Joint Open Genome and Omics Platform (JoGo)

Search by Splice Detail Information

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome name (e.g., chr11).

Splicetype

Type of splice site (donor or acceptor).

Reported

Yes: This position is a confirmed splice junction in this transcript. No: This position is a predicted splice candidate, but not used in this transcript.

Haplotypeclass

Group by all or haplotype level (A, AC, ACT, ACTG) of the transcript.

Haplotypeid

Search for specific haplotype IDs (e.g., a0001c0002, a1c2).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

Pos

Exact genomic position (GRCh38).

Median

Median splice score threshold (minimum).

Diff

Score difference threshold (max - min).

Exonnumber

Exon number in the transcript. 0 means predicted (but not used in the transcript).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

Please provide at least one search criterion: regionname, genename, chr+pos, chr+start, chr+end, median, diff, splicetype, or haplotypeid.

regionname	pos	# strand	# exonnumber	max max value among all matched hapids's median splice score	median median value among all matched hapids's splice score	min min value among all matched hapids's median splice score	diff difference between max to min splice score	type	haplotypeid	max_hap_list	min_hap_list	symbol	chr	start	end

Search by Splice Detail Information

Search

Search Results (Total: 0 hits)