Pfam Domain Viewer — USH2A USH2A_chr1_215617891_216428448

Per-haplotype Pfam domain annotations from JoGo haplotype-resolved proteome

Gene Information
GeneUSH2A
NCBI Gene IDGeneID:7399
HGNCHGNC:12601
RefSeq ProteinNP_996816.3
Protein Length5202 aa
Haplotypes72
Distinct Architectures3
Ref (a0001) ArchitectureLaminin_G_3(145-285)->Laminin_N(316-516)->EGF_laminin(518-560)->EGF_LMN_ATRN(518-564)->EGF_laminin(575-627)->EGF_LMN_ATRN(575-626)->EGF_laminin(641-691)->EGF_laminin(694-744)->EGF_laminin(747-789)->EGF_LMN_ATRN(747-787)->EGF_laminin(795-841)->EGF_laminin(847-897)->EGF_laminin(900-948)->EGF_laminin(951-997)->EGF_laminin(1002-1042)->fn3(1063-1134)->fn3(1158-1235)->fn3(1249-1348)->Pur_ac_phosph_N(1253-1357)->fn3(1372-1451)->Laminin_G_3(1524-1651)->Laminin_G_2(1548-1678)->Laminin_G_1(1548-1679)->Laminin_G_2(1744-1868)->Laminin_G_1(1744-1870)->fn3(1958-2046)->fn3(2153-2227)->fn3(2249-2313)->fn3(2329-2420)->fn3(2443-2522)->Pur_ac_phosph_N(2443-2528)->fn3(2543-2614)->fn3(2635-2717)->fn3(2732-2799)->fn3(2826-2918)->fn3(2930-3003)->fn3(3029-3090)->fn3(3503-3582)->fn3(3597-3670)->fn3(3693-3760)->fn3(3777-3851)->fn3(3880-3951)->fn3(3975-4051)->Pur_ac_phosph_N(3977-4060)->fn3(4070-4140)->fn3(4162-4253)->fn3(4275-4348)->fn3(4364-4428)->fn3(4455-4516)->fn3(4540-4615)->fn3(4652-4724)->fn3(4741-4808)->fn3(4839-4924)->Pur_ac_phosph_N(4842-4927)->FN3_DSCAM-DSCAML_C(4891-4928)
Domain Architecture Diagram
Domain Differences vs Reference (a0001)
Haplotype ▲▼ Diff Type ▲▼ Pfam Acc ▲▼ Domain Name ▲▼ Ref Coords ▲▼ Alt Coords ▲▼ Ref Score ▲▼ Alt Score ▲▼
Haplotype Domain Details
Summary Statistics