Pfam Domain Viewer — COPA COPA_chr1_160283594_160348250

Per-haplotype Pfam domain annotations from JoGo haplotype-resolved proteome

Gene Information
GeneCOPA
NCBI Gene IDGeneID:1314
HGNCHGNC:2230
RefSeq ProteinNP_004362.2
Protein Length1224 aa
Haplotypes9
Distinct Architectures3
Ref (a0001) ArchitectureBeta-prop_WDR36-Utp21_1st(2-79)->Beta-prop_WDR3_1st(4-164)->WD40_CDC20-Fz(4-162)->Beta-prop_EIPR1(4-120)->WD40_Prp19(6-59)->Beta-prop_THOC3(7-128)->Beta-prop_EML(8-85)->WDR55(11-168)->Beta-prop_WDR3_2nd(12-83)->Beta-prop_IFT122_1st(13-82)->Beta-prop_EML_2(13-141)->WD40_Gbeta(24-123)->WD40_MABP1-WDR62_2nd(30-172)->WD40(43-79)->Beta-prop_TEP1_2nd(48-171)->Beta-prop_WDR36-Utp21_2nd(49-165)->Beta-prop_WDR41(49-163)->WD40_Prp19(57-165)->Beta-prop_SCAP(67-166)->WD40(84-121)->Beta-prop_IFT122_1st(85-165)->Beta-prop_CAF1B_HIR1(87-167)->Beta-prop_WDR5(88-165)->Beta-prop_WDR3_2nd(88-163)->EIF3I(89-165)->WD40_WDHD1_1st(99-166)->Beta-prop_WDR36-Utp21_1st(99-162)->Beta-prop_EIPR1(106-162)->Beta-prop_WDR75_1st(107-164)->Beta-prop_THOC3(108-165)->WD40_Gbeta(108-183)->Beta-prop_EML(110-166)->Beta-prop_WDR90_POC16_2nd(110-165)->WD40_MABP1-WDR62_1st(115-164)->WD40(126-163)->Beta-prop_NOL10_N(133-323)->Beta-prop_WDR5(187-316)->Beta-prop_WDR3_1st(187-318)->WD40_Prp19(187-315)->Beta-prop_IFT122_1st(187-319)->WD40_Gbeta(194-287)->WD40_CDC20-Fz(195-287)->WD40(198-232)->Beta-prop_TEP1_2nd(198-319)->EIF3I(200-287)->Beta-prop_CAF1B_HIR1(200-302)->Beta-prop_WDR3_2nd(203-317)->Beta-prop_EML(203-352)->Beta-prop_THOC3(204-317)->Beta-prop_WDR36-Utp21_2nd(205-317)->WD40_WDHD1_1st(208-287)->WDR55(208-316)->Beta-prop_EML_2(212-361)->ANAPC4_WD40(212-291)->WD40_CDC20-Fz(226-321)->WD40(242-277)->WD40_Gbeta(242-313)->WD40_RFWD3(248-316)->Beta-prop_WDR90_POC16_2nd(267-320)->B-prop_COPA_B_2nd(341-582)->TPR_COPA_B(610-766)->COPI_C(815-1224)
Domain Architecture Diagram
Domain Differences vs Reference (a0001)
Haplotype ▲▼ Diff Type ▲▼ Pfam Acc ▲▼ Domain Name ▲▼ Ref Coords ▲▼ Alt Coords ▲▼ Ref Score ▲▼ Alt Score ▲▼
Haplotype Domain Details
Summary Statistics