Joint Open Genome and Omics Platform (JoGo)

Search Haplotype QTL Database

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, BRCA1.

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Hitcount

Minimum number of studies with hits (≥).

Concordance_ratio

Concordance ratio threshold (≥). Accepts decimal values (e.g., 0.5, 1.0).

Min of -log10(P-values)

Required -log10(P) threshold (≥) among all studies.

Max of -log10(P-values)

Required -log10(P) threshold (≥) at least one study.

Total Count Sum (>=)

Sum of counts for pair1 + pair2 (≥).

Haplotypeid1

Enter haplotype ID (or pair like a01-a02).

Haplotypeid2

Enter haplotype ID (or pair like a01-a02).

Qtltarget

Comma-separated keywords; any match (OR); LCL731,LCL432,LCLJP87IFN.

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Please provide at least one search criterion: genename, regionname, haplotypeid1, haplotypeid2, min -log10(p-values), or max -log10(p-values).