Joint Open Genome and Omics Platform (JoGo)

Genic Haplotype Summary

Genename

Examples: ALDH2, BRCA1.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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Genename	ALL BOTH # of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	JPT BOTH # of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	ALL SINGLE # of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	ALL BOTH # of samples with two haploids were completely assembled/# of total samples	JPT BOTH # of JPT samples with two haploids were completely assembled/# of total JPT samples	ALL SINGLE # of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	Chr	Start	End
ABCB9	135	30	109	68	0	0.523	0.116	0.422	0.264	0.000	chr12	122923992	122971463
ABCC10	170	47	81	52	0	0.659	0.182	0.314	0.202	0.000	chr6	43422541	43455427
ABCC11	78	1	153	94	0	0.302	0.004	0.593	0.364	0.000	chr16	48160773	48252539
ABCC12	66	1	145	80	0	0.256	0.004	0.562	0.310	0.000	chr16	48075882	48160993
ABCC1	124	23	74	45	0	0.481	0.089	0.287	0.174	0.000	chr16	15944616	16148053
ABCC2	167	55	67	36	0	0.647	0.213	0.260	0.140	0.000	chr10	99777640	99857594
ABCC3	170	56	70	38	0	0.659	0.217	0.271	0.147	0.000	chr17	50629881	50697253
ABCC4	123	32	75	43	0	0.477	0.124	0.291	0.167	0.000	chr13	95014835	95306451
ABCC5	188	63	57	35	0	0.729	0.244	0.221	0.136	0.000	chr3	183914934	184022884
ABCC6	178	53	53	34	0	0.690	0.205	0.205	0.132	0.000	chr16	16144565	16228494
ABCC8	164	40	66	48	0	0.636	0.155	0.256	0.186	0.000	chr11	17387885	17481845
ABCC9	105	23	112	63	0	0.407	0.089	0.434	0.244	0.000	chr12	21792389	21946426
ABCD1	78	15	174	85	0	0.302	0.058	0.674	0.329	0.000	chrX	153719856	153749755
ABCD2	169	60	68	36	0	0.655	0.233	0.264	0.140	0.000	chr12	39545033	39624803
ABCD3	180	72	69	27	0	0.698	0.279	0.267	0.105	0.000	chr1	94413389	94523663
ABCD4	191	64	61	37	0	0.740	0.248	0.236	0.143	0.000	chr14	74280269	74307934
ABCE1	129	31	111	65	0	0.500	0.120	0.430	0.252	0.000	chr4	145093311	145134524
ABCF1	207	71	47	31	0	0.802	0.275	0.182	0.120	0.000	chr6	30566442	30596522
ABCF2	194	60	61	42	0	0.752	0.233	0.236	0.163	0.000	chr7	151206484	151232205
ABCF3	207	72	45	28	0	0.802	0.279	0.174	0.109	0.000	chr3	184181199	184199005
ABCG1	176	42	50	40	0	0.682	0.163	0.194	0.155	0.000	chr21	42214140	42302244
ABCG2	174	52	65	40	0	0.674	0.202	0.252	0.155	0.000	chr4	88085269	88163639
ABCG4	193	59	59	40	0	0.748	0.229	0.229	0.155	0.000	chr11	119144052	119167653
ABCG5	164	35	71	53	0	0.636	0.136	0.275	0.205	0.000	chr2	43807472	43843839
ABCG8	158	36	72	49	0	0.612	0.140	0.279	0.190	0.000	chr2	43833971	43887988
ABHD10	211	73	43	28	0	0.818	0.283	0.167	0.109	0.000	chr3	111974026	111998368
ABHD11	213	73	42	29	0	0.826	0.283	0.163	0.112	0.000	chr7	73731094	73743802
ABHD12B	187	61	52	30	0	0.725	0.236	0.202	0.116	0.000	chr14	50867053	50909970
ABHD12	157	34	80	58	0	0.609	0.132	0.310	0.225	0.000	chr20	25295214	25395835
ABHD13	194	66	59	37	0	0.752	0.256	0.229	0.143	0.000	chr13	108213392	108239243
ABHD14A	171	50	84	53	0	0.663	0.194	0.326	0.205	0.000	chr3	51970064	51986196
ABHD14B	161	42	87	54	1	0.624	0.163	0.337	0.209	0.004	chr3	51963515	51979049
ABHD15	208	65	48	39	1	0.806	0.252	0.186	0.151	0.004	chr17	29555547	29572037
ABHD16A	208	68	43	30	0	0.806	0.264	0.167	0.116	0.000	chr6	31681955	31708324
ABHD16B	198	59	57	43	0	0.767	0.229	0.221	0.167	0.000	chr20	63856498	63867988
ABHD17A	207	72	43	28	0	0.802	0.279	0.167	0.109	0.000	chr19	1871810	1890496
ABHD17B	92	17	142	77	0	0.357	0.066	0.550	0.298	0.000	chr9	71860152	71916193
ABHD17C	179	58	67	39	0	0.694	0.225	0.260	0.151	0.000	chr15	80690310	80760621
ABHD18	171	61	72	36	0	0.663	0.236	0.279	0.140	0.000	chr4	127960406	128044953
ABHD1	199	68	54	32	0	0.771	0.264	0.209	0.124	0.000	chr2	27118815	27135812
ABHD2	116	25	94	52	0	0.450	0.097	0.364	0.202	0.000	chr15	89083456	89207355
ABHD3	151	41	89	53	0	0.585	0.159	0.345	0.205	0.000	chr18	21645901	21709774
ABHD4	211	68	40	30	0	0.818	0.264	0.155	0.116	0.000	chr14	22593300	22617963
ABHD5	142	44	103	55	0	0.550	0.171	0.399	0.213	0.000	chr3	43685938	43727725
ABHD6	150	32	88	57	0	0.581	0.124	0.341	0.221	0.000	chr3	58232792	58299734
ABHD8	192	59	62	44	0	0.744	0.229	0.240	0.171	0.000	chr19	17287131	17308425
ABI1	178	67	64	32	0	0.690	0.260	0.248	0.124	0.000	chr10	26741596	26865958
ABI2	159	53	73	39	0	0.616	0.205	0.283	0.151	0.000	chr2	203323394	203437169
ABI3BP	118	32	68	42	0	0.457	0.124	0.264	0.163	0.000	chr3	100744156	100998421
ABI3	223	78	31	24	1	0.864	0.302	0.120	0.093	0.004	chr17	49205707	49228225

Genic Haplotype Summary

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