Search by Gene
| Item | Value |
|---|---|
| geneid | 51480 |
| ensemblid | ENSG00000177504.10 |
| hgncid | 18158 |
| symbol | VCX2 |
| name | variable charge X-linked 2 |
| refseq_nuc | NM_016378.3 |
| refseq_prot | NP_057462.2 |
| ensembl_nuc | ENST00000317103.5 |
| ensembl_prot | ENSP00000321309.4 |
| mane_status | MANE Select |
| chr | chrX |
| start | 8169944 |
| end | 8171267 |
| strand | - |
| ver | v1.2 |
| region | chrX:8169944-8171267 |
| region5000 | chrX:8164944-8176267 |
| regionname0 | VCX2_chrX_8169944_8171267 |
| regionname5000 | VCX2_chrX_8164944_8176267 |
Multiple Alignments (by translate haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
Multiple Alignments (by aa haplotype frequency)
| ahapid | grch38/chm13v2 | alen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/0 | 139 | 24 | 1 | 3 | 11 | 2 | 7 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0002 | 0/0 | 139 | 22 | 10 | 1 | 11 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0003 | 0/0 | 139 | 17 | 6 | 1 | 9 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0004 | 1/0 | 139 | 11 | 1 | 6 | 1 | 1 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0005 | 0/0 | 139 | 8 | 1 | 4 | 0 | 0 | 3 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0006 | 0/0 | 139 | 7 | 7 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0007 | 0/0 | 159 | 3 | 2 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(154): Show |
chrX | 8164944 | 8176267 |
| a0008 | 0/0 | 139 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0009 | 0/0 | 139 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0010 | 0/0 | 139 | 2 | 1 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0011 | 0/0 | 139 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0012 | 0/0 | 139 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0013 | 0/0 | 159 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(154): Show |
chrX | 8164944 | 8176267 |
| a0014 | 0/0 | 114 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(109): Show |
chrX | 8164944 | 8176267 |
| a0015 | 0/0 | 139 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0016 | 0/0 | 61 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(56): Show |
chrX | 8164944 | 8176267 |
| a0017 | 0/0 | 61 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(56): Show |
chrX | 8164944 | 8176267 |
| a0018 | 0/0 | 139 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0019 | 0/0 | 103 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(98): Show |
chrX | 8164944 | 8176267 |
| a0020 | 0/0 | 114 | 1 | 0 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(109): Show |
chrX | 8164944 | 8176267 |
| a0021 | 0/0 | 113 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(108): Show |
chrX | 8164944 | 8176267 |
| a0022 | 0/0 | 139 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0023 | 0/0 | 61 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(56): Show |
chrX | 8164944 | 8176267 |
| a0024 | 0/0 | 139 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0025 | 0/0 | 61 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(56): Show |
chrX | 8164944 | 8176267 |
| a0026 | 0/0 | 139 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSPKP others(134): Show |
chrX | 8164944 | 8176267 |
| a0027 | 0/0 | 139 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | MSSKP others(134): Show |
chrX | 8164944 | 8176267 |
| achapid | grch38/chm13v2 | alen | clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aseq | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0002 | 0/0 | 420 | 22 | 1 | 3 | 11 | 2 | 5 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0001c0026 | 0/0 | 420 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0001c0028 | 0/0 | 420 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0002c0001 | 0/0 | 420 | 22 | 10 | 1 | 11 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0003c0003 | 0/0 | 420 | 14 | 5 | 0 | 8 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0003c0009 | 0/0 | 420 | 2 | 1 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0003c0014 | 0/0 | 420 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0004c0004 | 1/0 | 420 | 11 | 1 | 6 | 1 | 1 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0005c0006 | 0/0 | 420 | 6 | 1 | 2 | 0 | 0 | 3 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0005c0011 | 0/0 | 420 | 2 | 0 | 2 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0006c0005 | 0/0 | 420 | 6 | 6 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0006c0013 | 0/0 | 420 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0007c0007 | 0/0 | 480 | 3 | 2 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(475): Show |
chrX | 8164944 | 8176267 | ||
| a0008c0008 | 0/0 | 420 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0009c0010 | 0/0 | 420 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0010c0020 | 0/0 | 420 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0010c0022 | 0/0 | 420 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0011c0012 | 0/0 | 420 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0012c0032 | 0/0 | 420 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0013c0027 | 0/0 | 480 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(475): Show |
chrX | 8164944 | 8176267 | ||
| a0014c0029 | 0/0 | 422 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(417): Show |
chrX | 8164944 | 8176267 | ||
| a0015c0030 | 0/0 | 420 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0016c0031 | 0/0 | 418 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(413): Show |
chrX | 8164944 | 8176267 | ||
| a0017c0016 | 0/0 | 418 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(413): Show |
chrX | 8164944 | 8176267 | ||
| a0018c0017 | 0/0 | 420 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0019c0023 | 0/0 | 419 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(414): Show |
chrX | 8164944 | 8176267 | ||
| a0020c0021 | 0/0 | 421 | 1 | 0 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(416): Show |
chrX | 8164944 | 8176267 | ||
| a0021c0019 | 0/0 | 419 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(414): Show |
chrX | 8164944 | 8176267 | ||
| a0022c0018 | 0/0 | 420 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0023c0024 | 0/0 | 418 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(413): Show |
chrX | 8164944 | 8176267 | ||
| a0024c0025 | 0/0 | 420 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0025c0015 | 0/0 | 420 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0026c0033 | 0/0 | 420 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 | ||
| a0027c0034 | 0/0 | 420 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGAG others(415): Show |
chrX | 8164944 | 8176267 |
| acthapid | grch38/chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0002t0001 | 0/0 | 815 | 22 | 1 | 3 | 11 | 2 | 5 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0001c0026t0001 | 0/0 | 815 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0001c0028t0001 | 0/0 | 815 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0002c0001t0001 | 0/0 | 815 | 15 | 8 | 1 | 6 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0002c0001t0002 | 0/0 | 815 | 3 | 0 | 0 | 3 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0002c0001t0003 | 0/0 | 815 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0002c0001t0007 | 0/0 | 815 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0002c0001t0013 | 0/0 | 816 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(811): Show |
chrX | 8164944 | 8176267 |
| a0002c0001t0014 | 0/0 | 816 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(811): Show |
chrX | 8164944 | 8176267 |
| a0003c0003t0001 | 0/0 | 815 | 14 | 5 | 0 | 8 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0003c0009t0001 | 0/0 | 815 | 2 | 1 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0003c0014t0001 | 0/0 | 815 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0004c0004t0003 | 1/0 | 815 | 11 | 1 | 6 | 1 | 1 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0005c0006t0001 | 0/0 | 815 | 2 | 0 | 2 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0005c0006t0002 | 0/0 | 815 | 4 | 1 | 0 | 0 | 0 | 3 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0005c0011t0004 | 0/0 | 815 | 2 | 0 | 2 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0006c0005t0001 | 0/0 | 815 | 3 | 3 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0006c0005t0005 | 0/0 | 815 | 3 | 3 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0006c0013t0010 | 0/0 | 815 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0007c0007t0002 | 0/0 | 875 | 1 | 0 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(870): Show |
chrX | 8164944 | 8176267 |
| a0007c0007t0006 | 0/0 | 875 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(870): Show |
chrX | 8164944 | 8176267 |
| a0008c0008t0002 | 0/0 | 815 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0009c0010t0002 | 0/0 | 815 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0010c0020t0001 | 0/0 | 815 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0010c0022t0004 | 0/0 | 815 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0011c0012t0001 | 0/0 | 815 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0012c0032t0001 | 0/0 | 815 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0013c0027t0001 | 0/0 | 875 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(870): Show |
chrX | 8164944 | 8176267 |
| a0014c0029t0001 | 0/0 | 817 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(812): Show |
chrX | 8164944 | 8176267 |
| a0015c0030t0001 | 0/0 | 815 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0016c0031t0011 | 0/0 | 813 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(808): Show |
chrX | 8164944 | 8176267 |
| a0017c0016t0008 | 0/0 | 812 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(807): Show |
chrX | 8164944 | 8176267 |
| a0018c0017t0002 | 0/0 | 815 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0019c0023t0012 | 0/0 | 814 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(809): Show |
chrX | 8164944 | 8176267 |
| a0020c0021t0002 | 0/0 | 816 | 1 | 0 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(811): Show |
chrX | 8164944 | 8176267 |
| a0021c0019t0001 | 0/0 | 814 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(809): Show |
chrX | 8164944 | 8176267 |
| a0022c0018t0001 | 0/0 | 815 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0023c0024t0009 | 0/0 | 813 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(808): Show |
chrX | 8164944 | 8176267 |
| a0024c0025t0015 | 0/0 | 815 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0025c0015t0001 | 0/0 | 815 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0026c0033t0001 | 0/0 | 815 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| a0027c0034t0001 | 0/0 | 815 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | ATGTG others(810): Show |
chrX | 8164944 | 8176267 |
| actghapid | grch38/chm13v2 | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0002t0001g0001 | 0/0 | 16 | 0 | 1 | 11 | 2 | 2 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0001c0002t0001g0015 | 0/0 | 2 | 0 | 0 | 0 | 0 | 2 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0001c0002t0001g0039 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0001c0002t0001g0050 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0001c0002t0001g0052 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0001c0002t0001g0054 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0001c0026t0001g0038 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0001c0028t0001g0053 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0001g0003 | 0/0 | 5 | 3 | 1 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0001g0004 | 0/0 | 5 | 0 | 0 | 5 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0001g0014 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0001g0028 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0001g0035 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0001g0037 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0002g0005 | 0/0 | 3 | 0 | 0 | 3 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0003g0063 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0007g0019 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0013g0033 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0002c0001t0014g0034 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0003c0003t0001g0002 | 0/0 | 10 | 2 | 0 | 7 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0003c0003t0001g0008 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0003c0003t0001g0047 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0003c0009t0001g0017 | 0/0 | 2 | 1 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0003c0014t0001g0048 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0004c0004t0003g0009 | 1/0 | 3 | 0 | 2 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0004c0004t0003g0010 | 0/0 | 3 | 0 | 2 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0004c0004t0003g0058 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0004c0004t0003g0059 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0004c0004t0003g0060 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0004c0004t0003g0061 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0004c0004t0003g0062 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0005c0006t0001g0018 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0005c0006t0002g0011 | 0/0 | 2 | 0 | 0 | 0 | 0 | 2 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0005c0006t0002g0021 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0005c0006t0002g0043 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0005c0011t0004g0016 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0006c0005t0001g0006 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0006c0005t0005g0007 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0006c0013t0010g0027 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0007c0007t0002g0022 | 0/0 | 1 | 0 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0007c0007t0006g0024 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0007c0007t0006g0025 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0008c0008t0002g0012 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0009c0010t0002g0013 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0010c0020t0001g0036 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0010c0022t0004g0045 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0011c0012t0001g0026 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0012c0032t0001g0040 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0013c0027t0001g0051 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0014c0029t0001g0057 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0015c0030t0001g0055 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0016c0031t0011g0049 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0017c0016t0008g0020 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0018c0017t0002g0042 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0019c0023t0012g0046 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0020c0021t0002g0023 | 0/0 | 1 | 0 | 0 | 0 | 1 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0021c0019t0001g0031 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0022c0018t0001g0032 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0023c0024t0009g0029 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0024c0025t0015g0044 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0025c0015t0001g0030 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0026c0033t0001g0056 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| a0027c0034t0001g0041 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| sampleid | haplotypeid | ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG00280 | hp1 | a0001 | c0002 | t0001 | g0001 | EUR | FIN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00323 | hp1 | a0007 | c0007 | t0002 | g0022 | EUR | FIN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00323 | hp2 | a0001 | c0002 | t0001 | g0001 | EUR | FIN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00609 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | CHS | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00621 | hp1 | a0018 | c0017 | t0002 | g0042 | EAS | CHS | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00639 | hp1 | a0004 | c0004 | t0003 | g0010 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00639 | hp2 | a0004 | c0004 | t0003 | g0059 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00642 | hp1 | a0001 | c0002 | t0001 | g0052 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00733 | hp1 | a0005 | c0006 | t0001 | g0018 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG00733 | hp2 | a0001 | c0002 | t0001 | g0001 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01099 | hp1 | a0004 | c0004 | t0003 | g0060 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01106 | hp1 | a0002 | c0001 | t0001 | g0003 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01167 | hp1 | a0003 | c0009 | t0001 | g0017 | AMR | PUR | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01256 | hp1 | a0005 | c0011 | t0004 | g0016 | AMR | CLM | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01261 | hp1 | a0027 | c0034 | t0001 | g0041 | AMR | CLM | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01358 | hp1 | a0004 | c0004 | t0003 | g0010 | AMR | CLM | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01433 | hp1 | a0004 | c0004 | t0003 | g0009 | AMR | CLM | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01934 | hp1 | a0014 | c0029 | t0001 | g0057 | AMR | PEL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01943 | hp1 | a0019 | c0023 | t0012 | g0046 | AMR | PEL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG01952 | hp1 | a0005 | c0011 | t0004 | g0016 | AMR | PEL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02015 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02027 | hp1 | a0003 | c0003 | t0001 | g0002 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02055 | hp1 | a0006 | c0005 | t0001 | g0006 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02056 | hp1 | a0004 | c0004 | t0003 | g0061 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02071 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02074 | hp1 | a0002 | c0001 | t0014 | g0034 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02083 | hp1 | a0003 | c0014 | t0001 | g0048 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02129 | hp1 | a0003 | c0003 | t0001 | g0002 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02135 | hp1 | a0003 | c0003 | t0001 | g0047 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02145 | hp1 | a0006 | c0013 | t0010 | g0027 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02165 | hp1 | a0002 | c0001 | t0001 | g0004 | EAS | CDX | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02165 | hp2 | a0003 | c0003 | t0001 | g0002 | EAS | CDX | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02258 | hp1 | a0006 | c0005 | t0001 | g0006 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02293 | hp1 | a0001 | c0002 | t0001 | g0050 | AMR | PEL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02293 | hp2 | a0004 | c0004 | t0003 | g0009 | AMR | PEL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02300 | hp1 | a0005 | c0006 | t0001 | g0018 | AMR | PEL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02523 | hp1 | a0025 | c0015 | t0001 | g0030 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02523 | hp2 | a0001 | c0002 | t0001 | g0001 | EAS | KHV | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02572 | hp1 | a0002 | c0001 | t0001 | g0003 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02615 | hp1 | a0006 | c0005 | t0001 | g0006 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02615 | hp2 | a0007 | c0007 | t0006 | g0024 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02647 | hp1 | a0002 | c0001 | t0001 | g0035 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02683 | hp1 | a0005 | c0006 | t0002 | g0011 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02683 | hp2 | a0010 | c0022 | t0004 | g0045 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02698 | hp1 | a0001 | c0028 | t0001 | g0053 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02717 | hp1 | a0006 | c0005 | t0005 | g0007 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02735 | hp1 | a0001 | c0002 | t0001 | g0015 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02818 | hp1 | a0021 | c0019 | t0001 | g0031 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02818 | hp2 | a0009 | c0010 | t0002 | g0013 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02886 | hp1 | a0002 | c0001 | t0001 | g0028 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02886 | hp2 | a0004 | c0004 | t0003 | g0058 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02922 | hp1 | a0003 | c0003 | t0001 | g0008 | AFR | ESN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02922 | hp2 | a0008 | c0008 | t0002 | g0012 | AFR | ESN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02965 | hp1 | a0003 | c0009 | t0001 | g0017 | AFR | ESN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03017 | hp1 | a0004 | c0004 | t0003 | g0062 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03041 | hp1 | a0010 | c0020 | t0001 | g0036 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03041 | hp2 | a0002 | c0001 | t0003 | g0063 | AFR | GWD | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03098 | hp1 | a0003 | c0003 | t0001 | g0008 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03130 | hp1 | a0008 | c0008 | t0002 | g0012 | AFR | ESN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03139 | hp1 | a0022 | c0018 | t0001 | g0032 | AFR | ESN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03225 | hp1 | a0002 | c0001 | t0001 | g0003 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03453 | hp1 | a0001 | c0002 | t0001 | g0039 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03453 | hp2 | a0002 | c0001 | t0007 | g0019 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03486 | hp1 | a0002 | c0001 | t0001 | g0003 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03486 | hp2 | a0005 | c0006 | t0002 | g0043 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03490 | hp1 | a0016 | c0031 | t0011 | g0049 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03491 | hp1 | a0001 | c0002 | t0001 | g0001 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03491 | hp2 | a0005 | c0006 | t0002 | g0021 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03492 | hp1 | a0005 | c0006 | t0002 | g0011 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03516 | hp1 | a0002 | c0001 | t0001 | g0037 | AFR | ESN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03516 | hp2 | a0009 | c0010 | t0002 | g0013 | AFR | ESN | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03579 | hp1 | a0007 | c0007 | t0006 | g0025 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03710 | hp1 | a0001 | c0026 | t0001 | g0038 | SAS | PJL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03831 | hp1 | a0001 | c0002 | t0001 | g0054 | SAS | BEB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03831 | hp2 | a0003 | c0003 | t0001 | g0002 | SAS | BEB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03834 | hp1 | a0001 | c0002 | t0001 | g0001 | SAS | BEB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03834 | hp2 | a0001 | c0002 | t0001 | g0015 | SAS | BEB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG04115 | hp1 | a0023 | c0024 | t0009 | g0029 | SAS | STU | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG04228 | hp1 | a0017 | c0016 | t0008 | g0020 | SAS | STU | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18522 | hp1 | a0011 | c0012 | t0001 | g0026 | AFR | YRI | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18612 | hp1 | a0026 | c0033 | t0001 | g0056 | EAS | CHB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18747 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | CHB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18943 | hp1 | a0024 | c0025 | t0015 | g0044 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18948 | hp1 | a0002 | c0001 | t0001 | g0004 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18949 | hp1 | a0003 | c0003 | t0001 | g0002 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18949 | hp2 | a0001 | c0002 | t0001 | g0001 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18951 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18951 | hp2 | a0002 | c0001 | t0002 | g0005 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18952 | hp1 | a0015 | c0030 | t0001 | g0055 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18962 | hp1 | a0002 | c0001 | t0013 | g0033 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18966 | hp1 | a0002 | c0001 | t0002 | g0005 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18986 | hp1 | a0002 | c0001 | t0001 | g0004 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA18995 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19004 | hp1 | a0003 | c0003 | t0001 | g0002 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19005 | hp1 | a0003 | c0003 | t0001 | g0002 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19007 | hp1 | a0002 | c0001 | t0001 | g0003 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19056 | hp1 | a0002 | c0001 | t0002 | g0005 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19060 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19063 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19065 | hp1 | a0013 | c0027 | t0001 | g0051 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19065 | hp2 | a0002 | c0001 | t0001 | g0004 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19066 | hp1 | a0002 | c0001 | t0001 | g0004 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19076 | hp1 | a0003 | c0003 | t0001 | g0002 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA19085 | hp1 | a0001 | c0002 | t0001 | g0001 | EAS | JPT | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA20752 | hp1 | a0004 | c0004 | t0003 | g0010 | EUR | TSI | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA20805 | hp1 | a0020 | c0021 | t0002 | g0023 | EUR | TSI | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02109 | hp1 | a0002 | c0001 | t0001 | g0014 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02109 | hp2 | a0003 | c0003 | t0001 | g0002 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02486 | hp1 | a0012 | c0032 | t0001 | g0040 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02559 | hp1 | a0006 | c0005 | t0005 | g0007 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG02559 | hp2 | a0003 | c0003 | t0001 | g0002 | AFR | ACB | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| HG03471 | hp1 | a0003 | c0003 | t0001 | g0008 | AFR | MSL | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA20300 | hp1 | a0006 | c0005 | t0005 | g0007 | AFR | USA | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| NA20300 | hp2 | a0002 | c0001 | t0001 | g0014 | AFR | USA | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| homoSapiens_grch38 | hp1 | a0004 | c0004 | t0003 | g0009 | REF | REF | VCX2_chrX_8164944_8176267 | VCX2 | chrX | 8164944 | 8176267 |
| view | chr:pos | ref | alt | # # of ahapid:amio-acid(protein) level
|
ahapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:8170039 | G | C | 26 | a0001a0002a0003others(23): Show | 104 | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(101): Show |
missense_variant | MODERATE | c.413C>G | p.Thr138Ser | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 720/815 | 413/420 | 138/139 | chrX | 8170039 | |||
| chrX:8170053 | AG | A | 1 | a0020 | 1 | NA20805.hp1 | frameshift_variant | HIGH | c.398delC | p.Pro133fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 705/815 | 398/420 | 133/139 | chrX | 8170053 | |||
| chrX:8170057 | GA | G | 1 | a0016 | 1 | HG03490.hp1 | frameshift_variant | HIGH | c.394delT | p.Ser132fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 701/815 | 394/420 | 132/139 | chrX | 8170057 | |||
| chrX:8170097 | C | CGCTCTCC others(23): Show |
1 | a0007 | 1 | HG03579.hp1 | conservative_inframe_insertion | MODERATE | c.354_355insCAGGTGGA others(22): Show |
p.Ser118_Glu119insGl others(28): Show |
VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 661/815 | 354/420 | 118/139 | chrX | 8170097 | |||
| chrX:8170102 | T | TC | 1 | a0025 | 1 | HG02523.hp1 | frameshift_variant | HIGH | c.349dupG | p.Glu117fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 656/815 | 349/420 | 117/139 | chrX | 8170102 | |||
| chrX:8170115 | G | GT | 1 | a0020 | 1 | NA20805.hp1 | frameshift_variant | HIGH | c.336dupA | p.Pro113fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 643/815 | 336/420 | 112/139 | chrX | 8170115 | |||
| chrX:8170124 | C | G | 24 | a0001a0002a0003others(21): Show | 100 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(97): Show |
missense_variant | MODERATE | c.328G>C | p.Val110Leu | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 635/815 | 328/420 | 110/139 | chrX | 8170124 | |||
| chrX:8170127 | C | CG | 1 | a0020 | 1 | NA20805.hp1 | frameshift_variant | HIGH | c.324dupC | p.Glu109fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 631/815 | 324/420 | 108/139 | chrX | 8170127 | |||
| chrX:8170127 | C | G | 2 | a0007a0013 | 3 | HG00323.hp1 HG02615.hp2 NA19065.hp1 |
missense_variant | MODERATE | c.325G>C | p.Glu109Gln | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 632/815 | 325/420 | 109/139 | chrX | 8170127 | |||
| chrX:8170129 | C | G | 22 | a0001a0002a0003others(19): Show | 97 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(94): Show |
missense_variant | MODERATE | c.323G>C | p.Ser108Thr | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 630/815 | 323/420 | 108/139 | chrX | 8170129 | |||
| chrX:8170130 | T | C | 23 | a0001a0002a0003others(20): Show | 98 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(95): Show |
missense_variant | MODERATE | c.322A>G | p.Ser108Gly | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 629/815 | 322/420 | 108/139 | chrX | 8170130 | |||
| chrX:8170130 | T | TCTCCTGA others(23): Show |
1 | a0007 | 1 | HG03579.hp1 | conservative_inframe_insertion | MODERATE | c.321_322insGCCGAGCT others(22): Show |
p.Glu107_Ser108insAl others(28): Show |
VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 628/815 | 321/420 | 107/139 | chrX | 8170130 | |||
| chrX:8170130 | T | TCTCCTGA others(53): Show |
1 | a0007 | 2 | HG00323.hp1 HG02615.hp2 |
conservative_inframe_insertion | MODERATE | c.321_322insGCCGAGCT others(52): Show |
p.Glu107_Ser108insAl others(58): Show |
VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 628/815 | 321/420 | 107/139 | chrX | 8170130 | |||
| chrX:8170131 | C | A | 1 | a0020 | 1 | NA20805.hp1 | missense_variant | MODERATE | c.321G>T | p.Glu107Asp | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 628/815 | 321/420 | 107/139 | chrX | 8170131 | |||
| chrX:8170140 | CA | C | 1 | a0021 | 1 | HG02818.hp1 | frameshift_variant | HIGH | c.311delT | p.Leu104fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 618/815 | 311/420 | 104/139 | chrX | 8170140 | |||
| chrX:8170141 | A | AGTGGTTC others(53): Show |
1 | a0013 | 1 | NA19065.hp1 | conservative_inframe_insertion | MODERATE | c.310_311insCGAGTCAG others(52): Show |
p.Pro103_Leu104insPr others(58): Show |
VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 617/815 | 310/420 | 104/139 | chrX | 8170141 | |||
| chrX:8170141 | A | G | 15 | a0001a0002a0006others(12): Show | 65 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(62): Show |
missense_variant | MODERATE | c.311T>C | p.Leu104Pro | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 618/815 | 311/420 | 104/139 | chrX | 8170141 | |||
| chrX:8170141 | AG | A | 1 | a0019 | 1 | HG01943.hp1 | frameshift_variant | HIGH | c.310delC | p.Leu104fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 617/815 | 310/420 | 104/139 | chrX | 8170141 | |||
| chrX:8170157 | T | TC | 1 | a0014 | 1 | HG01934.hp1 | frameshift_variant | HIGH | c.294dupG | p.Thr99fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 601/815 | 294/420 | 98/139 | chrX | 8170157 | |||
| chrX:8170163 | C | G | 1 | a0022 | 1 | HG03139.hp1 | missense_variant | MODERATE | c.289G>C | p.Glu97Gln | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 596/815 | 289/420 | 97/139 | chrX | 8170163 | |||
| chrX:8170211 | TG | T | 1 | a0023 | 1 | HG04115.hp1 | frameshift_variant | HIGH | c.240delC | p.Ser81fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 547/815 | 240/420 | 80/139 | chrX | 8170211 | |||
| chrX:8170227 | GC | G | 1 | a0017 | 1 | HG04228.hp1 | frameshift_variant | HIGH | c.224delG | p.Gly75fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 531/815 | 224/420 | 75/139 | chrX | 8170227 | |||
| chrX:8170243 | G | C | 22 | a0001a0002a0003others(19): Show | 98 | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(95): Show |
missense_variant | MODERATE | c.209C>G | p.Ala70Gly | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 516/815 | 209/420 | 70/139 | chrX | 8170243 | |||
| chrX:8170249 | T | TC | 1 | a0014 | 1 | HG01934.hp1 | frameshift_variant | HIGH | c.202dupG | p.Glu68fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 509/815 | 202/420 | 68/139 | chrX | 8170249 | |||
| chrX:8170326 | TC | T | 1 | a0017 | 1 | HG04228.hp1 | frameshift_variant | HIGH | c.125delG | p.Gly42fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 432/815 | 125/420 | 42/139 | chrX | 8170326 | |||
| chrX:8170339 | AC | A | 1 | a0023 | 1 | HG04115.hp1 | frameshift_variant | HIGH | c.112delG | p.Val38fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 419/815 | 112/420 | 38/139 | chrX | 8170339 | |||
| chrX:8170555 | T | C | 2 | a0015a0024 | 2 | NA18943.hp1 NA18952.hp1 |
missense_variant | MODERATE | c.89A>G | p.Asp30Gly | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 396/815 | 89/420 | 30/139 | chrX | 8170555 | |||
| chrX:8170559 | TG | T | 1 | a0025 | 1 | HG02523.hp1 | frameshift_variant | HIGH | c.84delC | p.Ser29fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 391/815 | 84/420 | 28/139 | chrX | 8170559 | |||
| chrX:8170566 | CG | C | 1 | a0016 | 1 | HG03490.hp1 | frameshift_variant | HIGH | c.77delC | p.Pro26fs | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 384/815 | 77/420 | 26/139 | chrX | 8170566 | |||
| chrX:8170595 | C | T | 1 | a0012 | 1 | HG02486.hp1 | missense_variant | MODERATE | c.49G>A | p.Ala17Thr | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 356/815 | 49/420 | 17/139 | chrX | 8170595 | |||
| chrX:8170600 | G | A | 1 | a0012 | 1 | HG02486.hp1 | missense_variant | MODERATE | c.44C>T | p.Thr15Met | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 351/815 | 44/420 | 15/139 | chrX | 8170600 | |||
| chrX:8170600 | G | C | 7 | a0001a0013a0014others(4): Show | 30 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(27): Show |
missense_variant | MODERATE | c.44C>G | p.Thr15Arg | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 351/815 | 44/420 | 15/139 | chrX | 8170600 | |||
| chrX:8170600 | G | T | 4 | a0003a0006a0008others(1): Show | 27 | HG01167.hp1 HG02027.hp1 HG02055.hp1 others(24): Show |
missense_variant | MODERATE | c.44C>A | p.Thr15Lys | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 351/815 | 44/420 | 15/139 | chrX | 8170600 | |||
| chrX:8170609 | G | A | 1 | a0026 | 1 | NA18612.hp1 | missense_variant | MODERATE | c.35C>T | p.Ala12Val | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 342/815 | 35/420 | 12/139 | chrX | 8170609 | |||
| chrX:8170637 | G | A | 1 | a0027 | 1 | HG01261.hp1 | missense_variant | MODERATE | c.7C>T | p.Pro3Ser | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 314/815 | 7/420 | 3/139 | chrX | 8170637 |
| view | chr:pos | ref | alt | # # of chapid
|
chapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:8170047 | G | A | 2 | a0001c0026a0027c0034 | 2 | HG01261.hp1 HG03710.hp1 |
synonymous_variant | LOW | c.405C>T | p.Ser135Ser | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 712/815 | 405/420 | 135/139 | chrX | 8170047 | |||
| chrX:8170053 | A | G | 1 | a0003c0009 | 2 | HG01167.hp1 HG02965.hp1 |
synonymous_variant | LOW | c.399T>C | p.Pro133Pro | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 706/815 | 399/420 | 133/139 | chrX | 8170053 | |||
| chrX:8170065 | G | A | 1 | a0012c0032 | 1 | HG02486.hp1 | synonymous_variant | LOW | c.387C>T | p.Ala129Ala | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 694/815 | 387/420 | 129/139 | chrX | 8170065 | |||
| chrX:8170110 | C | T | 1 | a0006c0013 | 1 | HG02145.hp1 | synonymous_variant | LOW | c.342G>A | p.Leu114Leu | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 649/815 | 342/420 | 114/139 | chrX | 8170110 | |||
| chrX:8170119 | T | C | 33 | a0001c0002a0001c0026a0001c0028others(30): Show | 103 | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(100): Show |
synonymous_variant | LOW | c.333A>G | p.Glu111Glu | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 640/815 | 333/420 | 111/139 | chrX | 8170119 | |||
| chrX:8170146 | G | A | 1 | a0001c0028 | 1 | HG02698.hp1 | synonymous_variant | LOW | c.306C>T | p.Asp102Asp | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 613/815 | 306/420 | 102/139 | chrX | 8170146 | |||
| chrX:8170302 | G | A | 4 | a0003c0014a0005c0011a0010c0022others(1): Show | 5 | HG01256.hp1 HG01943.hp1 HG01952.hp1 others(2): Show |
synonymous_variant | LOW | c.150C>T | p.Arg50Arg | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 457/815 | 150/420 | 50/139 | chrX | 8170302 |
| view | chr:pos | ref | alt | # # of thapid:transcript level
|
thapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:8169980 | T | TG | 1 | a0002c0001t0014 | 1 | HG02074.hp1 | 3_prime_UTR_variant | MODIFIER | c.*51dupC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 51 | chrX | 8169980 | ||||||
| chrX:8169988 | A | AC | 1 | a0002c0001t0013 | 1 | NA18962.hp1 | 3_prime_UTR_variant | MODIFIER | c.*43dupG | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 43 | chrX | 8169988 | ||||||
| chrX:8169989 | C | T | 4 | a0005c0011t0004a0010c0022t0004a0019c0023t0012others(1): Show | 5 | HG01256.hp1 HG01943.hp1 HG01952.hp1 others(2): Show |
3_prime_UTR_variant | MODIFIER | c.*43G>A | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 43 | chrX | 8169989 | ||||||
| chrX:8169992 | C | T | 1 | a0019c0023t0012 | 1 | HG01943.hp1 | 3_prime_UTR_variant | MODIFIER | c.*40G>A | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 40 | chrX | 8169992 | ||||||
| chrX:8169998 | T | C | 1 | a0006c0005t0005 | 3 | HG02559.hp1 HG02717.hp1 NA20300.hp1 |
3_prime_UTR_variant | MODIFIER | c.*34A>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 34 | chrX | 8169998 | ||||||
| chrX:8170017 | CG | C | 1 | a0016c0031t0011 | 1 | HG03490.hp1 | 3_prime_UTR_variant | MODIFIER | c.*14delC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 3/3 | 14 | chrX | 8170017 | ||||||
| chrX:8170651 | A | AG | 1 | a0016c0031t0011 | 1 | HG03490.hp1 | 5_prime_UTR_variant | MODIFIER | c.-9dupC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 9 | chrX | 8170651 | ||||||
| chrX:8170674 | A | G | 29 | a0001c0002t0001a0001c0026t0001a0001c0028t0001others(26): Show | 84 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(81): Show |
5_prime_UTR_variant | MODIFIER | c.-31T>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 31 | chrX | 8170674 | ||||||
| chrX:8170709 | C | A | 38 | a0001c0002t0001a0001c0026t0001a0001c0028t0001others(35): Show | 101 | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(98): Show |
5_prime_UTR_variant | MODIFIER | c.-66G>T | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 66 | chrX | 8170709 | ||||||
| chrX:8170739 | C | T | 1 | a0023c0024t0009 | 1 | HG04115.hp1 | 5_prime_UTR_premature_start_codon_gain_variant | LOW | c.-96G>A | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | chrX | 8170739 | |||||||
| chrX:8170740 | GC | G | 1 | a0017c0016t0008 | 1 | HG04228.hp1 | 5_prime_UTR_variant | MODIFIER | c.-98delG | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 98 | chrX | 8170740 | ||||||
| chrX:8170776 | A | G | 1 | a0007c0007t0006 | 2 | HG02615.hp2 HG03579.hp1 |
5_prime_UTR_variant | MODIFIER | c.-133T>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/3 | 133 | chrX | 8170776 | ||||||
| chrX:8171155 | C | T | 39 | a0001c0002t0001a0001c0026t0001a0001c0028t0001others(36): Show | 102 | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(99): Show |
5_prime_UTR_variant | MODIFIER | c.-195G>A | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/3 | 512 | chrX | 8171155 | ||||||
| chrX:8171179 | A | G | 1 | a0002c0001t0007 | 1 | HG03453.hp2 | 5_prime_UTR_premature_start_codon_gain_variant | LOW | c.-219T>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/3 | chrX | 8171179 |
| view | chr:pos | ref | alt | # # of ghapid:genebody level
|
ghapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:8170384 | T | C | 16 | a0002c0001t0001g0004a0002c0001t0001g0037a0002c0001t0002g0005others(13): Show | 26 | HG00621.hp1 HG01256.hp1 HG01943.hp1 others(23): Show |
intron_variant | MODIFIER | c.103-35A>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170384 | |||||||
| chrX:8170408 | G | C | 22 | a0001c0002t0001g0001a0001c0002t0001g0015a0001c0002t0001g0039others(19): Show | 44 | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(41): Show |
intron_variant | MODIFIER | c.103-59C>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170408 | |||||||
| chrX:8170440 | T | TG | 1 | a0001c0002t0001g0054 | 1 | HG03831.hp1 | intron_variant | MODIFIER | c.103-92dupC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170440 | |||||||
| chrX:8170450 | GT | G | 1 | a0016c0031t0011g0049 | 1 | HG03490.hp1 | intron_variant | MODIFIER | c.102+91delA | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170450 | |||||||
| chrX:8170452 | T | TG | 1 | a0023c0024t0009g0029 | 1 | HG04115.hp1 | intron_variant | MODIFIER | c.102+89dupC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170452 | |||||||
| chrX:8170452 | TG | T | 1 | a0017c0016t0008g0020 | 1 | HG04228.hp1 | intron_variant | MODIFIER | c.102+89delC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170452 | |||||||
| chrX:8170461 | C | G | 57 | a0001c0002t0001g0001a0001c0002t0001g0015a0001c0002t0001g0039others(54): Show | 96 | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(93): Show |
intron_variant | MODIFIER | c.102+81G>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170461 | |||||||
| chrX:8170472 | C | G | 42 | a0001c0002t0001g0015a0001c0026t0001g0038a0002c0001t0001g0003others(39): Show | 74 | HG00323.hp1 HG00621.hp1 HG00639.hp2 others(71): Show |
intron_variant | MODIFIER | c.102+70G>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170472 | |||||||
| chrX:8170488 | T | C | 5 | a0004c0004t0003g0010a0004c0004t0003g0058a0004c0004t0003g0059others(2): Show | 7 | HG00639.hp1 HG00639.hp2 HG01358.hp1 others(4): Show |
intron_variant | MODIFIER | c.102+54A>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170488 | |||||||
| chrX:8170505 | A | AG | 2 | a0016c0031t0011g0049a0023c0024t0009g0029 | 2 | HG03490.hp1 HG04115.hp1 |
intron_variant | MODIFIER | c.102+36dupC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170505 | |||||||
| chrX:8170505 | AG | A | 1 | a0025c0015t0001g0030 | 1 | HG02523.hp1 | intron_variant | MODIFIER | c.102+36delC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170505 | |||||||
| chrX:8170518 | G | A | 1 | a0012c0032t0001g0040 | 1 | HG02486.hp1 | intron_variant | MODIFIER | c.102+24C>T | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 2/2 | chrX | 8170518 | |||||||
| chrX:8170795 | C | T | 2 | a0002c0001t0002g0005a0002c0001t0007g0019 | 4 | HG03453.hp2 NA18951.hp2 NA18966.hp1 others(1): Show |
splice_region_variant&intron_variant | LOW | c.-146-6G>A | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170795 | |||||||
| chrX:8170796 | G | A | 1 | a0009c0010t0002g0013 | 2 | HG02818.hp2 HG03516.hp2 |
splice_region_variant&intron_variant | LOW | c.-146-7C>T | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170796 | |||||||
| chrX:8170800 | AG | A | 1 | a0020c0021t0002g0023 | 1 | NA20805.hp1 | intron_variant | MODIFIER | c.-146-12delC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170800 | |||||||
| chrX:8170814 | C | T | 1 | a0011c0012t0001g0026 | 1 | NA18522.hp1 | intron_variant | MODIFIER | c.-146-25G>A | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170814 | |||||||
| chrX:8170822 | A | C | 2 | a0002c0001t0003g0063a0002c0001t0007g0019 | 2 | HG03041.hp2 HG03453.hp2 |
intron_variant | MODIFIER | c.-146-33T>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170822 | |||||||
| chrX:8170850 | C | A | 29 | a0001c0002t0001g0001a0001c0002t0001g0015a0001c0002t0001g0039others(26): Show | 53 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(50): Show |
intron_variant | MODIFIER | c.-146-61G>T | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170850 | |||||||
| chrX:8170856 | C | CG | 3 | a0004c0004t0003g0060a0004c0004t0003g0061a0005c0006t0002g0021 | 3 | HG01099.hp1 HG02056.hp1 HG03491.hp2 |
intron_variant | MODIFIER | c.-146-68dupC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170856 | |||||||
| chrX:8170856 | C | CGG | 1 | a0004c0004t0003g0059 | 1 | HG00639.hp2 | intron_variant | MODIFIER | c.-146-69_-146-68dup others(2): Show |
VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170856 | |||||||
| chrX:8170856 | CG | C | 4 | a0007c0007t0006g0025a0016c0031t0011g0049a0017c0016t0008g0020others(1): Show | 4 | HG03490.hp1 HG03579.hp1 HG04228.hp1 others(1): Show |
intron_variant | MODIFIER | c.-146-68delC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170856 | |||||||
| chrX:8170856 | CGG | C | 44 | a0001c0002t0001g0001a0001c0002t0001g0015a0001c0002t0001g0039others(41): Show | 88 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(85): Show |
intron_variant | MODIFIER | c.-146-69_-146-68del others(2): Show |
VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170856 | |||||||
| chrX:8170856 | CGGG | C | 2 | a0002c0001t0002g0005a0002c0001t0007g0019 | 4 | HG03453.hp2 NA18951.hp2 NA18966.hp1 others(1): Show |
intron_variant | MODIFIER | c.-146-70_-146-68del others(3): Show |
VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170856 | |||||||
| chrX:8170859 | G | A | 5 | a0003c0003t0001g0002a0003c0003t0001g0047a0003c0009t0001g0017others(2): Show | 16 | HG00733.hp1 HG01167.hp1 HG02027.hp1 others(13): Show |
intron_variant | MODIFIER | c.-146-70C>T | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170859 | |||||||
| chrX:8170866 | G | A | 45 | a0001c0002t0001g0001a0001c0002t0001g0015a0001c0002t0001g0039others(42): Show | 88 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(85): Show |
intron_variant | MODIFIER | c.-146-77C>T | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170866 | |||||||
| chrX:8170909 | AG | A | 1 | a0017c0016t0008g0020 | 1 | HG04228.hp1 | intron_variant | MODIFIER | c.-146-121delC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170909 | |||||||
| chrX:8170918 | TG | T | 1 | a0016c0031t0011g0049 | 1 | HG03490.hp1 | intron_variant | MODIFIER | c.-146-130delC | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170918 | |||||||
| chrX:8170959 | A | G | 4 | a0005c0006t0002g0011a0005c0006t0002g0021a0007c0007t0002g0022others(1): Show | 5 | HG00323.hp1 HG02683.hp1 HG03491.hp2 others(2): Show |
intron_variant | MODIFIER | c.-147+148T>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170959 | |||||||
| chrX:8170967 | TA | T | 1 | a0017c0016t0008g0020 | 1 | HG04228.hp1 | intron_variant | MODIFIER | c.-147+139delT | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170967 | |||||||
| chrX:8170972 | TC | T | 1 | a0016c0031t0011g0049 | 1 | HG03490.hp1 | intron_variant | MODIFIER | c.-147+134delG | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170972 | |||||||
| chrX:8170977 | A | G | 6 | a0001c0002t0001g0050a0002c0001t0002g0005a0002c0001t0007g0019others(3): Show | 8 | HG02293.hp1 HG02886.hp2 HG03453.hp2 others(5): Show |
intron_variant | MODIFIER | c.-147+130T>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8170977 | |||||||
| chrX:8171015 | T | C | 1 | a0005c0006t0002g0043 | 1 | HG03486.hp2 | intron_variant | MODIFIER | c.-147+92A>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8171015 | |||||||
| chrX:8171030 | T | TC | 1 | a0014c0029t0001g0057 | 1 | HG01934.hp1 | intron_variant | MODIFIER | c.-147+76dupG | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8171030 | |||||||
| chrX:8171063 | T | C | 10 | a0003c0003t0001g0002a0003c0003t0001g0008a0003c0003t0001g0047others(7): Show | 24 | HG00733.hp1 HG01167.hp1 HG01256.hp1 others(21): Show |
intron_variant | MODIFIER | c.-147+44A>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8171063 | |||||||
| chrX:8171064 | TC | T | 1 | a0016c0031t0011g0049 | 1 | HG03490.hp1 | intron_variant | MODIFIER | c.-147+42delG | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8171064 | |||||||
| chrX:8171082 | A | G | 1 | a0002c0001t0007g0019 | 1 | HG03453.hp2 | intron_variant | MODIFIER | c.-147+25T>C | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8171082 | |||||||
| chrX:8171106 | T | C | 11 | a0001c0002t0001g0001a0001c0002t0001g0050a0001c0002t0001g0052others(8): Show | 26 | HG00280.hp1 HG00323.hp2 HG00609.hp1 others(23): Show |
splice_donor_variant&intron_variant | HIGH | c.-147+1A>G | VCX2 | ENSG00000177504.10 | transcript | ENST00000317103.5 | protein_coding | 1/2 | chrX | 8171106 |