| geneid | 19 |
|---|---|
| ensemblid | ENSG00000165029.17 |
| hgncid | 29 |
| symbol | ABCA1 |
| name | ATP binding cassette subfamily A member 1 |
| refseq_nuc | NM_005502.4 |
| refseq_prot | NP_005493.2 |
| ensembl_nuc | ENST00000374736.8 |
| ensembl_prot | ENSP00000363868.3 |
| mane_status | MANE Select |
| chr | chr9 |
| start | 104781006 |
| end | 104928155 |
| strand | - |
| ver | v1.2 |
| region | chr9:104781006-104928155 |
| region5000 | chr9:104776006-104933155 |
| regionname0 | ABCA1_chr9_104781006_104928155 |
| regionname5000 | ABCA1_chr9_104776006_104933155 |
| chr:pos | ref | alt | af | annotation | impact | samples | AHAPIDS | ACHAPIDS | ACTHAPIDS | ACTGHAPIDS | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr9:104824472
|
T | C | 0.4560 | missense_variant | MODERATE | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(142): Show |
a0002a0003a0006others(14): Show | a0002c0011a0002c0015a0002c0017others(49): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(99): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(142): Show | 145 | 318 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 18/50 | c.2649A>G | p.Ile883Met | 2962/10408 | 2649/6786 | 883/2261 |
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr9:104828991
|
G | T | 0.4371 | synonymous_variant | LOW | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(136): Show |
a0001a0002a0003others(13): Show | a0001c0092a0002c0011a0002c0015others(44): Show | a0001c0092t0012a0002c0011t0004a0002c0011t0007others(93): Show | a0001c0092t0012g0220a0002c0011t0004g0112a0002c0011t0004g0213others(136): Show | 139 | 318 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/50 | c.2040C>A | p.Ile680Ile | 2353/10408 | 2040/6786 | 680/2261 |
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr9:104782025
|
C | T | 0.0031 | 3_prime_UTR_variant | MODIFIER | HG00609.hp1 | a0012 | a0012c0040 | a0012c0040t0040 | a0012c0040t0040g0055 | 1 | 318 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 50/50 | c.*2290G>A | 2290 | |||||
|
chr9:104782419
|
C | T | 0.8585 | 3_prime_UTR_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(270): Show |
a0001a0002a0003others(34): Show | a0001c0001a0001c0005a0001c0035others(106): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(174): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(270): Show | 273 | 318 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 50/50 | c.*1896G>A | 1896 |
| chr:pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr9:104784743
|
G | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(244): Show |
a0001a0002a0003others(33): Show | a0001c0001a0001c0005a0001c0035others(96): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(157): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(244): Show | 247 | 318 | 0.7767 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 49/49 | c.6646-288C>T | ||||||
|
chr9:104786094
|
C | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(303): Show |
a0001a0002a0003others(35): Show | a0001c0001a0001c0005a0001c0035others(109): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(203): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(303): Show | 306 | 318 | 0.9623 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 48/49 | c.6401+204G>T | ||||||
|
chr9:104786212
|
G | T | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(303): Show |
a0001a0002a0003others(35): Show | a0001c0001a0001c0005a0001c0035others(109): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(203): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(303): Show | 306 | 318 | 0.9623 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 48/49 | c.6401+86C>A | ||||||
|
chr9:104788358
|
A | G | intron_variant | MODIFIER | HG00408.hp1 HG00408.hp2 HG00423.hp1 others(121): Show |
a0001a0002a0003others(18): Show | a0001c0001a0001c0005a0001c0108others(41): Show | a0001c0001t0002a0001c0005t0001a0001c0005t0002others(78): Show | a0001c0001t0002g0233a0001c0005t0001g0050a0001c0005t0002g0017others(121): Show | 124 | 318 | 0.3899 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 45/49 | c.6069+68T>C | ||||||
|
chr9:104788966
|
A | C | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp2 HG00609.hp1 others(38): Show |
a0001a0002a0003others(8): Show | a0001c0005a0002c0011a0002c0037others(14): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0012others(31): Show | a0001c0005t0004g0167a0002c0011t0004g0213a0002c0011t0004g0263others(38): Show | 41 | 318 | 0.1289 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5928-399T>G | ||||||
|
chr9:104789445
|
T | A | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(78): Show |
a0002a0003a0004others(10): Show | a0002c0011a0002c0015a0002c0017others(41): Show | a0002c0011t0004a0002c0011t0020a0002c0015t0002others(64): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(78): Show | 81 | 318 | 0.2547 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5928-878A>T | ||||||
|
chr9:104789771
|
C | CCACT | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(78): Show |
a0002a0003a0004others(10): Show | a0002c0011a0002c0015a0002c0017others(41): Show | a0002c0011t0004a0002c0011t0020a0002c0015t0002others(64): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(78): Show | 81 | 318 | 0.2547 | 4 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5927+1147_5927+1150dupAGTG | ||||||
|
chr9:104790096
|
C | CA | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(92): Show |
a0001a0002a0003others(11): Show | a0001c0005a0002c0011a0002c0017others(36): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(69): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(92): Show | 95 | 318 | 0.2987 | 1 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5927+825dupT | ||||||
|
chr9:104790414
|
G | A | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(115): Show |
a0001a0002a0003others(12): Show | a0001c0005a0002c0011a0002c0015others(49): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(90): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(115): Show | 118 | 318 | 0.3711 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5927+508C>T | ||||||
|
chr9:104790643
|
A | G | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(115): Show |
a0001a0002a0003others(12): Show | a0001c0005a0002c0011a0002c0015others(49): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(90): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(115): Show | 118 | 318 | 0.3711 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5927+279T>C | ||||||
|
chr9:104790658
|
A | G | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(115): Show |
a0001a0002a0003others(12): Show | a0001c0005a0002c0011a0002c0015others(49): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(90): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(115): Show | 118 | 318 | 0.3711 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5927+264T>C | ||||||
|
chr9:104790904
|
A | G | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(119): Show |
a0001a0002a0003others(15): Show | a0001c0005a0002c0011a0002c0015others(53): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(94): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(119): Show | 122 | 318 | 0.3837 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 44/49 | c.5927+18T>C | ||||||
|
chr9:104791197
|
A | T | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(117): Show |
a0001a0002a0003others(14): Show | a0001c0005a0002c0011a0002c0015others(51): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(92): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(117): Show | 120 | 318 | 0.3774 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 43/49 | c.5821-169T>A | ||||||
|
chr9:104791243
|
A | G | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(113): Show |
a0001a0002a0003others(13): Show | a0001c0005a0002c0011a0002c0015others(50): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(90): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(113): Show | 116 | 318 | 0.3648 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 43/49 | c.5821-215T>C | ||||||
|
chr9:104791503
|
G | GGCTCACT | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(114): Show |
a0001a0002a0003others(13): Show | a0001c0005a0002c0011a0002c0015others(51): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(91): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(114): Show | 117 | 318 | 0.3679 | 7 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 43/49 | c.5820+432_5820+433insAGTGAGC | ||||||
|
chr9:104791788
|
C | T | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(115): Show |
a0001a0002a0003others(13): Show | a0001c0005a0002c0011a0002c0015others(51): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(92): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(115): Show | 118 | 318 | 0.3711 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 43/49 | c.5820+148G>A | ||||||
|
chr9:104792240
|
T | C | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(115): Show |
a0001a0002a0003others(13): Show | a0001c0005a0002c0011a0002c0015others(51): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(92): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(115): Show | 118 | 318 | 0.3711 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 42/49 | c.5758-242A>G | ||||||
|
chr9:104792463
|
A | G | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(40): Show |
a0002a0003a0004others(6): Show | a0002c0011a0002c0017a0002c0037others(17): Show | a0002c0011t0004a0002c0011t0020a0002c0017t0026others(31): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(40): Show | 43 | 318 | 0.1352 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 42/49 | c.5757+323T>C | ||||||
|
chr9:104792464
|
A | T | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(115): Show |
a0001a0002a0003others(13): Show | a0001c0005a0002c0011a0002c0015others(51): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(92): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(115): Show | 118 | 318 | 0.3711 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 42/49 | c.5757+322T>A | ||||||
|
chr9:104793430
|
C | G | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(90): Show |
a0001a0002a0003others(10): Show | a0001c0005a0002c0011a0002c0017others(37): Show | a0001c0005t0004a0002c0011t0004a0002c0011t0007others(69): Show | a0001c0005t0004g0167a0002c0011t0004g0112a0002c0011t0004g0213others(90): Show | 93 | 318 | 0.2925 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 40/49 | c.5507-130G>C | ||||||
|
chr9:104794512
|
T | TA | splice_region_variant others(1): Show |
LOW | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(77): Show |
a0002a0004a0005others(14): Show | a0002c0011a0002c0024a0002c0032others(40): Show | a0002c0011t0004a0002c0024t0008a0002c0032t0001others(58): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0024t0008g0003others(77): Show | 80 | 318 | 0.2516 | 1 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 39/49 | c.5383-3dupT | ||||||
|
chr9:104794896
|
T | C | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(36): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(14): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(28): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(36): Show | 39 | 318 | 0.1226 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 39/49 | c.5383-386A>G | ||||||
|
chr9:104795584
|
A | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(299): Show |
a0001a0002a0003others(35): Show | a0001c0001a0001c0005a0001c0035others(107): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(198): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(299): Show | 302 | 318 | 0.9497 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 39/49 | c.5382+469T>C | ||||||
|
chr9:104796702
|
C | A | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(32): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(10): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(24): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(32): Show | 35 | 318 | 0.1101 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 37/49 | c.5122-278G>T | ||||||
|
chr9:104796778
|
G | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(274): Show |
a0001a0002a0003others(25): Show | a0001c0001a0001c0005a0001c0035others(90): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(180): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(274): Show | 277 | 318 | 0.8711 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 37/49 | c.5122-354C>T | ||||||
|
chr9:104797198
|
T | C | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(32): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(10): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(24): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(32): Show | 35 | 318 | 0.1101 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 37/49 | c.5122-774A>G | ||||||
|
chr9:104798010
|
G | A | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(35): Show |
a0002a0004a0005others(4): Show | a0002c0011a0002c0037a0004c0008others(13): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(27): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(35): Show | 38 | 318 | 0.1195 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 37/49 | c.5121+411C>T | ||||||
|
chr9:104799394
|
TCACACAC others(1): Show |
T | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG01081.hp2 others(12): Show |
a0004a0005a0007others(2): Show | a0004c0008a0004c0113a0005c0070others(6): Show | a0004c0008t0003a0004c0113t0002a0005c0070t0001others(11): Show | a0004c0008t0003g0289a0004c0113t0002g0159a0005c0070t0001g0316others(12): Show | 15 | 318 | 0.0472 | -8 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 36/49 | c.4943+417_4943+424delTGTGTGTG | ||||||
|
chr9:104800946
|
T | C | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(36): Show |
a0002a0004a0005others(4): Show | a0002c0011a0002c0037a0004c0008others(14): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(28): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(36): Show | 39 | 318 | 0.1226 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 34/49 | c.4699-362A>G | ||||||
|
chr9:104801116
|
T | TAAAA | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(65): Show |
a0001a0002a0003others(10): Show | a0001c0001a0001c0005a0002c0011others(32): Show | a0001c0001t0011a0001c0005t0002a0002c0011t0004others(54): Show | a0001c0001t0011g0085a0001c0005t0002g0254a0002c0011t0004g0213others(65): Show | 68 | 318 | 0.2138 | 4 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 34/49 | c.4699-536_4699-533dupTTTT | ||||||
|
chr9:104801312
|
C | T | intron_variant | MODIFIER | HG00408.hp2 HG00558.hp1 HG00609.hp1 others(38): Show |
a0002a0003a0004others(6): Show | a0002c0011a0002c0037a0003c0009others(16): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(30): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(38): Show | 41 | 318 | 0.1289 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 34/49 | c.4699-728G>A | ||||||
|
chr9:104801322
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(297): Show |
a0001a0002a0003others(34): Show | a0001c0001a0001c0005a0001c0035others(105): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(196): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(297): Show | 300 | 318 | 0.9434 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 34/49 | c.4698+732A>G | ||||||
|
chr9:104801599
|
C | T | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(36): Show |
a0002a0004a0005others(4): Show | a0002c0011a0002c0037a0004c0008others(14): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(28): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(36): Show | 39 | 318 | 0.1226 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 34/49 | c.4698+455G>A | ||||||
|
chr9:104801733
|
G | A | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(36): Show |
a0002a0004a0005others(4): Show | a0002c0011a0002c0037a0004c0008others(14): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(28): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(36): Show | 39 | 318 | 0.1226 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 34/49 | c.4698+321C>T | ||||||
|
chr9:104802185
|
C | G | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(36): Show |
a0002a0004a0005others(4): Show | a0002c0011a0002c0037a0004c0008others(14): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(28): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(36): Show | 39 | 318 | 0.1226 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 33/49 | c.4593-26G>C | ||||||
|
chr9:104802460
|
T | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(304): Show |
a0001a0002a0003others(35): Show | a0001c0001a0001c0005a0001c0035others(111): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(203): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(304): Show | 307 | 318 | 0.9654 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 33/49 | c.4593-301A>C | ||||||
|
chr9:104802658
|
G | A | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(37): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(15): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(29): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(37): Show | 40 | 318 | 0.1258 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 33/49 | c.4593-499C>T | ||||||
|
chr9:104803638
|
G | A | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(36): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(15): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(29): Show | a0002c0011t0004g0263a0002c0011t0020g0171a0002c0037t0011g0116others(36): Show | 39 | 318 | 0.1226 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 32/49 | c.4560-322C>T | ||||||
|
chr9:104803712
|
A | G | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(36): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(15): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(29): Show | a0002c0011t0004g0263a0002c0011t0020g0171a0002c0037t0011g0116others(36): Show | 39 | 318 | 0.1226 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 32/49 | c.4560-396T>C | ||||||
|
chr9:104804234
|
C | CA | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(37): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(15): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(29): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(37): Show | 40 | 318 | 0.1258 | 1 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 32/49 | c.4559+391dupT | ||||||
|
chr9:104804596
|
C | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(268): Show |
a0001a0002a0003others(25): Show | a0001c0001a0001c0005a0001c0035others(87): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(175): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(268): Show | 271 | 318 | 0.8522 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 32/49 | c.4559+30G>T | ||||||
|
chr9:104807845
|
T | TATAC | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(24): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(7): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(19): Show | a0002c0011t0004g0263a0002c0011t0020g0171a0002c0037t0011g0116others(24): Show | 27 | 318 | 0.0849 | 4 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 30/49 | c.4275-1416_4275-1415insGTAT | ||||||
|
chr9:104807884
|
A | T | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(284): Show |
a0001a0002a0003others(29): Show | a0001c0001a0001c0005a0001c0035others(100): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(189): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(284): Show | 287 | 318 | 0.9025 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 30/49 | c.4275-1454T>A | ||||||
|
chr9:104807885
|
T | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(284): Show |
a0001a0002a0003others(29): Show | a0001c0001a0001c0005a0001c0035others(100): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(189): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(284): Show | 287 | 318 | 0.9025 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 30/49 | c.4275-1455A>T | ||||||
|
chr9:104807914
|
ATTG | A | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(79): Show |
a0002a0004a0005others(10): Show | a0002c0011a0002c0025a0002c0031others(30): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(61): Show | a0002c0011t0004g0112a0002c0011t0004g0263a0002c0011t0007g0119others(79): Show | 82 | 318 | 0.2579 | -3 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 30/49 | c.4275-1487_4275-1485delCAA | ||||||
|
chr9:104808433
|
C | G | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(126): Show |
a0001a0002a0004others(21): Show | a0001c0001a0002c0011a0002c0025others(56): Show | a0001c0001t0001a0001c0001t0039a0002c0011t0004others(100): Show | a0001c0001t0001g0088a0001c0001t0039g0246a0002c0011t0004g0112others(126): Show | 129 | 318 | 0.4057 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 30/49 | c.4274+1033G>C | ||||||
|
chr9:104808927
|
G | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(304): Show |
a0001a0002a0003others(35): Show | a0001c0001a0001c0005a0001c0035others(111): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(203): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(304): Show | 307 | 318 | 0.9654 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 30/49 | c.4274+539C>T | ||||||
|
chr9:104810141
|
C | CAT | intron_variant | MODIFIER | HG00609.hp1 HG00673.hp1 HG01070.hp2 others(34): Show |
a0001a0002a0003others(12): Show | a0001c0001a0001c0005a0001c0035others(18): Show | a0001c0001t0002a0001c0001t0003a0001c0001t0004others(25): Show | a0001c0001t0002g0074a0001c0001t0003g0086a0001c0001t0004g0193others(34): Show | 37 | 318 | 0.1164 | 2 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 29/49 | c.4176-579_4176-578dupAT | ||||||
|
chr9:104811907
|
C | T | intron_variant | MODIFIER | HG00609.hp1 | a0012 | a0012c0040 | a0012c0040t0040 | a0012c0040t0040g0055 | 1 | 318 | 0.0031 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 28/49 | c.4050+667G>A | ||||||
|
chr9:104813965
|
G | A | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00609.hp1 others(101): Show |
a0001a0002a0004others(12): Show | a0001c0001a0002c0011a0002c0025others(42): Show | a0001c0001t0001a0001c0001t0039a0002c0011t0004others(82): Show | a0001c0001t0001g0088a0001c0001t0039g0246a0002c0011t0004g0112others(101): Show | 104 | 318 | 0.3270 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 27/49 | c.3901+153C>T | ||||||
|
chr9:104815822
|
A | C | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00621.hp2 others(30): Show |
a0002a0004a0005others(5): Show | a0002c0011a0002c0037a0004c0008others(9): Show | a0002c0011t0004a0002c0011t0020a0002c0037t0011others(22): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0020g0171others(30): Show | 33 | 318 | 0.1038 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 25/49 | c.3738+321T>G | ||||||
|
chr9:104817191
|
A | C | intron_variant | MODIFIER | HG00408.hp2 HG00609.hp1 HG00673.hp2 others(22): Show |
a0001a0002a0003others(5): Show | a0001c0001a0002c0011a0002c0037others(8): Show | a0001c0001t0001a0002c0011t0004a0002c0037t0011others(18): Show | a0001c0001t0001g0176a0002c0011t0004g0263a0002c0037t0011g0116others(22): Show | 25 | 318 | 0.0786 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 24/49 | c.3535+141T>G | ||||||
|
chr9:104818376
|
G | A | intron_variant | MODIFIER | HG00408.hp2 HG00544.hp1 HG00609.hp1 others(40): Show |
a0001a0002a0003others(9): Show | a0001c0001a0002c0011a0002c0037others(13): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0006others(33): Show | a0001c0001t0001g0088a0001c0001t0001g0176a0001c0001t0003g0297others(40): Show | 43 | 318 | 0.1352 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 23/49 | c.3462+287C>T | ||||||
|
chr9:104818561
|
T | C | intron_variant | MODIFIER | HG00408.hp2 HG00544.hp1 HG00609.hp1 others(41): Show |
a0001a0002a0003others(9): Show | a0001c0001a0002c0011a0002c0037others(14): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0006others(34): Show | a0001c0001t0001g0088a0001c0001t0001g0176a0001c0001t0003g0297others(41): Show | 44 | 318 | 0.1384 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 23/49 | c.3462+102A>G | ||||||
|
chr9:104820499
|
G | A | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(40): Show |
a0002a0003a0012others(1): Show | a0002c0011a0002c0031a0002c0037others(11): Show | a0002c0011t0007a0002c0011t0012a0002c0011t0020others(24): Show | a0002c0011t0007g0119a0002c0011t0007g0247a0002c0011t0012g0134others(40): Show | 43 | 318 | 0.1352 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 20/49 | c.2961-430C>T | ||||||
|
chr9:104821750
|
C | T | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(314): Show |
a0001a0002a0003others(35): Show | a0001c0001a0001c0005a0001c0035others(111): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(210): Show | a0001c0001t0001g0016a0001c0001t0001g0026a0001c0001t0001g0077others(314): Show | 317 | 318 | 0.9969 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 19/49 | c.2829-244G>A | ||||||
|
chr9:104822028
|
T | C | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(35): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0002c0059others(5): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(19): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(35): Show | 38 | 318 | 0.1195 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 19/49 | c.2828+468A>G | ||||||
|
chr9:104823035
|
T | G | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(73): Show |
a0002a0003a0011others(7): Show | a0002c0011a0002c0015a0002c0017others(30): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(49): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(73): Show | 76 | 318 | 0.2390 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 18/49 | c.2657-368A>C | ||||||
|
chr9:104823560
|
G | A | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(35): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0002c0059others(5): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(19): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(35): Show | 38 | 318 | 0.1195 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 18/49 | c.2657-893C>T | ||||||
|
chr9:104824239
|
CAAAG | C | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(35): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0002c0059others(5): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(19): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(35): Show | 38 | 318 | 0.1195 | -4 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 18/49 | c.2656+222_2656+225delCTTT | ||||||
|
chr9:104826291
|
A | G | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(136): Show |
a0002a0003a0006others(12): Show | a0002c0011a0002c0015a0002c0017others(44): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(93): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(136): Show | 139 | 318 | 0.4371 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 16/49 | c.2338-404T>C | ||||||
|
chr9:104826496
|
C | T | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(136): Show |
a0002a0003a0006others(12): Show | a0002c0011a0002c0015a0002c0017others(44): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(93): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(136): Show | 139 | 318 | 0.4371 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 16/49 | c.2337+452G>A | ||||||
|
chr9:104826853
|
A | T | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(188): Show |
a0002a0003a0004others(23): Show | a0002c0011a0002c0015a0002c0017others(71): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(135): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(188): Show | 191 | 318 | 0.6006 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 16/49 | c.2337+95T>A | ||||||
|
chr9:104827299
|
A | T | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(135): Show |
a0002a0003a0006others(12): Show | a0002c0011a0002c0015a0002c0017others(43): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(92): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(135): Show | 138 | 318 | 0.4340 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2116-130T>A | ||||||
|
chr9:104827349
|
C | T | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(135): Show |
a0002a0003a0006others(12): Show | a0002c0011a0002c0015a0002c0017others(43): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(92): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(135): Show | 138 | 318 | 0.4340 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2116-180G>A | ||||||
|
chr9:104827463
|
C | T | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(187): Show |
a0002a0003a0004others(23): Show | a0002c0011a0002c0015a0002c0017others(70): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(134): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(187): Show | 190 | 318 | 0.5975 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2116-294G>A | ||||||
|
chr9:104827514
|
C | G | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(35): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0002c0059others(5): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(19): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(35): Show | 38 | 318 | 0.1195 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2116-345G>C | ||||||
|
chr9:104827666
|
G | C | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(34): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0003c0002others(4): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(18): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(34): Show | 37 | 318 | 0.1164 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2116-497C>G | ||||||
|
chr9:104828165
|
C | T | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(35): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0002c0059others(5): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(19): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(35): Show | 38 | 318 | 0.1195 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2115+751G>A | ||||||
|
chr9:104828801
|
G | T | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(37): Show |
a0002a0003a0012 | a0002c0011a0002c0032a0002c0037others(6): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(20): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(37): Show | 40 | 318 | 0.1258 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2115+115C>A | ||||||
|
chr9:104828835
|
T | C | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(37): Show |
a0002a0003a0012 | a0002c0011a0002c0032a0002c0037others(6): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(20): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(37): Show | 40 | 318 | 0.1258 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 15/49 | c.2115+81A>G | ||||||
|
chr9:104829526
|
C | T | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(35): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0002c0059others(5): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(19): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(35): Show | 38 | 318 | 0.1195 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 14/49 | c.1893-388G>A | ||||||
|
chr9:104829908
|
C | A | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(137): Show |
a0001a0002a0003others(13): Show | a0001c0092a0002c0011a0002c0015others(45): Show | a0001c0092t0012a0002c0011t0004a0002c0011t0007others(94): Show | a0001c0092t0012g0220a0002c0011t0004g0112a0002c0011t0004g0213others(137): Show | 140 | 318 | 0.4403 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 14/49 | c.1893-770G>T | ||||||
|
chr9:104829943
|
TACACAC | T | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(58): Show |
a0002a0003a0012others(5): Show | a0002c0011a0002c0015a0002c0032others(22): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(40): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(58): Show | 61 | 318 | 0.1918 | -6 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 14/49 | c.1893-811_1893-806delGTGTGT | ||||||
|
chr9:104830689
|
CA | C | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(37): Show |
a0002a0003a0012 | a0002c0011a0002c0032a0002c0037others(6): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(20): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(37): Show | 40 | 318 | 0.1258 | -1 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 14/49 | c.1892+235delT | ||||||
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chr9:104830901
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A | T | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp1 HG00408.hp2 others(220): Show |
a0001a0002a0003others(29): Show | a0001c0092a0001c0108a0001c0109others(89): Show | a0001c0092t0012a0001c0108t0002a0001c0109t0001others(160): Show | a0001c0092t0012g0220a0001c0108t0002g0113a0001c0109t0001g0232others(220): Show | 223 | 318 | 0.7013 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 14/49 | c.1892+24T>A | ||||||
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chr9:104831149
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T | TAA | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00609.hp1 others(80): Show |
a0001a0002a0003others(10): Show | a0001c0092a0002c0011a0002c0015others(30): Show | a0001c0092t0012a0002c0011t0007a0002c0011t0012others(60): Show | a0001c0092t0012g0220a0002c0011t0007g0119a0002c0011t0007g0247others(80): Show | 83 | 318 | 0.2610 | 2 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 13/49 | c.1716-50_1716-49dupTT | ||||||
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chr9:104832193
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T | C | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(34): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0003c0002others(4): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(18): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(34): Show | 37 | 318 | 0.1164 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 12/49 | c.1510-366A>G | ||||||
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chr9:104832234
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A | G | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(121): Show |
a0001a0002a0003others(14): Show | a0001c0092a0002c0011a0002c0015others(38): Show | a0001c0092t0012a0002c0011t0004a0002c0011t0007others(85): Show | a0001c0092t0012g0220a0002c0011t0004g0112a0002c0011t0004g0213others(121): Show | 124 | 318 | 0.3899 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 12/49 | c.1509+340T>C | ||||||
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chr9:104833321
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A | C | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(118): Show |
a0001a0002a0003others(13): Show | a0001c0092a0002c0011a0002c0015others(37): Show | a0001c0092t0012a0002c0011t0004a0002c0011t0007others(83): Show | a0001c0092t0012g0220a0002c0011t0004g0112a0002c0011t0004g0213others(118): Show | 121 | 318 | 0.3805 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1312-550T>G | ||||||
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chr9:104833403
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A | G | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(35): Show |
a0002a0003a0012 | a0002c0011a0002c0037a0002c0059others(5): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(19): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(35): Show | 38 | 318 | 0.1195 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1312-632T>C | ||||||
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chr9:104833697
|
C | A | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(123): Show |
a0001a0002a0003others(15): Show | a0001c0092a0002c0011a0002c0015others(41): Show | a0001c0092t0012a0002c0011t0004a0002c0011t0007others(88): Show | a0001c0092t0012g0220a0002c0011t0004g0112a0002c0011t0004g0213others(123): Show | 126 | 318 | 0.3962 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1312-926G>T | ||||||
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chr9:104833906
|
CTGCACAG others(909): Show |
C | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(40): Show |
a0002a0003a0012others(1): Show | a0002c0011a0002c0015a0002c0037others(8): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(23): Show | a0002c0011t0004g0112a0002c0011t0004g0213a0002c0011t0004g0263others(40): Show | 43 | 318 | 0.1352 | -916 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1312-2051_1312-1136del | ||||||
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chr9:104835105
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G | A | intron_variant | MODIFIER | HG00609.hp1 | a0012 | a0012c0040 | a0012c0040t0040 | a0012c0040t0040g0055 | 1 | 318 | 0.0031 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1311+1875C>T | ||||||
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chr9:104835246
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CA | C | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(114): Show |
a0001a0002a0003others(11): Show | a0001c0092a0002c0011a0002c0015others(36): Show | a0001c0092t0012a0002c0011t0004a0002c0011t0007others(78): Show | a0001c0092t0012g0220a0002c0011t0004g0112a0002c0011t0004g0213others(114): Show | 117 | 318 | 0.3679 | -1 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1311+1733delT | ||||||
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chr9:104835441
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A | G | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp1 HG00408.hp2 others(229): Show |
a0001a0002a0003others(30): Show | a0001c0092a0001c0108a0001c0109others(94): Show | a0001c0092t0012a0001c0108t0002a0001c0109t0001others(166): Show | a0001c0092t0012g0220a0001c0108t0002g0113a0001c0109t0001g0232others(229): Show | 232 | 318 | 0.7296 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1311+1539T>C | ||||||
|
chr9:104836459
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C | T | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00408.hp1 others(277): Show |
a0001a0002a0003others(34): Show | a0001c0001a0001c0005a0001c0035others(106): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(197): Show | a0001c0001t0001g0088a0001c0001t0001g0102a0001c0001t0001g0203others(277): Show | 280 | 318 | 0.8805 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1311+521G>A | ||||||
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chr9:104836603
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T | G | intron_variant | MODIFIER | HG00099.hp2 HG00423.hp2 HG00558.hp1 others(39): Show |
a0002a0003a0012others(1): Show | a0002c0011a0002c0015a0002c0037others(7): Show | a0002c0011t0004a0002c0011t0007a0002c0011t0012others(22): Show | a0002c0011t0004g0213a0002c0011t0004g0263a0002c0011t0007g0119others(39): Show | 42 | 318 | 0.1321 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 11/49 | c.1311+377A>C | ||||||
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chr9:104837157
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G | GC | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp1 HG00408.hp2 others(219): Show |
a0001a0002a0003others(30): Show | a0001c0092a0001c0108a0001c0109others(89): Show | a0001c0092t0012a0001c0108t0002a0001c0109t0001others(160): Show | a0001c0092t0012g0220a0001c0108t0002g0113a0001c0109t0001g0232others(219): Show | 222 | 318 | 0.6981 | 1 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 10/49 | c.1195-62_1195-61insG | ||||||
|
chr9:104837200
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T | C | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp2 HG00423.hp2 others(128): Show |
a0001a0002a0003others(16): Show | a0001c0092a0002c0011a0002c0015others(43): Show | a0001c0092t0012a0002c0011t0004a0002c0011t0007others(89): Show | a0001c0092t0012g0220a0002c0011t0004g0112a0002c0011t0004g0213others(128): Show | 131 | 318 | 0.4120 | 0 | ABCA1 | ENSG00000165029.17 | transcript | ENST00000374736.8 | protein_coding | 10/49 | c.1195-104A>G | ||||||
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chr9:104837887
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A | G | intron_variant | MODIFIER | HG00099.hp2 HG00408.hp1 HG00408.hp2 others(224): Show |
a0001a0002a0003others(30): Show | a0001c0092a0001c0108a0001c0109others(91): Show | a0001c0092t0012a0001c0108t0002a0001c0109t0001others(163): Show | a0001c0092t0012g0220a0001c0108t0002g0113a0001c0109t0001g0232others(224): Show |