Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
MT1A 223 78 31 23 0 0 0.864 0.302 0.120 0.089 0.000 0.000 chr16 56633666 56645087
MT1B 227 84 29 19 1 1 0.880 0.326 0.112 0.074 0.004 0.004 chr16 56646886 56658204
MT1E 228 79 30 26 0 0 0.884 0.306 0.116 0.101 0.000 0.000 chr16 56620781 56632112
MT1F 230 86 27 18 1 1 0.891 0.333 0.105 0.070 0.004 0.004 chr16 56652959 56664303
MT1G 234 88 22 15 0 0 0.907 0.341 0.085 0.058 0.000 0.000 chr16 56661730 56673065
MT1HL1 233 87 21 14 1 1 0.903 0.337 0.081 0.054 0.004 0.004 chr1 236999103 237009441
MT1H 224 82 31 20 0 0 0.868 0.318 0.120 0.078 0.000 0.000 chr16 56664814 56676129
MT1M 222 78 36 27 0 0 0.860 0.302 0.140 0.105 0.000 0.000 chr16 56627659 56638981
MT1X 224 88 33 16 1 1 0.868 0.341 0.128 0.062 0.004 0.004 chr16 56677470 56689196
MT2A 229 87 28 18 0 0 0.888 0.337 0.109 0.070 0.000 0.000 chr16 56603584 56614497
MT3 218 86 39 19 0 0 0.845 0.333 0.151 0.074 0.000 0.000 chr16 56584528 56596085
MT4 213 80 42 23 0 0 0.826 0.310 0.163 0.089 0.000 0.000 chr16 56560073 56573957
MTA1 151 32 78 47 0 0 0.585 0.124 0.302 0.182 0.000 0.000 chr14 105414827 105475729
MTA2 180 62 73 39 0 0 0.698 0.240 0.283 0.151 0.000 0.000 chr11 62588214 62606865
MTA3 155 37 68 45 0 0 0.601 0.143 0.264 0.174 0.000 0.000 chr2 42563632 42761946
MTAP 190 68 53 26 0 0 0.736 0.264 0.205 0.101 0.000 0.000 chr9 21797636 21872081
MTARC1 208 70 43 29 0 0 0.806 0.271 0.167 0.112 0.000 0.000 chr1 220781913 220824659
MTARC2 198 75 48 21 0 0 0.767 0.291 0.186 0.081 0.000 0.000 chr1 220743322 220789815
MTBP 175 59 66 35 0 0 0.678 0.229 0.256 0.136 0.000 0.000 chr8 120440419 120528636
MTCH1 206 72 43 26 0 0 0.798 0.279 0.167 0.101 0.000 0.000 chr6 36963141 36991196
MTCH2 184 65 61 34 0 0 0.713 0.252 0.236 0.132 0.000 0.000 chr11 47612317 47647559
MTCL1 167 55 48 31 0 0 0.647 0.213 0.186 0.120 0.000 0.000 chr18 8700556 8837778
MTCP1 85 23 170 80 1 0 0.329 0.089 0.659 0.310 0.004 0.000 chrX 155059034 155076136
MTDH 184 68 63 29 0 0 0.713 0.264 0.244 0.112 0.000 0.000 chr8 97639184 97735260
MTERF1 219 83 34 19 1 1 0.849 0.322 0.132 0.074 0.004 0.004 chr7 91865929 91885702
MTERF2 227 85 30 19 1 1 0.880 0.329 0.116 0.074 0.004 0.004 chr12 106972277 106992146
MTERF3 146 43 105 56 0 0 0.566 0.167 0.407 0.217 0.000 0.000 chr8 96234402 96266610
MTERF4 198 72 55 31 2 1 0.767 0.279 0.213 0.120 0.008 0.004 chr2 241090571 241107287
MTF1 187 66 59 31 0 0 0.725 0.256 0.229 0.120 0.000 0.000 chr1 37804574 37864592
MTF2 169 55 74 40 0 0 0.655 0.213 0.287 0.155 0.000 0.000 chr1 93074283 93144076
MTFMT 163 40 81 55 0 0 0.632 0.155 0.314 0.213 0.000 0.000 chr15 64996512 65034639
MTFP1 221 75 36 29 0 0 0.857 0.291 0.140 0.112 0.000 0.000 chr22 30420768 30434054
MTFR1L 200 72 51 28 0 0 0.775 0.279 0.198 0.109 0.000 0.000 chr1 25814954 25837938
MTFR1 173 57 67 38 0 0 0.671 0.221 0.260 0.147 0.000 0.000 chr8 65639734 65715562
MTFR2 208 79 43 21 0 0 0.806 0.306 0.167 0.081 0.000 0.000 chr6 136226034 136255311
MTG1 213 76 36 22 0 0 0.826 0.295 0.140 0.085 0.000 0.000 chr10 133389157 133427520
MTG2 205 68 49 33 0 0 0.795 0.264 0.190 0.128 0.000 0.000 chr20 62178028 62208568
MTHFD1L 112 13 74 49 0 0 0.434 0.050 0.287 0.190 0.000 0.000 chr6 150860702 151106887
MTHFD1 170 57 52 26 0 0 0.659 0.221 0.202 0.101 0.000 0.000 chr14 64383353 64465025
MTHFD2L 99 25 125 68 0 0 0.384 0.097 0.484 0.264 0.000 0.000 chr4 74153118 74308099
MTHFD2 206 75 48 26 0 0 0.798 0.291 0.186 0.101 0.000 0.000 chr2 74193615 74222565
MTHFR 187 55 61 40 0 0 0.725 0.213 0.236 0.155 0.000 0.000 chr1 11780723 11810964
MTHFSD 203 70 47 28 0 0 0.787 0.271 0.182 0.109 0.000 0.000 chr16 86525186 86560235
MTHFS 196 69 44 28 0 0 0.760 0.267 0.171 0.109 0.000 0.000 chr15 79838547 79902014
MTIF2 191 68 57 33 0 0 0.740 0.264 0.221 0.128 0.000 0.000 chr2 55231595 55274231
MTIF3 206 69 48 33 0 0 0.798 0.267 0.186 0.128 0.000 0.000 chr13 27430643 27455564
MTLN 197 65 58 39 1 1 0.764 0.252 0.225 0.151 0.004 0.004 chr2 110206529 110217547
MTM1 73 15 179 85 0 0 0.283 0.058 0.694 0.329 0.000 0.000 chrX 150563621 150678143
MTMR10 138 30 102 64 0 0 0.535 0.116 0.395 0.248 0.000 0.000 chr15 30933941 30996628
MTMR11 190 68 63 33 0 0 0.736 0.264 0.244 0.128 0.000 0.000 chr1 149923651 149941879