Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
AFF1 146 37 77 43 0 0 0.566 0.143 0.298 0.167 0.000 0.000 chr4 86930011 87146039
AFF2 23 0 197 85 0 0 0.089 0.000 0.764 0.329 0.000 0.000 chrX 148495617 149005663
AFF3 49 1 86 51 0 0 0.190 0.004 0.333 0.198 0.000 0.000 chr2 99540419 100147590
AFF4 195 74 48 26 0 0 0.756 0.287 0.186 0.101 0.000 0.000 chr5 132870395 132968634
AFG1L 0 0 30 8 0 0 0.000 0.000 0.116 0.031 0.000 0.000 chr6 108290054 108531001
AFG3L2 187 57 59 39 0 0 0.725 0.221 0.229 0.151 0.000 0.000 chr18 12323944 12382227
AFMID 222 74 28 24 0 0 0.860 0.287 0.109 0.093 0.000 0.000 chr17 78182362 78212702
AFM 183 62 69 39 0 0 0.709 0.240 0.267 0.151 0.000 0.000 chr4 73476745 73509001
AFP 194 62 58 38 0 0 0.752 0.240 0.225 0.147 0.000 0.000 chr4 73431221 73461174
AFTPH 185 73 57 24 0 0 0.717 0.283 0.221 0.093 0.000 0.000 chr2 64519328 64598005
AGAP1 49 1 94 48 0 0 0.190 0.004 0.364 0.186 0.000 0.000 chr2 235489043 236136793
AGAP2 190 54 63 48 0 0 0.736 0.209 0.244 0.186 0.000 0.000 chr12 57720197 57743742
AGAP3 176 50 62 42 0 0 0.682 0.194 0.240 0.163 0.000 0.000 chr7 151081475 151149434
AGAP4 190 61 62 39 0 0 0.736 0.236 0.240 0.151 0.000 0.000 chr10 45820594 45852500
AGAP5 183 68 59 27 1 1 0.709 0.264 0.229 0.105 0.004 0.004 chr10 73669295 73703109
AGAP6 202 71 47 28 0 0 0.783 0.275 0.182 0.109 0.000 0.000 chr10 49983406 50015499
AGAP9 102 23 116 58 2 0 0.395 0.089 0.450 0.225 0.008 0.000 chr10 47496854 47528638
AGA 220 79 33 21 1 1 0.853 0.306 0.128 0.081 0.004 0.004 chr4 177425774 177447437
AGBL1 66 6 75 43 0 0 0.256 0.023 0.291 0.167 0.000 0.000 chr15 86074871 86921156
AGBL2 177 61 68 37 0 0 0.686 0.236 0.264 0.143 0.000 0.000 chr11 47654591 47720369
AGBL3 159 49 83 48 0 0 0.616 0.190 0.322 0.186 0.000 0.000 chr7 134981508 135140778
AGBL4 52 9 103 49 0 0 0.202 0.035 0.399 0.190 0.000 0.000 chr1 48527854 50028954
AGBL5 166 45 84 53 0 0 0.643 0.174 0.326 0.205 0.000 0.000 chr2 27046668 27075618
AGER 230 85 25 17 1 1 0.891 0.329 0.097 0.066 0.004 0.004 chr6 32175969 32189253
AGFG1 163 51 72 41 0 0 0.632 0.198 0.279 0.159 0.000 0.000 chr2 227467156 227566217
AGFG2 122 31 115 61 0 0 0.473 0.120 0.446 0.236 0.000 0.000 chr7 100534203 100573220
AGGF1 218 78 32 23 0 0 0.845 0.302 0.124 0.089 0.000 0.000 chr5 77025404 77070234
AGK 136 42 97 48 0 0 0.527 0.163 0.376 0.186 0.000 0.000 chr7 141546410 141660244
AGL 158 51 73 35 0 0 0.612 0.198 0.283 0.136 0.000 0.000 chr1 99845361 99929020
AGMAT 194 64 60 37 0 0 0.752 0.248 0.233 0.143 0.000 0.000 chr1 15566699 15590051
AGMO 117 14 68 46 0 0 0.453 0.054 0.264 0.178 0.000 0.000 chr7 15195317 15567015
AGO1 138 38 101 55 0 0 0.535 0.147 0.391 0.213 0.000 0.000 chr1 35878209 35935532
AGO2 168 45 57 39 0 0 0.651 0.174 0.221 0.151 0.000 0.000 chr8 140515156 140640633
AGO3 128 40 106 56 0 0 0.496 0.155 0.411 0.217 0.000 0.000 chr1 35926105 36077500
AGO4 134 42 104 54 0 0 0.519 0.163 0.403 0.209 0.000 0.000 chr1 35803016 35862890
AGPAT1 222 81 33 21 1 1 0.860 0.314 0.128 0.081 0.004 0.004 chr6 32163212 32181084
AGPAT2 186 54 64 43 0 0 0.721 0.209 0.248 0.167 0.000 0.000 chr9 136668143 136692457
AGPAT3 170 40 51 40 0 0 0.659 0.155 0.198 0.155 0.000 0.000 chr21 43860223 43992592
AGPAT4 131 27 72 51 0 0 0.508 0.105 0.279 0.198 0.000 0.000 chr6 161124967 161279061
AGPAT5 201 70 41 25 0 0 0.779 0.271 0.159 0.097 0.000 0.000 chr8 6703642 6766503
AGPS 128 45 109 54 0 0 0.496 0.174 0.422 0.209 0.000 0.000 chr2 177387773 177548834
AGR2 229 89 27 14 1 1 0.888 0.345 0.105 0.054 0.004 0.004 chr7 16786811 16809999
AGR3 228 83 26 18 0 0 0.884 0.322 0.101 0.070 0.000 0.000 chr7 16854412 16886983
AGRN 104 24 112 53 0 0 0.403 0.093 0.434 0.205 0.000 0.000 chr1 1015120 1061116
AGRP 127 32 127 70 1 0 0.492 0.124 0.492 0.271 0.004 0.000 chr16 67477571 67488547
AGTPBP1 150 39 82 52 0 0 0.581 0.151 0.318 0.202 0.000 0.000 chr9 85541539 85746954
AGTR1 174 54 65 38 0 0 0.674 0.209 0.252 0.147 0.000 0.000 chr3 148692903 148748003
AGTR2 104 37 149 66 2 0 0.403 0.143 0.578 0.256 0.008 0.000 chrX 116165744 116179974
AGTRAP 209 69 48 35 0 0 0.810 0.267 0.186 0.136 0.000 0.000 chr1 11731136 11755769
AGT 227 83 31 22 0 0 0.880 0.322 0.120 0.085 0.000 0.000 chr1 230697523 230719122