| geneid | 2651 |
|---|---|
| ensemblid | ENSG00000111846.20 |
| hgncid | 4204 |
| symbol | GCNT2 |
| name | glucosaminyl (N-acetyl) transferase 2 (I blood group) |
| refseq_nuc | NM_145649.5 |
| refseq_prot | NP_663624.1 |
| ensembl_nuc | ENST00000495262.7 |
| ensembl_prot | ENSP00000419411.2 |
| mane_status | MANE Select |
| chr | chr6 |
| start | 10521351 |
| end | 10629368 |
| strand | + |
| ver | v1.2 |
| region | chr6:10521351-10629368 |
| region5000 | chr6:10516351-10634368 |
| regionname0 | GCNT2_chr6_10521351_10629368 |
| regionname5000 | GCNT2_chr6_10516351_10634368 |
| chr:pos | ref | alt | af | annotation | impact | samples | AHAPIDS | ACHAPIDS | ACTHAPIDS | ACTGHAPIDS | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|
| chr:pos | ref | alt | af | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | len | genename | geneid | featuretype | featureid | transcript_biotype | rank | hgvs_c | hgvs_p | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr6:10528781
|
A | G | 0.0648 | 5_prime_UTR_variant | MODIFIER | HG00642.hp2 HG01074.hp2 HG01175.hp2 others(18): Show |
a0001 | a0001c0001 | a0001c0001t0003a0001c0001t0007a0001c0001t0010others(4): Show | a0001c0001t0003g0229a0001c0001t0003g0230a0001c0001t0003g0231others(18): Show | 21 | 324 | 0 | GCNT2 | ENSG00000111846.20 | transcript | ENST00000495262.7 | protein_coding | 3/5 | c.-131A>G | 131 | |||||
|
chr6:10528854
|
T | C | 0.0556 | 5_prime_UTR_variant | MODIFIER | HG01074.hp2 HG01175.hp2 HG01192.hp1 others(15): Show |
a0001 | a0001c0001 | a0001c0001t0003a0001c0001t0010a0001c0001t0011others(3): Show | a0001c0001t0003g0229a0001c0001t0003g0230a0001c0001t0003g0231others(15): Show | 18 | 324 | 0 | GCNT2 | ENSG00000111846.20 | transcript | ENST00000495262.7 | protein_coding | 3/5 | c.-58T>C | 58 | |||||
|
chr6:10626660
|
C | G | 0.0062 | 3_prime_UTR_variant | MODIFIER | HG03579.hp1 NA20129.hp2 |
a0001 | a0001c0001 | a0001c0001t0021a0001c0001t0027 | a0001c0001t0021g0064a0001c0001t0027g0003 | 2 | 324 | 0 | GCNT2 | ENSG00000111846.20 | transcript | ENST00000495262.7 | protein_coding | 5/5 | c.*53C>G | 53 | |||||
|
chr6:10627278
|
C | T | 0.0309 | 3_prime_UTR_variant | MODIFIER | HG00735.hp2 HG01109.hp1 HG02258.hp1 others(7): Show |
a0001 | a0001c0001 | a0001c0001t0005a0001c0001t0008a0001c0001t0010others(3): Show | a0001c0001t0005g0026a0001c0001t0005g0040a0001c0001t0005g0213others(7): Show | 10 | 324 | 0 | GCNT2 | ENSG00000111846.20 | transcript | ENST00000495262.7 | protein_coding | 5/5 | c.*671C>T | 671 | |||||
|
chr6:10627628
|
C | CTTCA | 0.0556 | 3_prime_UTR_variant | MODIFIER | HG00735.hp2 HG01109.hp1 HG01891.hp1 others(15): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0005a0001c0001t0008others(5): Show | a0001c0001t0004g0020a0001c0001t0004g0035a0001c0001t0004g0069others(15): Show | 18 | 324 | 4 | GCNT2 | ENSG00000111846.20 | transcript | ENST00000495262.7 | protein_coding | 5/5 | c.*1022_*1025dupTTCA | 1026 | INFO_REALIGN_3_PRIME | ||||
|
chr6:10628340
|
T | G | 0.0278 | 3_prime_UTR_variant | MODIFIER | HG01891.hp1 HG02647.hp1 HG02738.hp1 others(6): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0021a0001c0001t0027 | a0001c0001t0004g0020a0001c0001t0004g0035a0001c0001t0004g0069others(6): Show | 9 | 324 | 0 | GCNT2 | ENSG00000111846.20 | transcript | ENST00000495262.7 | protein_coding | 5/5 | c.*1733T>G | 1733 | |||||
|
chr6:10629127
|
C | A | 0.0309 | 3_prime_UTR_variant | MODIFIER | HG00735.hp2 HG01109.hp1 HG02258.hp1 others(7): Show |
a0001 | a0001c0001 | a0001c0001t0005a0001c0001t0008a0001c0001t0010others(3): Show | a0001c0001t0005g0026a0001c0001t0005g0040a0001c0001t0005g0213others(7): Show | 10 | 324 | 0 | GCNT2 | ENSG00000111846.20 | transcript | ENST00000495262.7 | protein_coding | 5/5 | c.*2520C>A | 2520 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
ahapid | alen | total | AFR | AMR | EAS | EUR | SAS | aseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GCNT2 | 1/1 | a0001 | 402 | 323 | 86 | 59 | 132 | 8 | 36 | subcellular location copy fasta | chr6 | 10516351 | 10634368 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
chapid | clen | total | AFR | AMR | EAS | EUR | SAS | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GCNT2 | 1/1 | c0001 | 1209 | 321 | 86 | 59 | 130 | 8 | 36 | copy fasta | chr6 | 10516351 | 10634368 |
| genename | grch38/chm13v2 | thapid | tlen | total | AFR | AMR | EAS | EUR | SAS | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GCNT2 | 0/0 | t0027 | 3234 | 1 | 1 | 0 | 0 | 0 | 0 | copy fasta | chr6 | 10516351 | 10634368 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
achapid | total | AFR | AMR | EAS | EUR | SAS | clen | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GCNT2 | 1/1 | a0001c0001 | 321 | 86 | 59 | 130 | 8 | 36 | 1209 | copy fasta | chr6 | 10516351 | 10634368 |
| genename | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
acthapid | total | AFR | AMR | EAS | EUR | SAS | tlen | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GCNT2 | 0/0 | a0001c0001t0027 | 1 | 1 | 0 | 0 | 0 | 0 | 4442 | copy fasta | chr6 | 10516351 | 10634368 |
Click to load Haplotype QTL data...
| pos | S. Strand |
E# Exon Number |
max | median | min | diff | type | haplotypeid | max_hap_list | min_hap_list | symbol | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10521417 | + | 1 | 0.0000 | 0.0000 | 0.0000 | 0.0000 | acceptor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10557342 | + | 1 | -0.7631 | -0.7631 | -0.7631 | 0.0000 | acceptor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10527474 | + | 2 | 0.0671 | 0.0671 | 0.0671 | 0.0000 | donor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10527660 | + | 2 | -0.1210 | -0.1210 | -0.1210 | 0.0000 | acceptor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10621351 | + | 2 | 0.9834 | 0.9834 | 0.9834 | 0.0000 | donor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10621443 | + | 2 | -0.9934 | -0.9934 | -0.9934 | 0.0000 | acceptor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10528631 | + | 3 | 0.2739 | 0.2739 | 0.2739 | 0.0000 | donor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10529836 | + | 3 | -0.9397 | -0.9396 | -0.9397 | 0.0000 | acceptor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10626417 | + | 3 | 0.9356 | 0.9356 | 0.9356 | 0.0000 | donor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10621351 | + | 4 | 0.9834 | 0.9834 | 0.9834 | 0.0000 | donor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10621443 | + | 4 | -0.9934 | -0.9934 | -0.9934 | 0.0000 | acceptor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| 10626417 | + | 5 | 0.9356 | 0.9356 | 0.9356 | 0.0000 | donor | a0001c0001t0027 | NA20129.hp2 | NA20129.hp2 | GCNT2 | chr6 | 10516351 | 10634368 |
| CHR:POS | annotationhgvs_chgvs_p | disease trait-log10podds or beta | AHAPIDS ahapids
|
ACHAPIDS achapids
|
ACTHAPIDS acthapids
|
ACTGHAPIDS actghapids
|
haplotypeids haplotypeids
|
study | initial sample size/replication sample size | report genes | mapped gene | strongest snp risk allele | strand strand
|
impact | chr | ref | alt |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
chr6:10613224
|
c.926-8127C>T | Perceived intensity of glucose0.3 | a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0009a0001c0001t0010others(6): Show | a0001c0001t0001g0007a0001c0001t0001g0009a0001c0001t0001g0010a0001c0001t0001g0011a0001c0001t0001g0012others(76): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp2 HG00673.hp2 others(76): Show |
New insight into human sweet taste: a genome-wide others(67): Show |
1,757 European ancestry twins/ | GCNT2 | GCNT2 | rs7764197-T | + | MODIFIER | chr6 | C | T |
|
chr6:10518117
|
c.-3769G>A | White blood cell count | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(17): Show | a0001c0001t0001g0004a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023others(194): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(194): Show |
Leveraging Polygenic Functional Enrichment to Impr others(15): Show |
approximately 444,000 European ancestry individual others(2): Show |
GCNT2 | rs504117-? | + | MODIFIER | chr6 | G | A | |
|
chr6:10533759
|
c.925+3923C>T | Serum urate levels0.0276 | a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0003a0001c0001t0010a0001c0001t0011a0001c0001t0023others(2): Show | a0001c0001t0001g0025a0001c0001t0003g0229a0001c0001t0003g0230a0001c0001t0003g0231a0001c0001t0003g0232others(14): Show | HG01074.hp2 HG01175.hp2 HG01192.hp1 HG01433.hp2 HG02109.hp1 others(14): Show |
A genome-wide association analysis reveals new pat others(25): Show |
630,117 European ancestry individuals/ | GCNT2 | rs12386520-T | + | MODIFIER | chr6 | C | T | |
|
chr6:10559718
|
c.925+29882G>A |
Protein quantitative trait loci (liver)0 others(5): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0003a0001c0001t0004a0001c0001t0011a0001c0001t0025others(1): Show | a0001c0001t0001g0014a0001c0001t0001g0018a0001c0001t0001g0216a0001c0001t0003g0233a0001c0001t0003g0238others(4): Show | HG01496.hp1 HG02109.hp1 HG02622.hp1 HG03041.hp2 HG03540.hp2 others(4): Show |
Genome-wide pQTL analysis of protein expression re others(37): Show |
172 European ancestry individuals, 29 Black indivi others(22): Show |
NR | GCNT2 | rs538918175-A | + | MODIFIER | chr6 | G | A |
|
chr6:10526140
|
c.-468-1334T>A |
Monocyte percentage of white cells0.0219 others(4): Show |
a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0005a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013others(240): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(240): Show |
The Allelic Landscape of Human Blood Cell Trait Va others(44): Show |
170,494 European ancestry individuals/ | GCNT2 | GCNT2 | rs605783-A | + | MODIFIER | chr6 | T | A |
|
chr6:10526140
|
c.-468-1334T>A | Monocyte count0.03104518 | a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0005a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013others(240): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(240): Show |
The Allelic Landscape of Human Blood Cell Trait Va others(44): Show |
170,721 European ancestry individuals/ | GCNT2 | GCNT2 | rs605783-A | + | MODIFIER | chr6 | T | A |
|
chr6:10519657
|
c.-2229C>A | Monocyte count | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0004a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023others(219): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(219): Show |
Genetic determinants of blood-cell traits influenc others(59): Show |
234,690 European ancestry individuals/100,494 Euro others(25): Show |
GCNT2 | rs707794-C | + | MODIFIER | chr6 | C | A | |
|
chr6:10526140
|
c.-468-1334T>A | Monocyte count | a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0005a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013others(240): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(240): Show |
Trans-ethnic and Ancestry-Specific Blood-Cell Gene others(54): Show |
639,696 African American or Afro-Caribbean, Africa others(116): Show |
NR | GCNT2 | rs605783-A | + | MODIFIER | chr6 | T | A |
|
chr6:10519657
|
c.-2229C>A | Monocyte count0.030445 | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0004a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023others(219): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(219): Show |
Trans-ethnic and Ancestry-Specific Blood-Cell Gene others(54): Show |
521,594 European ancestry individuals/ | NR | GCNT2 | rs707794-A | + | MODIFIER | chr6 | C | A |
|
chr6:10534578
|
c.925+4742G>C | Lymphocyte count0.012859 | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(13): Show | a0001c0001t0001g0007a0001c0001t0001g0025a0001c0001t0001g0133a0001c0001t0001g0135a0001c0001t0001g0137others(157): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(157): Show |
Trans-ethnic and Ancestry-Specific Blood-Cell Gene others(54): Show |
524,923 European ancestry individuals/ | NR | GCNT2 | rs6911448-C | + | MODIFIER | chr6 | G | C |
|
chr6:10526140
|
c.-468-1334T>A | Lymphocyte count | a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0005a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013others(240): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(240): Show |
Trans-ethnic and Ancestry-Specific Blood-Cell Gene others(54): Show |
643,370 African American or Afro-Caribbean, Africa others(116): Show |
NR | GCNT2 | rs605783-A | + | MODIFIER | chr6 | T | A |
|
chr6:10518117
|
c.-3769G>A | White blood cell count0.014228 | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(17): Show | a0001c0001t0001g0004a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023others(194): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(194): Show |
Trans-ethnic and Ancestry-Specific Blood-Cell Gene others(54): Show |
562,243 European ancestry individuals/ | NR | GCNT2 | rs504117-A | + | MODIFIER | chr6 | G | A |
|
chr6:10526140
|
c.-468-1334T>A | White blood cell count | a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0005a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013others(240): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(240): Show |
Trans-ethnic and Ancestry-Specific Blood-Cell Gene others(54): Show |
746,667 African American or Afro-Caribbean, Africa others(116): Show |
NR | GCNT2 | rs605783-A | + | MODIFIER | chr6 | T | A |
|
chr6:10523142
|
c.-469+1725A>T | Serum urate levels0.0268 | a0001 | a0001c0001 | a0001c0001t0003a0001c0001t0010a0001c0001t0011a0001c0001t0023a0001c0001t0024others(1): Show | a0001c0001t0003g0229a0001c0001t0003g0230a0001c0001t0003g0231a0001c0001t0003g0232a0001c0001t0003g0233others(13): Show | HG01074.hp2 HG01175.hp2 HG01192.hp1 HG01433.hp2 HG02109.hp1 others(13): Show |
Large-scale cross-ancestry genome-wide meta-analys others(18): Show |
219,768 East Asian ancestry individuals, 677,373 E others(50): Show |
GCNT2 | rs539664-A | + | MODIFIER | chr6 | A | T | |
|
chr6:10535358
|
c.925+5522A>C | monocyte (absolute count, maximum, inv-norm transformed)others(23): Show | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(19): Show | a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013a0001c0001t0001g0014others(206): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(206): Show |
Diversity and scale: Genetic architecture of 2068 others(41): Show |
73,039 African American or Afro-Caribbean individu others(129): Show |
GCNT2 | rs509227-A | + | MODIFIER | chr6 | A | C | |
|
chr6:10539056
|
c.925+9220T>G | monocyte (absolute count, minimum, inv-norm transformed)others(23): Show | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(18): Show | a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023a0001c0001t0001g0024others(186): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(186): Show |
Diversity and scale: Genetic architecture of 2068 others(41): Show |
73,142 African American or Afro-Caribbean individu others(129): Show |
GCNT2 | rs1226013-T | + | MODIFIER | chr6 | T | G | |
|
chr6:10535358
|
c.925+5522A>C | monocyte (absolute count, mean, inv-norm transformed)others(20): Show | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(19): Show | a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013a0001c0001t0001g0014others(206): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(206): Show |
Diversity and scale: Genetic architecture of 2068 others(41): Show |
73,140 African American or Afro-Caribbean individu others(129): Show |
GCNT2 | rs509227-A | + | MODIFIER | chr6 | A | C | |
|
chr6:10535358
|
c.925+5522A>C | monocyte (fraction, mean, inv-norm transformed)others(14): Show | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(19): Show | a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013a0001c0001t0001g0014others(206): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(206): Show |
Diversity and scale: Genetic architecture of 2068 others(41): Show |
82,924 African American or Afro-Caribbean individu others(129): Show |
GCNT2 | rs509227-A | + | MODIFIER | chr6 | A | C | |
|
chr6:10519657
|
c.-2229C>A | Monocyte count0.030983908 | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0004a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023others(219): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(219): Show |
The Polygenic and Monogenic Basis of Blood Traits others(13): Show |
408,112 British individuals/ | GCNT2 | GCNT2 | rs707794-C | + | MODIFIER | chr6 | C | A |
|
chr6:10533230
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c.925+3394T>C |
Monocyte percentage of white cells0.0221 others(5): Show |
a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(19): Show | a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023a0001c0001t0001g0024others(196): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(196): Show |
The Polygenic and Monogenic Basis of Blood Traits others(13): Show |
408,112 British individuals/ | GCNT2 | GCNT2 | rs809479-C | + | MODIFIER | chr6 | T | C |
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chr6:10535358
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c.925+5522A>C | monocyte (absolute count, maximum, inv-norm transformed)others(23): Show | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(19): Show | a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013a0001c0001t0001g0014others(206): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(206): Show |
Diversity and scale: Genetic architecture of 2068 others(41): Show |
259,269 European ancestry individuals/ | GCNT2 | rs509227-A | + | MODIFIER | chr6 | A | C | |
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chr6:10519657
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c.-2229C>A | Monocyte count0.0232 | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(20): Show | a0001c0001t0001g0004a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023others(219): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(219): Show |
A cross-population atlas of genetic associations f others(24): Show |
349,856 European ancestry individuals, 95,119 East others(28): Show |
GCNT2 | rs707794-A | + | MODIFIER | chr6 | C | A | |
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chr6:10539056
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c.925+9220T>G | CD22/FCRL1 protein level ratio0.139862 | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(18): Show | a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023a0001c0001t0001g0024others(186): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(186): Show |
Genetic associations with ratios between protein l others(63): Show |
43,509 European ancestry individuals/ | GCNT2 | rs111916869-? | + | MODIFIER | chr6 | T | G | |
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chr6:10528201
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c.-281-430A>G |
FCRL1/TNFRSF13C protein level ratio0.110 others(2): Show |
a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(12): Show | a0001c0001t0001g0007a0001c0001t0001g0133a0001c0001t0001g0135a0001c0001t0001g0137a0001c0001t0001g0138others(163): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(163): Show |
Genetic associations with ratios between protein l others(63): Show |
43,509 European ancestry individuals/ | GCNT2 | rs111904887-? | + | MODIFIER | chr6 | A | G | |
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chr6:10528201
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c.-281-430A>G | CD163/MSR1 protein level ratio0.0958037 | a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(12): Show | a0001c0001t0001g0007a0001c0001t0001g0133a0001c0001t0001g0135a0001c0001t0001g0137a0001c0001t0001g0138others(163): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(163): Show |
Genetic associations with ratios between protein l others(63): Show |
43,509 European ancestry individuals/ | GCNT2 | rs111904887-? | + | MODIFIER | chr6 | A | G | |
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chr6:10528201
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c.-281-430A>G | ALCAM/LRRC25 protein level ratio0.302124 | a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(12): Show | a0001c0001t0001g0007a0001c0001t0001g0133a0001c0001t0001g0135a0001c0001t0001g0137a0001c0001t0001g0138others(163): Show | HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp2 others(163): Show |
Genetic associations with ratios between protein l others(63): Show |
43,509 European ancestry individuals/ | GCNT2 | rs111904887-? | + | MODIFIER | chr6 | A | G | |
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chr6:10539056
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c.925+9220T>G |
HAVCR2/TNFRSF1B protein level ratio0.078 others(3): Show |
a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(18): Show | a0001c0001t0001g0007a0001c0001t0001g0021a0001c0001t0001g0022a0001c0001t0001g0023a0001c0001t0001g0024others(186): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(186): Show |
Genetic associations with ratios between protein l others(63): Show |
43,509 European ancestry individuals/ | GCNT2 | rs111916869-? | + | MODIFIER | chr6 | T | G | |
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chr6:10535358
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c.925+5522A>C | Monocyte percentage (UKB data field 30190)others(13): Show | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(19): Show | a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013a0001c0001t0001g0014others(206): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(206): Show |
A scalable variational inference approach for incr others(36): Show |
394,642 European ancestry individuals/ | GCNT2 | rs509227-C | + | MODIFIER | chr6 | A | C | |
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chr6:10535358
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c.925+5522A>C |
Monocyte count (UKB data field 30130)0.0 others(8): Show |
a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(19): Show | a0001c0001t0001g0007a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0013a0001c0001t0001g0014others(206): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(206): Show |
A scalable variational inference approach for incr others(36): Show |
394,642 European ancestry individuals/ | GCNT2 | rs509227-C | + | MODIFIER | chr6 | A | C | |
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chr6:10534578
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c.925+4742G>C | B3GNT7 protein levels0.03983906 | a0001a0002 | a0001c0001a0001c0002a0001c0003a0002c0004 | a0001c0001t0001a0001c0001t0002a0001c0001t0003a0001c0001t0004a0001c0001t0005others(13): Show | a0001c0001t0001g0007a0001c0001t0001g0025a0001c0001t0001g0133a0001c0001t0001g0135a0001c0001t0001g0137others(157): Show | HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 others(157): Show |
A scalable variational inference approach for incr others(36): Show |
47,745 European ancestry individuals/ | GCNT2 | rs6911448-C | + | MODIFIER | chr6 | G | C |