | + | 12 | -0.9888 | -0.9888 | -0.9888 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8845442 | + | 13 | 0.9894 | 0.9894 | 0.9894 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8845502 | + | 13 | -0.9807 | -0.9807 | -0.9807 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8846077 | + | 14 | 0.9885 | 0.9885 | 0.9885 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8846222 | + | 14 | -0.9953 | -0.9953 | -0.9953 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8847549 | + | 15 | 0.9851 | 0.9851 | 0.9851 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8847698 | + | 15 | -0.9733 | -0.9733 | -0.9733 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8848720 | + | 16 | 0.9954 | 0.9954 | 0.9954 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8848914 | + | 16 | -0.9959 | -0.9959 | -0.9959 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8849669 | + | 17 | 0.9832 | 0.9831 | 0.9832 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8849759 | + | 17 | -0.9702 | -0.9702 | -0.9702 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8850160 | + | 18 | 0.9810 | 0.9810 | 0.9810 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8850274 | + | 18 | -0.9926 | -0.9926 | -0.9926 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8851784 | + | 19 | 0.9520 | 0.9520 | 0.9520 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8852012 | + | 19 | -0.9405 | -0.9405 | -0.9405 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8852210 | + | 20 | 0.8639 | 0.8639 | 0.8639 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8852336 | + | 20 | -0.9773 | -0.9773 | -0.9773 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8854128 | + | 21 | 0.9899 | 0.9899 | 0.9899 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8854249 | + | 21 | -0.9346 | -0.9346 | -0.9346 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8854780 | + | 22 | 0.9124 | 0.9124 | 0.9124 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8854831 | + | 22 | -0.8632 | -0.8632 | -0.8632 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8855509 | + | 23 | 0.9854 | 0.9854 | 0.9854 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8855592 | + | 23 | -0.9700 | -0.9699 | -0.9700 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8857164 | + | 24 | 0.9974 | 0.9974 | 0.9974 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8857340 | + | 24 | -0.9989 | -0.9989 | -0.9989 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8857507 | + | 25 | 0.9731 | 0.9731 | 0.9731 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8857588 | + | 25 | -0.9726 | -0.9726 | -0.9726 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8857946 | + | 26 | 0.9832 | 0.9832 | 0.9832 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8858102 | + | 26 | -0.9952 | -0.9952 | -0.9952 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8860881 | + | 27 | 0.9958 | 0.9958 | 0.9958 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8860955 | + | 27 | -0.9929 | -0.9929 | -0.9929 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8861135 | + | 28 | 0.9962 | 0.9962 | 0.9962 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8861297 | + | 28 | -0.9966 | -0.9966 | -0.9966 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8863794 | + | 29 | 0.9960 | 0.9960 | 0.9960 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8864008 | + | 29 | -0.9990 | -0.9990 | -0.9990 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8867842 | + | 30 | 0.9949 | 0.9949 | 0.9949 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8868057 | + | 30 | -0.9954 | -0.9954 | -0.9954 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8868230 | + | 31 | 0.5552 | 0.5552 | 0.5552 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8868357 | + | 31 | -0.4124 | -0.4124 | -0.4124 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8868537 | + | 32 | 0.9950 | 0.9950 | 0.9950 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8868627 | + | 32 | -0.9852 | -0.9852 | -0.9852 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8869135 | + | 33 | 0.9915 | 0.9915 | 0.9915 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8869203 | + | 33 | -0.9903 | -0.9903 | -0.9903 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8874425 | + | 34 | 0.9946 | 0.9946 | 0.9946 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8874527 | + | 34 | -0.9958 | -0.9958 | -0.9958 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8874971 | + | 35 | 0.9895 | 0.9895 | 0.9895 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8875012 | + | 35 | -0.9958 | -0.9958 | -0.9958 | 0.0000 | acceptor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| 8876058 | + | 36 | 0.2915 | 0.2915 | 0.2915 | 0.0000 | donor | a0004c0029t0004 | HG01167.hp2 HG01169.hp2 |
HG01167.hp2 HG01169.hp2 |
A2ML1 | chr12 | 8817621 | 8881787 |
| CHR:POS | annotationhgvs_chgvs_p | disease trait-log10podds or beta | AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
study | initial sample size/replication sample size | report genes | mapped gene | strongest snp risk allele | strand strand
|
impact | chr | ref | alt |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr12:8881276
|
c.*5220G>T | Gut microbial network clusters (Purple (at 1 year) x Vaginal Birth interactionothers(42): Show | a0001a0002a0003a0004a0005others(36): Show | a0001c0001a0001c0002a0001c0006a0001c0008a0001c0035others(64): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0006a0001c0001t0008others(83): Show | a0001c0001t0001g0040a0001c0001t0001g0053a0001c0001t0001g0057a0001c0001t0001g0064a0001c0001t0001g0065others(334): Show | HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00408.hp2 others(341): Show |
Gene-by-environment interactions modulate the infa others(38): Show |
up to 688 European ancestry, South Asian ancestry, others(238): Show |
A2ML1 | rs4883196-G | + | MODIFIER | chr12 | G | T |