Joint Open Genome and Omics Platform (JoGo)

Search by Splice

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome name (e.g., chr11).

Splicetype

Type of splice site (donor or acceptor).

Reported

Yes: This position is a confirmed splice junction in this transcript. No: This position is a predicted splice candidate, but not used in this transcript.

Haplotypeclass

Haplotype classification level (A, C, T, G, or combinations).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

Pos

Exact genomic position (GRCh38).

Max_splice_score

Maximum splice score threshold.

Min_splice_score

Minimum splice score threshold.

Diff

Score difference threshold (max - min).

Exonnumber

Exon number in the transcript.

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Please provide at least one search criterion: regionname, genename, chr+pos, chr+start, chr+end, splice score range, or diff value.

regionname	pos	# strand	# exonnumber	max max value among all matched hapids's median splice score	min min value among all matched hapids's median splice score	diff difference between max to min splice score	type	max_groupname_list	max_hap_list	min_groupname_list	min_hap_list	symbol	chr	start	end

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