| geneid | 262 |
|---|---|
| ensemblid | ENSG00000123505.19 |
| hgncid | 457 |
| symbol | AMD1 |
| name | adenosylmethionine decarboxylase 1 |
| refseq_nuc | NM_001634.6 |
| refseq_prot | NP_001625.2 |
| ensembl_nuc | ENST00000368885.8 |
| ensembl_prot | ENSP00000357880.3 |
| mane_status | MANE Select |
| chr | chr6 |
| start | 110874785 |
| end | 110895713 |
| strand | + |
| ver | v1.2 |
| region | chr6:110874785-110895713 |
| region5000 | chr6:110869785-110900713 |
| regionname0 | AMD1_chr6_110874785_110895713 |
| regionname5000 | AMD1_chr6_110869785_110900713 |
| chr:pos | ref | alt | af | annotation | impact | samples | AHAPIDS | ACHAPIDS | ACTHAPIDS | ACTGHAPIDS | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr6:110874975
|
CA | C | 0.0355 | 5_prime_UTR_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(11): Show |
a0001 | a0001c0001 | a0001c0001t0005a0001c0001t0009a0001c0001t0015 | a0001c0001t0005g0012a0001c0001t0005g0028a0001c0001t0005g0123others(5): Show | 14 | 394 | -1 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/9 | c.-120delA | 120 | INFO_REALIGN_3_PRIME | ||||
|
chr6:110893863
|
G | A | 0.0051 | 3_prime_UTR_variant | MODIFIER | HG00621.hp2 NA18998.hp1 |
a0001 | a0001c0001 | a0001c0001t0009 | a0001c0001t0009g0012 | 2 | 394 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 9/9 | c.*247G>A | 247 | |||||
|
chr6:110895450
|
TTTTTG | T | 0.5102 | 3_prime_UTR_variant | MODIFIER | HG00140.hp2 HG00280.hp1 HG00408.hp1 others(198): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0002a0001c0001t0003a0001c0001t0004others(9): Show | a0001c0001t0002g0001a0001c0001t0002g0006a0001c0001t0002g0007others(61): Show | 201 | 394 | -5 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 9/9 | c.*1858_*1862delTGTTT | 1858 | INFO_REALIGN_3_PRIME |
| chr:pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr6:110875666
|
G | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(386): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(14): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(132): Show | 389 | 394 | 0.9873 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+451G>C | ||||||
|
chr6:110876263
|
A | G | intron_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(16): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0005a0001c0001t0008others(2): Show | a0001c0001t0004g0030a0001c0001t0004g0047a0001c0001t0005g0012others(8): Show | 19 | 394 | 0.0482 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+1048A>G | ||||||
|
chr6:110877829
|
A | G | intron_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(16): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0005a0001c0001t0008others(2): Show | a0001c0001t0004g0030a0001c0001t0004g0047a0001c0001t0005g0012others(8): Show | 19 | 394 | 0.0482 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+2614A>G | ||||||
|
chr6:110879025
|
G | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+3810G>A | ||||||
|
chr6:110879282
|
G | A | intron_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(16): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0005a0001c0001t0008others(2): Show | a0001c0001t0004g0030a0001c0001t0004g0047a0001c0001t0005g0012others(8): Show | 19 | 394 | 0.0482 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+4067G>A | ||||||
|
chr6:110880041
|
C | T | intron_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(16): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0005a0001c0001t0008others(2): Show | a0001c0001t0004g0030a0001c0001t0004g0047a0001c0001t0005g0012others(8): Show | 19 | 394 | 0.0482 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+4826C>T | ||||||
|
chr6:110880271
|
G | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+5056G>A | ||||||
|
chr6:110880580
|
C | A | intron_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(10): Show |
a0001 | a0001c0001 | a0001c0001t0005a0001c0001t0009 | a0001c0001t0005g0012a0001c0001t0005g0028a0001c0001t0005g0123others(4): Show | 13 | 394 | 0.0330 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.110+5365C>A | ||||||
|
chr6:110882216
|
A | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-5289A>G | ||||||
|
chr6:110883164
|
C | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(221): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0004a0001c0001t0005others(7): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(86): Show | 224 | 394 | 0.5685 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-4341C>G | ||||||
|
chr6:110883713
|
A | T | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-3792A>T | ||||||
|
chr6:110883748
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-3757T>C | ||||||
|
chr6:110884149
|
A | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(224): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0004a0001c0001t0005others(9): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(89): Show | 227 | 394 | 0.5761 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-3356A>G | ||||||
|
chr6:110884202
|
G | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-3303G>C | ||||||
|
chr6:110885380
|
T | C | intron_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(10): Show |
a0001 | a0001c0001 | a0001c0001t0005a0001c0001t0009 | a0001c0001t0005g0012a0001c0001t0005g0028a0001c0001t0005g0123others(4): Show | 13 | 394 | 0.0330 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-2125T>C | ||||||
|
chr6:110885418
|
T | TTTG | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(292): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(110): Show | 295 | 394 | 0.7487 | 3 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-2081_111-2079dupGTT | INFO_REALIGN_3_PRIME | |||||
|
chr6:110885983
|
G | A | intron_variant | MODIFIER | HG00621.hp2 HG01168.hp1 HG01192.hp1 others(10): Show |
a0001 | a0001c0001 | a0001c0001t0005a0001c0001t0009 | a0001c0001t0005g0012a0001c0001t0005g0028a0001c0001t0005g0123others(4): Show | 13 | 394 | 0.0330 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-1522G>A | ||||||
|
chr6:110886222
|
CAAA | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(283): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(10): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(101): Show | 286 | 394 | 0.7259 | -3 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-1268_111-1266delAAA | INFO_REALIGN_3_PRIME | |||||
|
chr6:110886741
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-764T>C | ||||||
|
chr6:110887352
|
G | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 1/8 | c.111-153G>A | ||||||
|
chr6:110889217
|
C | T | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(221): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0004a0001c0001t0005others(7): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(86): Show | 224 | 394 | 0.5685 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 3/8 | c.324+234C>T | ||||||
|
chr6:110889451
|
T | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(221): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0004a0001c0001t0005others(7): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(86): Show | 224 | 394 | 0.5685 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 3/8 | c.324+468T>C | ||||||
|
chr6:110889687
|
T | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(319): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(117): Show | 322 | 394 | 0.8173 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 3/8 | c.325-567T>A | ||||||
|
chr6:110891080
|
A | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 4/8 | c.427+724A>G | ||||||
|
chr6:110892014
|
A | G | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(293): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(12): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(111): Show | 296 | 394 | 0.7513 | 0 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 4/8 | c.428-147A>G | ||||||
|
chr6:110892724
|
T | TC | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp1 HG00099.hp2 HG00280.hp2 others(206): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0004a0001c0001t0005others(7): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(77): Show | 209 | 394 | 0.5305 | 1 | AMD1 | ENSG00000123505.19 | transcript | ENST00000368885.8 | protein_coding | 6/8 | c.616-3dupC | INFO_REALIGN_3_PRIME |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
ahapid | alen | total | AFR | AMR | EAS | EUR | SAS | aseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AMD1 | 1/1 | a0001 | 334 | 393 | 76 | 64 | 189 | 14 | 48 | subcellular location copy fasta | chr6 | 110869785 | 110900713 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
chapid | clen | total | AFR | AMR | EAS | EUR | SAS | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AMD1 | 1/1 | c0001 | 1005 | 393 | 76 | 64 | 189 | 14 | 48 | copy fasta | chr6 | 110869785 | 110900713 |
| genename | grch38/chm13v2 | thapid | tlen | total | AFR | AMR | EAS | EUR | SAS | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AMD1 | 0/0 | t0009 | 2413 | 2 | 0 | 0 | 2 | 0 | 0 | copy fasta | chr6 | 110869785 | 110900713 |
| genename | grch38/chm13v2 | ghapid | total | AFR | AMR | EAS | EUR | SAS | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|
| AMD1 | 0/0 | g0012 | 6 | 0 | 0 | 5 | 0 | 1 | chr6 | 110869785 | 110900713 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
achapid | total | AFR | AMR | EAS | EUR | SAS | clen | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AMD1 | 1/1 | a0001c0001 | 393 | 76 | 64 | 189 | 14 | 48 | 1005 | copy fasta | chr6 | 110869785 | 110900713 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
acthapid | total | AFR | AMR | EAS | EUR | SAS | tlen | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AMD1 | 0/0 | a0001c0001t0009 | 2 | 0 | 0 | 2 | 0 | 0 | 3417 | copy fasta | chr6 | 110869785 | 110900713 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
actghapid | total | AFR | AMR | EAS | EUR | SAS | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|
| AMD1 | 0/0 | a0001c0001t0009g0012 | 2 | 0 | 0 | 2 | 0 | 0 | chr6 | 110869785 | 110900713 |
Click to load Haplotype QTL data...
| pos | S. Strand |
E# Exon Number |
max | median | min | diff | type | haplotypeid | max_hap_list | min_hap_list | symbol | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110875215 | + | 1 | -0.7082 | -0.7082 | -0.7082 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110887505 | + | 2 | 0.9885 | 0.9885 | 0.9885 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110887591 | + | 2 | -0.9973 | -0.9973 | -0.9973 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110888857 | + | 3 | 0.9917 | 0.9917 | 0.9917 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110888983 | + | 3 | -0.9963 | -0.9962 | -0.9963 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110890254 | + | 4 | 0.9832 | 0.9832 | 0.9832 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110890356 | + | 4 | -0.9911 | -0.9911 | -0.9911 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110892161 | + | 5 | 0.9529 | 0.9529 | 0.9529 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110892203 | + | 5 | -0.9860 | -0.9860 | -0.9860 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110892299 | + | 6 | 0.9957 | 0.9957 | 0.9957 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110892443 | + | 6 | -0.9997 | -0.9997 | -0.9997 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110892735 | + | 7 | 0.9987 | 0.9987 | 0.9987 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110892827 | + | 7 | -0.9989 | -0.9989 | -0.9989 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110892910 | + | 8 | 0.9965 | 0.9965 | 0.9965 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110893065 | + | 8 | -0.9987 | -0.9987 | -0.9987 | 0.0000 | acceptor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| 110893476 | + | 9 | 0.9559 | 0.9559 | 0.9559 | 0.0000 | donor | a0001c0001t0009g0012 | HG00621.hp2 NA18998.hp1 |
HG00621.hp2 NA18998.hp1 |
AMD1 | chr6 | 110869785 | 110900713 |
| pos | annotationhgvs_chgvs_p | clinvarid | clnsig | geneinfo | mc | clndisdb | strand strand
|
ahapid ahapid_count
|
chapid chapid count
|
thapid thapid_count
|
ghapid ghapid_count
|
AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
impact | chr | ref | alt | external |
|---|
| CHR:POS | annotationhgvs_chgvs_p | disease trait-log10podds or beta | AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
study | initial sample size/replication sample size | report genes | mapped gene | strongest snp risk allele | strand strand
|
impact | chr | ref | alt |
|---|