Pfam Domain Viewer — HSPG2 HSPG2_chr1_21817244_21942310

Per-haplotype Pfam domain annotations from JoGo haplotype-resolved proteome

Gene Information
GeneHSPG2
NCBI Gene IDGeneID:3339
HGNCHGNC:5273
RefSeq ProteinNP_005520.4
Protein Length4391 aa
Haplotypes83
Distinct Architectures5
Ref (a0001) ArchitectureLdl_recept_a(198-234)->Ldl_recept_a(284-319)->Ldl_recept_a(324-359)->Ldl_recept_a(368-403)->Ig_3(405-483)->I-set(406-486)->Ig_2(413-486)->ig(416-486)->Laminin_B(595-729)->EGF_laminin(764-806)->EGF_LMN_ATRN(764-806)->EGF_laminin(814-869)->EGF_LMN_ATRN(835-869)->EGF_laminin(869-921)->Laminin_B(990-1124)->EGF_laminin(1159-1206)->EGF_LMN_ATRN(1159-1202)->EGF_laminin(1209-1263)->EGF_LMN_ATRN(1231-1263)->EGF_laminin(1275-1322)->Laminin_B(1396-1528)->EGF_laminin(1563-1610)->EGF_LMN_ATRN(1563-1606)->EGF_laminin(1613-1668)->EGF_LMN_ATRN(1635-1668)->Ig_3(1679-1750)->I-set(1681-1763)->Ig_2(1681-1758)->ig(1688-1758)->Ig_3(1776-1844)->I-set(1777-1857)->Ig_2(1778-1844)->ig(1781-1844)->V-set(1822-1857)->Ig_3(1866-1936)->I-set(1866-1950)->Ig_2(1870-1945)->Ig_3(1956-2028)->I-set(1956-2042)->Ig_2(1958-2032)->ig(1965-2037)->Ig_3(2050-2121)->I-set(2054-2134)->Ig_2(2054-2133)->ig(2059-2129)->Ig_3(2154-2220)->I-set(2154-2235)->Ig_2(2155-2221)->ig(2162-2226)->Ig_3(2246-2315)->I-set(2247-2319)->Ig_2(2248-2325)->ig(2253-2315)->Ig_3(2343-2409)->I-set(2343-2423)->Ig_2(2344-2409)->ig(2349-2410)->Ig_3(2437-2505)->I-set(2437-2520)->Ig_2(2440-2518)->ig(2445-2514)->Ig_3(2538-2604)->Ig_2(2538-2616)->I-set(2539-2617)->ig(2544-2611)->Ig_3(2630-2700)->I-set(2632-2713)->Ig_2(2633-2701)->ig(2638-2701)->Ig_3(2729-2795)->Ig_2(2730-2800)->I-set(2731-2810)->ig(2737-2800)->Ig_3(2827-2896)->I-set(2828-2910)->Ig_2(2830-2908)->ig(2836-2899)->Ig_3(2929-2993)->Ig_2(2929-3009)->I-set(2932-3009)->ig(2935-3000)->Ig_3(3022-3095)->I-set(3022-3108)->Ig_2(3025-3107)->ig(3029-3103)->Ig_3(3111-3189)->I-set(3121-3202)->Ig_2(3124-3202)->ig(3124-3196)->Ig_3(3212-3281)->Ig_2(3212-3284)->I-set(3213-3295)->ig(3220-3289)->Ig_3(3298-3369)->I-set(3299-3382)->Ig_2(3306-3372)->ig(3309-3376)->Ig_3(3400-3469)->Ig_2(3402-3476)->I-set(3403-3482)->ig(3410-3478)->Ig_2(3492-3571)->Ig_3(3493-3559)->I-set(3494-3572)->ig(3499-3565)->Ig_3(3576-3645)->Ig_2(3576-3652)->I-set(3580-3658)->ig(3583-3652)->Laminin_G_1(3692-3829)->Laminin_G_2(3692-3828)->EGF(3848-3879)->Laminin_G_2(3957-4085)->Laminin_G_1(3959-4088)->EGF(4108-4138)->Laminin_G_3(4227-4339)->Laminin_G_1(4234-4362)->Laminin_G_2(4234-4362)
Domain Architecture Diagram
Domain Differences vs Reference (a0001)
Haplotype ▲▼ Diff Type ▲▼ Pfam Acc ▲▼ Domain Name ▲▼ Ref Coords ▲▼ Alt Coords ▲▼ Ref Score ▲▼ Alt Score ▲▼
Haplotype Domain Details
Summary Statistics