| geneid | 10349 |
|---|---|
| ensemblid | ENSG00000154263.18 |
| hgncid | 30 |
| symbol | ABCA10 |
| name | ATP binding cassette subfamily A member 10 |
| refseq_nuc | NM_001377321.1 |
| refseq_prot | NP_001364250.1 |
| ensembl_nuc | ENST00000690296.1 |
| ensembl_prot | ENSP00000509702.1 |
| mane_status | MANE Select |
| chr | chr17 |
| start | 69148007 |
| end | 69228824 |
| strand | - |
| ver | v1.2 |
| region | chr17:69148007-69228824 |
| region5000 | chr17:69143007-69233824 |
| regionname0 | ABCA10_chr17_69148007_69228824 |
| regionname5000 | ABCA10_chr17_69143007_69233824 |
| chr:pos | ref | alt | af | annotation | impact | samples | AHAPIDS | ACHAPIDS | ACTHAPIDS | ACTGHAPIDS | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr17:69228706
|
G | T | 0.9368 | 5_prime_UTR_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp2 others(323): Show |
a0001a0002a0003others(22): Show | a0001c0001a0001c0034a0001c0035others(33): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0013others(42): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(317): Show | 326 | 348 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 1/39 | c.-438C>A | 3348 |
| chr:pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr17:69149390
|
A | G | intron_variant | MODIFIER | HG03041.hp1 NA18522.hp1 |
a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0180a0001c0001t0002g0181 | 2 | 348 | 0.0058 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 37/38 | c.4478-302T>C | ||||||
|
chr17:69151126
|
C | T | intron_variant | MODIFIER | HG03041.hp1 NA18522.hp1 |
a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0180a0001c0001t0002g0181 | 2 | 348 | 0.0058 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 36/38 | c.4397+917G>A | ||||||
|
chr17:69152802
|
GTAAA | G | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp2 HG00280.hp1 others(203): Show |
a0001a0002a0003others(13): Show | a0001c0001a0002c0002a0002c0015others(17): Show | a0001c0001t0002a0002c0002t0001a0002c0002t0005others(23): Show | a0001c0001t0002g0012a0001c0001t0002g0159a0001c0001t0002g0179others(199): Show | 206 | 348 | 0.5920 | -4 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 34/38 | c.4137-325_4137-322delTTTA | ||||||
|
chr17:69153725
|
C | T | intron_variant | MODIFIER | HG03041.hp1 NA18522.hp1 |
a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0180a0001c0001t0002g0181 | 2 | 348 | 0.0058 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 32/38 | c.3965+106G>A | ||||||
|
chr17:69154035
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp2 others(339): Show |
a0001a0002a0003others(23): Show | a0001c0001a0001c0034a0001c0035others(34): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(48): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(333): Show | 342 | 348 | 0.9828 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 31/38 | c.3787-26A>G | ||||||
|
chr17:69162976
|
T | C | intron_variant | MODIFIER | HG03041.hp1 NA18522.hp1 |
a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0180a0001c0001t0002g0181 | 2 | 348 | 0.0058 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 27/38 | c.3363+1098A>G | ||||||
|
chr17:69168493
|
C | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp2 others(339): Show |
a0001a0002a0003others(23): Show | a0001c0001a0001c0034a0001c0035others(34): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(48): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(333): Show | 342 | 348 | 0.9828 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 25/38 | c.3163-3410G>C | ||||||
|
chr17:69171934
|
C | CA | intron_variant | MODIFIER | HG00099.hp1 HG00140.hp1 HG00280.hp2 others(146): Show |
a0001a0003a0004others(11): Show | a0001c0001a0001c0034a0001c0035others(17): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(23): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(144): Show | 149 | 348 | 0.4282 | 1 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 25/38 | c.3162+2346dupT | ||||||
|
chr17:69175396
|
T | G | intron_variant | MODIFIER | HG03041.hp1 NA18522.hp1 |
a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0180a0001c0001t0002g0181 | 2 | 348 | 0.0058 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 23/38 | c.2877+10A>C | ||||||
|
chr17:69176932
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(344): Show |
a0001a0002a0003others(23): Show | a0001c0001a0001c0034a0001c0035others(34): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(48): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(338): Show | 347 | 348 | 0.9971 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 22/38 | c.2770-1419A>G | ||||||
|
chr17:69184871
|
GTA | G | intron_variant | MODIFIER | HG01346.hp2 HG03041.hp1 NA18522.hp1 |
a0001a0019 | a0001c0001a0019c0037 | a0001c0001t0002a0019c0037t0007 | a0001c0001t0002g0180a0001c0001t0002g0181a0019c0037t0007g0331 | 3 | 348 | 0.0086 | -2 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 20/38 | c.2497+604_2497+605delTA | ||||||
|
chr17:69188880
|
T | G | intron_variant | MODIFIER | HG03041.hp1 | a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0180 | 1 | 348 | 0.0029 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 18/38 | c.2132-1001A>C | ||||||
|
chr17:69192527
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(344): Show |
a0001a0002a0003others(23): Show | a0001c0001a0001c0034a0001c0035others(34): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(48): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(338): Show | 347 | 348 | 0.9971 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 16/38 | c.1871+36A>G | ||||||
|
chr17:69195554
|
C | CT | intron_variant | MODIFIER | HG00099.hp1 HG00140.hp1 HG00280.hp2 others(92): Show |
a0001a0004a0009others(5): Show | a0001c0001a0001c0034a0001c0035others(7): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(12): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(91): Show | 95 | 348 | 0.2730 | 1 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 11/38 | c.1235-1060dupA | ||||||
|
chr17:69210081
|
T | TTTATTAT others(2): Show |
intron_variant | MODIFIER | HG00639.hp2 HG01074.hp2 HG01243.hp2 others(19): Show |
a0001a0004a0009others(1): Show | a0001c0001a0004c0004a0009c0018others(1): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(5): Show | a0001c0001t0002g0040a0001c0001t0002g0066a0001c0001t0002g0079others(19): Show | 22 | 348 | 0.0632 | 9 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 9/38 | c.1006+4614_1006+4622dupTAATAATAA | ||||||
|
chr17:69211314
|
GATATAT | G | intron_variant | MODIFIER | HG01346.hp2 HG02015.hp2 HG02055.hp2 others(17): Show |
a0001a0004a0008others(2): Show | a0001c0001a0004c0004a0004c0006others(3): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0018others(5): Show | a0001c0001t0002g0012a0001c0001t0002g0164a0001c0001t0002g0165others(16): Show | 20 | 348 | 0.0575 | -6 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 9/38 | c.1006+3384_1006+3389delATATAT | ||||||
|
chr17:69223319
|
A | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(326): Show |
a0001a0002a0003others(22): Show | a0001c0001a0001c0034a0001c0035others(33): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(45): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(320): Show | 329 | 348 | 0.9454 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 3/38 | c.35-622T>C | ||||||
|
chr17:69223469
|
T | A | intron_variant | MODIFIER | HG00140.hp1 HG00733.hp2 HG00738.hp2 others(36): Show |
a0001a0002a0003others(3): Show | a0001c0001a0002c0002a0003c0003others(4): Show | a0001c0001t0002a0001c0001t0008a0002c0002t0001others(8): Show | a0001c0001t0002g0147a0001c0001t0002g0178a0001c0001t0002g0179others(36): Show | 39 | 348 | 0.1121 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 3/38 | c.35-772A>T | ||||||
|
chr17:69225173
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(344): Show |
a0001a0002a0003others(23): Show | a0001c0001a0001c0034a0001c0035others(34): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008others(48): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026others(338): Show | 347 | 348 | 0.9971 | 0 | ABCA10 | ENSG00000154263.18 | transcript | ENST00000690296.1 | protein_coding | 3/38 | c.34+152A>G |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
ahapid | alen | total | AFR | AMR | EAS | EUR | SAS | aseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABCA10 | 1/0 | a0001 | 1543 | 96 | 17 | 11 | 54 | 3 | 10 | subcellular location copy fasta | chr17 | 69143007 | 69233824 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
chapid | clen | total | AFR | AMR | EAS | EUR | SAS | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABCA10 | 1/0 | c0001 | 4632 | 94 | 17 | 11 | 53 | 3 | 9 | copy fasta | chr17 | 69143007 | 69233824 |
| genename | grch38/chm13v2 | thapid | tlen | total | AFR | AMR | EAS | EUR | SAS | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABCA10 | 0/0 | t0002 | 1377 | 92 | 10 | 11 | 60 | 2 | 9 | copy fasta | chr17 | 69143007 | 69233824 |
| genename | grch38/chm13v2 | ghapid | total | AFR | AMR | EAS | EUR | SAS | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ABCA10 | 0/0 | g0180 | 1 | 1 | 0 | 0 | 0 | 0 | chr17 | 69143007 | 69233824 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
achapid | total | AFR | AMR | EAS | EUR | SAS | clen | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABCA10 | 1/0 | a0001c0001 | 94 | 17 | 11 | 53 | 3 | 9 | 4632 | copy fasta | chr17 | 69143007 | 69233824 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
acthapid | total | AFR | AMR | EAS | EUR | SAS | tlen | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABCA10 | 0/0 | a0001c0001t0002 | 81 | 9 | 11 | 51 | 2 | 8 | 6008 | copy fasta | chr17 | 69143007 | 69233824 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
actghapid | total | AFR | AMR | EAS | EUR | SAS | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ABCA10 | 0/0 | a0001c0001t0002g0180 | 1 | 1 | 0 | 0 | 0 | 0 | chr17 | 69143007 | 69233824 |
Click to load Haplotype QTL data...
| pos | S. Strand |
E# Exon Number |
max | median | min | diff | type | haplotypeid | max_hap_list | min_hap_list | symbol | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69228581 | - | 1 | -0.7640 | -0.7640 | -0.7640 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69227145 | - | 2 | -0.9634 | -0.9634 | -0.9634 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69227285 | - | 2 | 0.9852 | 0.9852 | 0.9852 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69225325 | - | 3 | -0.9047 | -0.9046 | -0.9047 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69225529 | - | 3 | 0.5510 | 0.5510 | 0.5510 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69222533 | - | 4 | -0.9954 | -0.9953 | -0.9954 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69222697 | - | 4 | 0.9896 | 0.9896 | 0.9896 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69221792 | - | 5 | -0.2255 | -0.2255 | -0.2255 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69221895 | - | 5 | 0.2382 | 0.2382 | 0.2382 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69219545 | - | 6 | -0.9390 | -0.9390 | -0.9390 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69219771 | - | 6 | 0.7220 | 0.7220 | 0.7220 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69216217 | - | 7 | -0.2583 | -0.2583 | -0.2583 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69216358 | - | 7 | 0.3841 | 0.3841 | 0.3841 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69215815 | - | 8 | -0.6954 | -0.6954 | -0.6954 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69216000 | - | 8 | 0.7623 | 0.7623 | 0.7623 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69214704 | - | 9 | -0.6798 | -0.6798 | -0.6798 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69214851 | - | 9 | 0.5917 | 0.5917 | 0.5917 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69201500 | - | 10 | -0.8167 | -0.8167 | -0.8167 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69201668 | - | 10 | 0.5810 | 0.5810 | 0.5810 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69197064 | - | 11 | -0.9800 | -0.9800 | -0.9800 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69197122 | - | 11 | 0.9943 | 0.9943 | 0.9943 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69194385 | - | 12 | -0.9892 | -0.9892 | -0.9892 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69194495 | - | 12 | 0.9966 | 0.9966 | 0.9966 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69193814 | - | 13 | -0.8127 | -0.8127 | -0.8127 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69193989 | - | 13 | 0.8838 | 0.8838 | 0.8838 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69193493 | - | 14 | -0.9499 | -0.9499 | -0.9499 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69193612 | - | 14 | 0.9862 | 0.9862 | 0.9862 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69193110 | - | 15 | -0.9704 | -0.9704 | -0.9704 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69193248 | - | 15 | 0.9922 | 0.9922 | 0.9922 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69192563 | - | 16 | -0.9272 | -0.9272 | -0.9272 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69192653 | - | 16 | 0.9607 | 0.9607 | 0.9607 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69191176 | - | 17 | -0.9439 | -0.9439 | -0.9439 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69191315 | - | 17 | 0.9736 | 0.9736 | 0.9736 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69190358 | - | 18 | -0.9946 | -0.9946 | -0.9946 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69190477 | - | 18 | 0.9880 | 0.9880 | 0.9880 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69187681 | - | 19 | -0.9744 | -0.9744 | -0.9744 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69187879 | - | 19 | 0.9886 | 0.9886 | 0.9886 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69185477 | - | 20 | -0.9113 | -0.9113 | -0.9113 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69185643 | - | 20 | 0.7807 | 0.7807 | 0.7807 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69182675 | - | 21 | -0.9993 | -0.9993 | -0.9993 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69182808 | - | 21 | 0.9961 | 0.9961 | 0.9961 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69182153 | - | 22 | -0.9050 | -0.9050 | -0.9050 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69182290 | - | 22 | 0.9818 | 0.9818 | 0.9818 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69175406 | - | 23 | -0.8262 | -0.8262 | -0.8262 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69175513 | - | 23 | 0.8493 | 0.8492 | 0.8493 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69174607 | - | 24 | -0.4334 | -0.4334 | -0.4334 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69174777 | - | 24 | 0.4448 | 0.4448 | 0.4448 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69174281 | - | 25 | -0.5904 | -0.5904 | -0.5904 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69174394 | - | 25 | 0.5201 | 0.5201 | 0.5201 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69164964 | - | 26 | -0.3223 | -0.3223 | -0.3223 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69165083 | - | 26 | 0.2740 | 0.2740 | 0.2740 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69164074 | - | 27 | -0.3902 | -0.3902 | -0.3902 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69164154 | - | 27 | 0.4688 | 0.4688 | 0.4688 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69156832 | - | 28 | -0.7747 | -0.7747 | -0.7747 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69156923 | - | 28 | 0.8676 | 0.8676 | 0.8676 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69155805 | - | 29 | -0.9980 | -0.9980 | -0.9980 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69155925 | - | 29 | 0.9991 | 0.9991 | 0.9991 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69155019 | - | 30 | -0.9968 | -0.9968 | -0.9968 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69155136 | - | 30 | 0.9969 | 0.9969 | 0.9969 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69154235 | - | 31 | -0.9355 | -0.9355 | -0.9355 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69154326 | - | 31 | 0.9299 | 0.9299 | 0.9299 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69153831 | - | 32 | -0.9895 | -0.9895 | -0.9895 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69154009 | - | 32 | 0.9740 | 0.9740 | 0.9740 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69153471 | - | 33 | -0.8052 | -0.8052 | -0.8052 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69153546 | - | 33 | 0.9893 | 0.9893 | 0.9893 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69153305 | - | 34 | -0.9984 | -0.9984 | -0.9984 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69153399 | - | 34 | 0.9909 | 0.9909 | 0.9909 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69152362 | - | 35 | -0.9649 | -0.9649 | -0.9649 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69152481 | - | 35 | 0.9649 | 0.9649 | 0.9649 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69152043 | - | 36 | -0.7538 | -0.7538 | -0.7538 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69152183 | - | 36 | 0.8408 | 0.8408 | 0.8408 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69149984 | - | 37 | -0.9660 | -0.9660 | -0.9660 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69150063 | - | 37 | 0.9783 | 0.9783 | 0.9783 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69149033 | - | 38 | -0.9596 | -0.9596 | -0.9596 | 0.0000 | acceptor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69149088 | - | 38 | 0.9628 | 0.9628 | 0.9628 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| 69148925 | - | 39 | 0.6726 | 0.6726 | 0.6726 | 0.0000 | donor | a0001c0001t0002g0180 | HG03041.hp1 | HG03041.hp1 | ABCA10 | chr17 | 69143007 | 69233824 |
| pos | annotationhgvs_chgvs_p | clinvarid | clnsig | geneinfo | mc | clndisdb | strand strand
|
ahapid ahapid_count
|
chapid chapid count
|
thapid thapid_count
|
ghapid ghapid_count
|
AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
impact | chr | ref | alt | external |
|---|
| CHR:POS | annotationhgvs_chgvs_p | disease trait-log10podds or beta | AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
study | initial sample size/replication sample size | report genes | mapped gene | strongest snp risk allele | strand strand
|
impact | chr | ref | alt |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr17:69228706
|
c.-438C>A | Paclitaxel disposition in epithelial ovarian cancerothers(16): Show | a0001a0002a0003a0004a0005others(20): Show | a0001c0001a0001c0034a0001c0035a0002c0002a0002c0015others(31): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0013a0001c0001t0017a0001c0001t0018others(40): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026a0001c0001t0002g0027a0001c0001t0002g0028others(315): Show | HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00280.hp2 others(321): Show |
Genome-wide association study of paclitaxel and ca others(62): Show |
66 European ancestry cases, 14 Asian ancestry case others(2): Show |
ABCA10 | ABCA10 | rs9302891-? | - | MODIFIER | chr17 | G | T |
|
chr17:69154035
|
c.3787-26A>G | Hemoglobin concentration0.03001 | a0001a0002a0003a0004a0005others(21): Show | a0001c0001a0001c0034a0001c0035a0002c0002a0002c0015others(32): Show | a0001c0001t0002a0001c0001t0006a0001c0001t0008a0001c0001t0013a0001c0001t0017others(46): Show | a0001c0001t0002g0001a0001c0001t0002g0012a0001c0001t0002g0026a0001c0001t0002g0027a0001c0001t0002g0028others(331): Show | HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00280.hp2 others(337): Show |
Common and Ethnic-Specific Genetic Determinants of others(145): Show |
52,141 European ancestry females/89,584 European a others(15): Show |
ABCA10 | rs2886232-T | - | MODIFIER | chr17 | T | C |