Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
MS4A12 215 78 40 24 0 0 0.833 0.302 0.155 0.093 0.000 0.000 chr11 60487778 60512430
MS4A13 210 80 47 25 0 0 0.814 0.310 0.182 0.097 0.000 0.000 chr11 60510392 60547721
MS4A14 213 84 40 18 0 0 0.826 0.326 0.155 0.070 0.000 0.000 chr11 60391459 60422756
MS4A15 224 80 30 21 0 0 0.868 0.310 0.116 0.081 0.000 0.000 chr11 60751867 60781733
MS4A18 207 77 46 25 0 0 0.802 0.298 0.178 0.097 0.000 0.000 chr11 60719720 60750028
MS4A1 222 89 34 14 0 0 0.860 0.345 0.132 0.054 0.000 0.000 chr11 60450847 60475752
MS4A2 208 73 50 32 0 0 0.806 0.283 0.194 0.124 0.000 0.000 chr11 60083664 60103467
MS4A3 203 76 46 26 0 0 0.787 0.295 0.178 0.101 0.000 0.000 chr11 60051665 60076115
MS4A4A 214 85 37 17 0 0 0.829 0.329 0.143 0.066 0.000 0.000 chr11 60275666 60313970
MS4A4E 204 78 45 22 0 0 0.791 0.302 0.174 0.085 0.000 0.000 chr11 60195270 60248137
MS4A5 230 95 25 8 0 0 0.891 0.368 0.097 0.031 0.000 0.000 chr11 60424572 60452792
MS4A6A 182 65 76 40 0 0 0.705 0.252 0.295 0.155 0.000 0.000 chr11 60167497 60188083
MS4A6E 224 84 30 17 0 0 0.868 0.326 0.116 0.066 0.000 0.000 chr11 60322255 60346341
MS4A7 206 78 48 25 0 0 0.798 0.302 0.186 0.097 0.000 0.000 chr11 60373532 60400948
MS4A8 200 75 53 28 0 0 0.775 0.291 0.205 0.109 0.000 0.000 chr11 60694612 60720807
MSANTD1 216 76 40 27 0 0 0.837 0.295 0.155 0.105 0.000 0.000 chr4 3244159 3261613
MSANTD2 161 48 70 40 0 0 0.624 0.186 0.271 0.155 0.000 0.000 chr11 124761498 124805406
MSANTD3 163 45 80 52 0 0 0.632 0.174 0.310 0.202 0.000 0.000 chr9 100422143 100456734
MSANTD4 191 64 62 36 1 1 0.740 0.248 0.240 0.140 0.004 0.004 chr11 106002899 106027240
MSANTD5 214 74 40 29 1 0 0.829 0.287 0.155 0.112 0.004 0.000 chr5 178689572 178702761
MSANTD7 201 71 56 33 0 0 0.779 0.275 0.217 0.128 0.000 0.000 chr10 14833306 14851999
MSC 235 93 22 11 0 0 0.911 0.360 0.085 0.043 0.000 0.000 chr8 71836560 71849412
MSGN1 173 47 83 57 0 0 0.671 0.182 0.322 0.221 0.000 0.000 chr2 17811460 17822798
MSH2 184 62 57 32 0 0 0.713 0.240 0.221 0.124 0.000 0.000 chr2 47398156 47488223
MSH3 180 56 53 34 0 0 0.698 0.217 0.205 0.132 0.000 0.000 chr5 80649652 80881815
MSH4 165 47 78 48 0 0 0.640 0.182 0.302 0.186 0.000 0.000 chr1 75791882 75918242
MSH5 198 61 54 38 0 0 0.767 0.236 0.209 0.147 0.000 0.000 chr6 31735005 31767676
MSH6 194 65 51 29 1 1 0.752 0.252 0.198 0.112 0.004 0.004 chr2 47778145 47811953
MSI1 173 50 73 46 0 0 0.671 0.194 0.283 0.178 0.000 0.000 chr12 120336330 120374164
MSI2 83 15 81 46 0 0 0.322 0.058 0.314 0.178 0.000 0.000 chr17 57251523 57689689
MSL1 177 64 72 36 0 0 0.686 0.248 0.279 0.140 0.000 0.000 chr17 40116971 40141917
MSL2 154 32 88 59 0 0 0.597 0.124 0.341 0.229 0.000 0.000 chr3 136143917 136201335
MSL3 83 20 172 82 0 0 0.322 0.078 0.667 0.318 0.000 0.000 chrX 11753237 11780772
MSLN 193 56 47 36 0 0 0.748 0.217 0.182 0.140 0.000 0.000 chr16 755734 773862
MSMB 222 89 32 14 1 0 0.860 0.345 0.124 0.054 0.004 0.000 chr10 46028313 46051269
MSMO1 230 83 27 22 1 0 0.891 0.322 0.105 0.085 0.004 0.000 chr4 165322669 165348164
MSMP 211 82 44 20 0 0 0.818 0.318 0.171 0.078 0.000 0.000 chr9 35747990 35759276
MSN 21 0 220 94 0 0 0.081 0.000 0.853 0.364 0.000 0.000 chrX 65662654 65746931
MSR1 164 48 59 38 0 0 0.636 0.186 0.229 0.147 0.000 0.000 chr8 16102881 16197651
MSRA 142 36 61 35 0 0 0.550 0.140 0.236 0.136 0.000 0.000 chr8 10049292 10433891
MSRB1 223 75 33 28 0 0 0.864 0.291 0.128 0.109 0.000 0.000 chr16 1933229 1948199
MSRB2 220 83 33 18 0 0 0.853 0.322 0.128 0.070 0.000 0.000 chr10 23090579 23127013
MSRB3 155 44 64 37 0 0 0.601 0.171 0.248 0.143 0.000 0.000 chr12 65273683 65471907
MSS51 157 55 97 47 0 0 0.609 0.213 0.376 0.182 0.000 0.000 chr10 73418579 73438561
MST1R 148 33 99 65 0 0 0.574 0.128 0.384 0.252 0.000 0.000 chr3 49882002 49908873
MST1 159 42 88 55 0 0 0.616 0.163 0.341 0.213 0.000 0.000 chr3 49678947 49694474
MSTN 191 65 63 38 0 0 0.740 0.252 0.244 0.147 0.000 0.000 chr2 190050700 190067729
MSTO1 198 65 54 38 0 0 0.767 0.252 0.209 0.147 0.000 0.000 chr1 155605218 155619951
MSX1 219 76 39 29 0 0 0.849 0.295 0.151 0.112 0.000 0.000 chr4 4854665 4868936
MSX2 177 55 77 50 2 0 0.686 0.213 0.298 0.194 0.008 0.000 chr5 174719582 174735896