Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
A1BG 192 55 60 47 1 0 0.744 0.213 0.233 0.182 0.004 0.000 chr19 58340183 58358492
A1CF 168 56 70 38 0 0 0.651 0.217 0.271 0.147 0.000 0.000 chr10 50794409 50890627
A2ML1 183 58 51 34 0 0 0.709 0.225 0.198 0.132 0.000 0.000 chr12 8817621 8881787
A2M 165 48 71 43 0 0 0.640 0.186 0.275 0.167 0.000 0.000 chr12 9062708 9120919
A3GALT2 208 73 45 28 0 0 0.806 0.283 0.174 0.109 0.000 0.000 chr1 33301766 33326098
A4GALT 202 67 45 29 0 0 0.783 0.260 0.174 0.112 0.000 0.000 chr22 42687121 42725870
A4GNT 198 71 60 34 0 0 0.767 0.275 0.233 0.132 0.000 0.000 chr3 138118713 138137390
AAAS 164 42 82 54 0 0 0.636 0.163 0.318 0.209 0.000 0.000 chr12 53302460 53326610
AACS 181 58 46 27 0 0 0.702 0.225 0.178 0.105 0.000 0.000 chr12 125060435 125148316
AADACL2 213 77 39 26 0 0 0.826 0.298 0.151 0.101 0.000 0.000 chr3 151728927 151766339
AADACL3 215 76 37 24 0 0 0.833 0.295 0.143 0.093 0.000 0.000 chr1 12711110 12733760
AADACL4 154 49 84 44 0 0 0.597 0.190 0.326 0.171 0.000 0.000 chr1 12639085 12672076
AADAC 219 81 36 21 0 0 0.849 0.314 0.140 0.081 0.000 0.000 chr3 151809116 151833488
AADAT 188 61 58 34 0 0 0.729 0.236 0.225 0.132 0.000 0.000 chr4 170055222 170094956
AAGAB 189 72 61 29 1 1 0.733 0.279 0.236 0.112 0.004 0.004 chr15 67195667 67259661
AAK1 148 50 86 46 0 0 0.574 0.194 0.333 0.178 0.000 0.000 chr2 69452997 69648739
AAMDC 190 70 57 26 0 0 0.736 0.271 0.221 0.101 0.000 0.000 chr11 77816144 77877352
AAMP 199 66 57 37 1 1 0.771 0.256 0.221 0.143 0.004 0.004 chr2 218259129 218275137
AANAT 212 73 41 27 0 0 0.822 0.283 0.159 0.105 0.000 0.000 chr17 76462603 76475117
AAR2 148 45 98 51 0 0 0.574 0.174 0.380 0.198 0.000 0.000 chr20 36231478 36261933
AARD 220 81 33 21 1 0 0.853 0.314 0.128 0.081 0.004 0.000 chr8 116933207 116949487
AARS1 180 56 66 38 0 0 0.698 0.217 0.256 0.147 0.000 0.000 chr16 70247298 70294506
AARS2 197 70 56 30 0 0 0.764 0.271 0.217 0.116 0.000 0.000 chr6 44293731 44318347
AARSD1 161 44 95 59 0 0 0.624 0.171 0.368 0.229 0.000 0.000 chr17 42945526 42969454
AASDHPPT 201 81 54 22 0 0 0.779 0.314 0.209 0.085 0.000 0.000 chr11 106072662 106103695
AASDH 190 74 57 25 0 0 0.736 0.287 0.221 0.097 0.000 0.000 chr4 56333290 56392491
AASS 191 66 57 34 0 0 0.740 0.256 0.221 0.132 0.000 0.000 chr7 122068549 122149249
AATF 122 28 99 54 0 0 0.473 0.109 0.384 0.209 0.000 0.000 chr17 36943954 37061871
AATK 183 51 49 33 0 0 0.709 0.198 0.190 0.128 0.000 0.000 chr17 81112295 81171221
ABAT 180 54 46 31 0 0 0.698 0.209 0.178 0.120 0.000 0.000 chr16 8669617 8789570
ABCA10 173 59 62 38 0 0 0.671 0.229 0.240 0.147 0.000 0.000 chr17 69143007 69233824
ABCA12 98 16 99 58 0 0 0.380 0.062 0.384 0.225 0.000 0.000 chr2 214926542 215143626
ABCA13 88 23 68 43 0 0 0.341 0.089 0.264 0.167 0.000 0.000 chr7 48166458 48652497
ABCA1 158 41 50 33 0 0 0.612 0.159 0.194 0.128 0.000 0.000 chr9 104776006 104933155
ABCA2 159 37 79 53 0 0 0.616 0.143 0.306 0.205 0.000 0.000 chr9 137002234 137033237
ABCA3 125 23 94 61 0 0 0.484 0.089 0.364 0.236 0.000 0.000 chr16 2270881 2345728
ABCA4 152 43 63 39 0 0 0.589 0.167 0.244 0.151 0.000 0.000 chr1 93987834 94126148
ABCA5 174 55 68 43 0 0 0.674 0.213 0.264 0.167 0.000 0.000 chr17 69239311 69332133
ABCA6 162 53 79 44 0 0 0.628 0.205 0.306 0.171 0.000 0.000 chr17 69073702 69146895
ABCA7 14 4 77 20 0 0 0.054 0.016 0.298 0.078 0.000 0.000 chr19 1035107 1070572
ABCA8 136 47 82 36 0 0 0.527 0.182 0.318 0.140 0.000 0.000 chr17 68862289 68960392
ABCA9 155 48 82 47 0 0 0.601 0.186 0.318 0.182 0.000 0.000 chr17 68969488 69065927
ABCB10 141 27 101 68 0 0 0.547 0.105 0.391 0.264 0.000 0.000 chr1 229511582 229563707
ABCB11 152 46 76 44 0 0 0.589 0.178 0.295 0.171 0.000 0.000 chr2 168915781 169036324
ABCB1 175 49 54 36 0 0 0.678 0.190 0.209 0.140 0.000 0.000 chr7 87498017 87605884
ABCB4 144 48 90 46 0 0 0.558 0.186 0.349 0.178 0.000 0.000 chr7 87396696 87480680
ABCB5 179 54 46 31 0 0 0.694 0.209 0.178 0.120 0.000 0.000 chr7 20610667 20762008
ABCB6 178 49 74 51 2 1 0.690 0.190 0.287 0.198 0.008 0.004 chr2 219204772 219223958
ABCB7 52 1 196 98 0 0 0.202 0.004 0.760 0.380 0.000 0.000 chrX 75046048 75161283
ABCB8 199 64 56 38 0 0 0.771 0.248 0.217 0.147 0.000 0.000 chr7 151023450 151052782