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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

  Error connecting to IGV?   SUPT20HL2_chrX_24303210_24319069  SUPT20HL2_chrX_24303210_24319069 (clean+top1000)

Multiple Alignments (by translate haplotype frequency)Multiple Alignments (by aa haplotype frequency) Multiple Alignments (by translate haplotype similarity)Multiple Alignments (by aa haplotype similarity)

Item Value
geneid 170067
ensemblid ENSG00000223611.7
hgncid 31797
symbol SUPT20HL2
name SUPT20H like 2
refseq_nuc NM_001136233.3
refseq_prot NP_001129705.3
ensembl_nuc ENST00000486479.3
ensembl_prot ENSP00000503941.1
mane_status MANE Select
chr chrX
start 24308210
end 24314069
strand -
ver v1.2
region chrX:24308210-24314069
region5000 chrX:24303210-24319069
regionname0 SUPT20HL2_chrX_24308210_24314069
regionname5000 SUPT20HL2_chrX_24303210_24319069

ahapid grch38/
chm13v2 		alen total AFR AMR EAS EUR SAS JPT regionname genename aa chr start end
a0001 1/1 817 251 46 41 129 9 24 101 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0002 0/0 817 14 14 0 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0003 0/0 819 6 6 0 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0004 0/0 815 5 3 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0005 0/0 817 4 0 4 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0006 0/0 817 2 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0007 0/0 821 2 2 0 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0008 0/0 817 1 0 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0009 0/0 817 1 0 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0010 0/0 800 1 0 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0011 0/0 817 1 0 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0012 0/0 817 1 0 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0013 0/0 819 1 1 0 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0014 0/0 824 1 0 0 1 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0015 0/0 817 1 1 0 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0016 0/0 817 1 0 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069

chapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
c0001 1/1 2454 232 45 38 123 7 17 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0002 0/0 2454 16 1 2 6 0 7 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0003 0/0 2454 13 13 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0004 0/0 2460 6 6 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0005 0/0 2448 5 3 1 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0006 0/0 2454 4 0 4 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0007 0/0 2454 2 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0008 0/0 2454 2 0 0 0 2 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0009 0/0 2466 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0010 0/0 2454 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0011 0/0 2454 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0012 0/0 2454 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0013 0/0 2454 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0014 0/0 2475 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0015 0/0 2460 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0016 0/0 2454 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0017 0/0 2454 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0018 0/0 2454 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0019 0/0 2403 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
c0020 0/0 2454 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069

thapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
t0001 0/1 3406 124 4 29 75 4 11 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0002 0/0 3410 26 11 7 7 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0003 0/0 3407 12 12 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0004 0/0 3405 11 1 0 9 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0005 0/0 3410 9 1 2 4 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0006 0/0 3411 9 4 0 5 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0007 0/0 3414 7 7 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0008 1/0 3407 7 0 0 5 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0009 0/0 3414 5 5 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0010 0/0 3406 4 0 1 1 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0011 0/0 3406 4 0 0 4 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0012 0/0 3405 3 0 0 3 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0013 0/0 3409 3 1 1 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0014 0/0 3404 2 0 1 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0015 0/0 3406 2 0 0 1 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0016 0/0 3407 2 0 2 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0017 0/0 3409 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0018 0/0 3408 2 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0019 0/0 3409 2 1 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0020 0/0 3411 2 0 0 0 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0021 0/0 3405 2 0 0 2 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0022 0/0 3413 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0023 0/0 3406 2 0 0 2 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0024 0/0 3404 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0025 0/0 3412 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0026 0/0 3240 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0027 0/0 3584 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0028 0/0 3413 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0029 0/0 3414 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0030 0/0 3406 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0031 0/0 3406 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0032 0/0 3411 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0033 0/0 3398 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0034 0/0 3405 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0035 0/0 3405 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0036 0/0 3405 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0037 0/0 3405 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0038 0/0 3403 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0039 0/0 3405 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0040 0/0 3406 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0041 0/0 3406 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0042 0/0 3406 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0043 0/0 3408 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0044 0/0 3409 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0045 0/0 3409 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0046 0/0 3409 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0047 0/0 3414 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0048 0/0 3415 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0049 0/0 3348 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0050 0/0 3411 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0051 0/0 3412 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0052 0/0 3412 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0053 0/0 3412 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0054 0/0 3414 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0055 0/0 3381 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0056 0/0 3397 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0057 0/0 3411 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0058 0/0 3411 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0059 0/0 3412 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0060 0/0 3413 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0061 0/0 3408 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0062 0/0 3410 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0063 0/0 3415 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0064 0/0 3407 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0065 0/0 3412 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0066 0/0 3406 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0067 0/0 3240 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0068 0/0 3244 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0069 0/0 3243 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0070 0/0 3245 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0071 0/0 3078 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
t0072 0/0 3407 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069

ghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
g0000 1/1 293 74 50 133 9 25 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069

achapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
a0001c0001 1/1 2454 232 45 38 123 7 17 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002 0/0 2454 16 1 2 6 0 7 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0008 0/0 2454 2 0 0 0 2 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0017 0/0 2454 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0002c0003 0/0 2454 13 13 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0002c0010 0/0 2454 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0003c0004 0/0 2460 6 6 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0004c0005 0/0 2448 5 3 1 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0005c0006 0/0 2454 4 0 4 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0006c0007 0/0 2454 2 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0007c0009 0/0 2466 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0008c0020 0/0 2454 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0009c0012 0/0 2454 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0010c0019 0/0 2403 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0011c0018 0/0 2454 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0012c0016 0/0 2454 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0013c0015 0/0 2460 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0014c0014 0/0 2475 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0015c0013 0/0 2454 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0016c0011 0/0 2454 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069

acthapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
a0001c0001t0001 0/1 5859 115 3 24 73 3 11 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0002 0/0 5863 22 10 5 6 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0003 0/0 5860 12 12 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0004 0/0 5858 10 1 0 9 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0006 0/0 5864 8 3 0 5 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0008 1/0 5860 7 0 0 5 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0010 0/0 5859 4 0 1 1 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0011 0/0 5859 4 0 0 4 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0012 0/0 5858 3 0 0 3 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0013 0/0 5862 3 1 1 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0014 0/0 5857 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0015 0/0 5859 2 0 0 1 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0016 0/0 5860 2 0 2 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0018 0/0 5861 2 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0019 0/0 5862 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0021 0/0 5858 2 0 0 2 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0023 0/0 5859 2 0 0 2 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0024 0/0 5857 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0030 0/0 5859 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0031 0/0 5859 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0032 0/0 5864 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0033 0/0 5851 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0034 0/0 5858 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0035 0/0 5858 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0036 0/0 5858 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0037 0/0 5858 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0038 0/0 5856 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0040 0/0 5859 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0041 0/0 5859 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0042 0/0 5859 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0043 0/0 5861 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0044 0/0 5862 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0045 0/0 5862 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0047 0/0 5867 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0048 0/0 5868 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0049 0/0 5801 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0054 0/0 5867 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0055 0/0 5834 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0056 0/0 5850 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0057 0/0 5864 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0058 0/0 5864 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0059 0/0 5865 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0060 0/0 5866 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0061 0/0 5861 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0062 0/0 5863 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0065 0/0 5865 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0066 0/0 5859 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0067 0/0 5693 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0001t0072 0/0 5860 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002t0005 0/0 5863 9 1 2 4 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002t0019 0/0 5862 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002t0020 0/0 5864 2 0 0 0 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002t0046 0/0 5862 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002t0068 0/0 5697 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002t0069 0/0 5696 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0002t0070 0/0 5698 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0008t0001 0/0 5859 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0008t0004 0/0 5858 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0001c0017t0014 0/0 5857 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0002c0003t0007 0/0 5867 7 7 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0002c0003t0009 0/0 5867 5 5 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0002c0003t0029 0/0 5867 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0002c0010t0028 0/0 5866 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0003c0004t0022 0/0 5872 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0003c0004t0050 0/0 5870 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0003c0004t0051 0/0 5871 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0003c0004t0052 0/0 5871 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0003c0004t0053 0/0 5871 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0004c0005t0002 0/0 5857 2 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0004c0005t0006 0/0 5858 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0004c0005t0064 0/0 5854 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0004c0005t0071 0/0 5525 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0005c0006t0001 0/0 5859 3 0 3 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0005c0006t0039 0/0 5858 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0006c0007t0025 0/0 5865 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0006c0007t0063 0/0 5868 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0007c0009t0017 0/0 5874 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0008c0020t0026 0/0 5693 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0009c0012t0001 0/0 5859 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0010c0019t0001 0/0 5808 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0011c0018t0001 0/0 5859 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0012c0016t0001 0/0 5859 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0013c0015t0001 0/0 5865 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0014c0014t0002 0/0 5884 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0015c0013t0027 0/0 6037 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069
a0016c0011t0002 0/0 5863 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 copy fasta chrX 24303210 24319069

actghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
a0001c0001t0001g0000 0/1 115 3 24 73 3 11 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0002g0000 0/0 22 10 5 6 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0003g0000 0/0 12 12 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0004g0000 0/0 10 1 0 9 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0006g0000 0/0 8 3 0 5 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0008g0000 1/0 7 0 0 5 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0010g0000 0/0 4 0 1 1 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0011g0000 0/0 4 0 0 4 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0012g0000 0/0 3 0 0 3 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0013g0000 0/0 3 1 1 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0014g0000 0/0 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0015g0000 0/0 2 0 0 1 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0016g0000 0/0 2 0 2 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0018g0000 0/0 2 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0019g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0021g0000 0/0 2 0 0 2 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0023g0000 0/0 2 0 0 2 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0024g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0030g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0031g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0032g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0033g0000 0/0 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0034g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0035g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0036g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0037g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0038g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0040g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0041g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0042g0000 0/0 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0043g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0044g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0045g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0047g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0048g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0049g0000 0/0 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0054g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0055g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0056g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0057g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0058g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0059g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0060g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0061g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0062g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0065g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0066g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0067g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0001t0072g0000 0/0 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0002t0005g0000 0/0 9 1 2 4 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0002t0019g0000 0/0 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0002t0020g0000 0/0 2 0 0 0 0 2 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0002t0046g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0002t0068g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0002t0069g0000 0/0 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0002t0070g0000 0/0 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0008t0001g0000 0/0 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0008t0004g0000 0/0 1 0 0 0 1 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0001c0017t0014g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0002c0003t0007g0000 0/0 7 7 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0002c0003t0009g0000 0/0 5 5 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0002c0003t0029g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0002c0010t0028g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0003c0004t0022g0000 0/0 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0003c0004t0050g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0003c0004t0051g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0003c0004t0052g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0003c0004t0053g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0004c0005t0002g0000 0/0 2 1 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0004c0005t0006g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0004c0005t0064g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0004c0005t0071g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0005c0006t0001g0000 0/0 3 0 3 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0005c0006t0039g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0006c0007t0025g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0006c0007t0063g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0007c0009t0017g0000 0/0 2 2 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0008c0020t0026g0000 0/0 1 0 0 0 0 1 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0009c0012t0001g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0010c0019t0001g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0011c0018t0001g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0012c0016t0001g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0013c0015t0001g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0014c0014t0002g0000 0/0 1 0 0 1 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0015c0013t0027g0000 0/0 1 1 0 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
a0016c0011t0002g0000 0/0 1 0 1 0 0 0 SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069

sampleid ID
haplotypeid
 ahapid chapid thapid ghapid gpopname popname regionname genename chr start end
HG00099 hp1 a0001 c0001 t0002 g0000 EUR GBR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00099 hp2 a0001 c0001 t0001 g0000 EUR GBR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00140 hp1 a0001 c0001 t0049 g0000 EUR GBR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00280 hp1 a0001 c0001 t0001 g0000 EUR FIN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00408 hp1 a0001 c0001 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00408 hp2 a0009 c0012 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00423 hp1 a0001 c0001 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00423 hp2 a0001 c0001 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00544 hp1 a0001 c0001 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00544 hp2 a0012 c0016 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00597 hp1 a0001 c0002 t0046 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00597 hp2 a0001 c0001 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00609 hp1 a0001 c0001 t0040 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00621 hp1 a0001 c0001 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00639 hp1 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00639 hp2 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00642 hp1 a0001 c0001 t0002 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00673 hp1 a0001 c0001 t0001 g0000 EAS CHS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00738 hp1 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00741 hp1 a0001 c0001 t0038 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG00741 hp2 a0001 c0001 t0010 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01069 hp1 a0005 c0006 t0039 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01070 hp1 a0001 c0001 t0013 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01070 hp2 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01071 hp1 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01071 hp2 a0005 c0006 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01074 hp1 a0004 c0005 t0002 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01081 hp1 a0001 c0001 t0067 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01081 hp2 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01099 hp1 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01106 hp1 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01109 hp1 a0016 c0011 t0002 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01167 hp1 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01175 hp1 a0001 c0001 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01175 hp2 a0011 c0018 t0001 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01192 hp1 a0001 c0001 t0002 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01243 hp1 a0001 c0017 t0014 g0000 AMR PUR SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01255 hp1 a0001 c0001 t0001 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01256 hp1 a0001 c0001 t0001 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01258 hp1 a0001 c0001 t0001 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01261 hp1 a0001 c0002 t0005 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01346 hp1 a0001 c0001 t0002 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01346 hp2 a0001 c0001 t0001 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01358 hp1 a0001 c0001 t0001 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01433 hp1 a0001 c0001 t0001 g0000 AMR CLM SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01515 hp1 a0001 c0008 t0001 g0000 EUR IBS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01517 hp1 a0001 c0008 t0004 g0000 EUR IBS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01517 hp2 a0001 c0001 t0033 g0000 EUR IBS SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01884 hp1 a0001 c0001 t0003 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01884 hp2 a0003 c0004 t0050 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01891 hp1 a0001 c0001 t0002 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01891 hp2 a0002 c0003 t0007 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01928 hp1 a0010 c0019 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01934 hp1 a0001 c0002 t0005 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01943 hp1 a0006 c0007 t0025 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01952 hp1 a0001 c0001 t0002 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01975 hp1 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01975 hp2 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01978 hp1 a0005 c0006 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01978 hp2 a0001 c0001 t0041 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01981 hp1 a0001 c0001 t0016 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01981 hp2 a0001 c0001 t0016 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01993 hp1 a0001 c0001 t0002 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG01993 hp2 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02004 hp1 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02004 hp2 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02015 hp1 a0001 c0001 t0001 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02027 hp1 a0001 c0001 t0001 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02040 hp1 a0001 c0001 t0013 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02055 hp1 a0001 c0001 t0034 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02056 hp1 a0004 c0005 t0064 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02071 hp1 a0001 c0002 t0005 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02074 hp1 a0001 c0001 t0021 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02080 hp1 a0001 c0001 t0030 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02080 hp2 a0001 c0001 t0002 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02083 hp1 a0001 c0001 t0001 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02129 hp1 a0001 c0001 t0001 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02132 hp1 a0001 c0001 t0001 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02135 hp1 a0001 c0001 t0004 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02145 hp1 a0001 c0001 t0044 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02148 hp1 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02148 hp2 a0005 c0006 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02155 hp1 a0001 c0001 t0001 g0000 EAS CDX SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02155 hp2 a0001 c0002 t0005 g0000 EAS CDX SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02165 hp1 a0001 c0001 t0001 g0000 EAS CDX SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02165 hp2 a0001 c0001 t0010 g0000 EAS CDX SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02257 hp1 a0013 c0015 t0001 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02257 hp2 a0001 c0001 t0001 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02258 hp1 a0015 c0013 t0027 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02273 hp1 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02273 hp2 a0001 c0001 t0036 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02280 hp1 a0001 c0001 t0003 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02280 hp2 a0001 c0001 t0055 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02293 hp1 a0001 c0001 t0018 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02293 hp2 a0001 c0001 t0001 g0000 AMR PEL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02451 hp1 a0001 c0001 t0003 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02451 hp2 a0002 c0003 t0009 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02523 hp1 a0001 c0002 t0005 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02523 hp2 a0001 c0001 t0012 g0000 EAS KHV SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02572 hp1 a0001 c0001 t0006 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02602 hp1 a0001 c0002 t0070 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02615 hp1 a0001 c0001 t0003 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02615 hp2 a0001 c0001 t0056 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02622 hp1 a0001 c0001 t0032 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02622 hp2 a0001 c0001 t0003 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02647 hp1 a0002 c0003 t0007 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02683 hp1 a0001 c0001 t0042 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02683 hp2 a0001 c0001 t0001 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02698 hp1 a0001 c0001 t0014 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02717 hp1 a0002 c0003 t0007 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02723 hp1 a0001 c0001 t0002 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02723 hp2 a0001 c0001 t0047 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02735 hp1 a0001 c0001 t0015 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02738 hp1 a0001 c0002 t0020 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02809 hp1 a0001 c0001 t0003 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02809 hp2 a0002 c0003 t0029 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02886 hp1 a0001 c0001 t0002 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02886 hp2 a0001 c0001 t0001 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02895 hp1 a0002 c0003 t0007 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02897 hp1 a0004 c0005 t0071 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02897 hp2 a0002 c0003 t0007 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02922 hp1 a0001 c0001 t0004 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02922 hp2 a0001 c0001 t0002 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02965 hp1 a0003 c0004 t0051 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02970 hp1 a0003 c0004 t0022 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02970 hp2 a0004 c0005 t0002 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02976 hp1 a0003 c0004 t0022 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02976 hp2 a0002 c0003 t0009 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03017 hp1 a0001 c0001 t0010 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03041 hp1 a0001 c0001 t0013 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03041 hp2 a0001 c0001 t0003 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03098 hp1 a0001 c0001 t0006 g0000 AFR MSL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03130 hp1 a0001 c0001 t0002 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03139 hp1 a0001 c0001 t0003 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03195 hp1 a0002 c0010 t0028 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03195 hp2 a0001 c0001 t0061 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03209 hp1 a0004 c0005 t0006 g0000 AFR MSL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03225 hp1 a0001 c0001 t0057 g0000 AFR MSL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03239 hp1 a0001 c0001 t0001 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03239 hp2 a0001 c0002 t0069 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03486 hp1 a0002 c0003 t0009 g0000 AFR MSL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03486 hp2 a0002 c0003 t0009 g0000 AFR MSL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03492 hp1 a0001 c0001 t0001 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03516 hp1 a0007 c0009 t0017 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03516 hp2 a0001 c0001 t0048 g0000 AFR ESN SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03540 hp1 a0001 c0001 t0002 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03540 hp2 a0001 c0001 t0062 g0000 AFR GWD SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03579 hp1 a0001 c0001 t0002 g0000 AFR MSL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03654 hp1 a0001 c0001 t0001 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03688 hp1 a0001 c0001 t0001 g0000 SAS STU SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03704 hp1 a0001 c0001 t0001 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03704 hp2 a0001 c0001 t0001 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03710 hp1 a0001 c0002 t0005 g0000 SAS PJL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03834 hp1 a0001 c0001 t0010 g0000 SAS BEB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03834 hp2 a0001 c0001 t0008 g0000 SAS BEB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03942 hp1 a0001 c0001 t0001 g0000 SAS BEB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG04115 hp1 a0001 c0001 t0001 g0000 SAS STU SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG04184 hp1 a0001 c0001 t0001 g0000 SAS BEB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG04184 hp2 a0001 c0001 t0001 g0000 SAS BEB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG04199 hp1 a0001 c0002 t0020 g0000 SAS STU SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG04204 hp1 a0008 c0020 t0026 g0000 SAS STU SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG04228 hp1 a0001 c0002 t0005 g0000 SAS STU SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18522 hp1 a0001 c0001 t0019 g0000 AFR YRI SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18612 hp1 a0001 c0001 t0011 g0000 EAS CHB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18747 hp1 a0001 c0001 t0004 g0000 EAS CHB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18906 hp1 a0001 c0001 t0002 g0000 AFR YRI SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18906 hp2 a0001 c0001 t0054 g0000 AFR YRI SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18939 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18939 hp2 a0001 c0001 t0023 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18940 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18942 hp1 a0001 c0001 t0002 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18942 hp2 a0001 c0001 t0004 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18943 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18944 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18945 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18947 hp1 a0001 c0001 t0002 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18947 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18948 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18949 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18949 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18950 hp1 a0001 c0001 t0006 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18950 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18951 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18951 hp2 a0001 c0001 t0011 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18952 hp1 a0001 c0001 t0058 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18953 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18957 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18957 hp2 a0001 c0002 t0005 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18959 hp1 a0001 c0001 t0008 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18960 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18961 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18962 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18965 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18966 hp1 a0001 c0001 t0031 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18967 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18969 hp1 a0001 c0001 t0012 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18969 hp2 a0001 c0001 t0012 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18970 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18971 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18974 hp1 a0001 c0001 t0008 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18977 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18979 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18979 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18980 hp1 a0001 c0001 t0066 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18980 hp2 a0001 c0002 t0068 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18981 hp1 a0001 c0001 t0004 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18981 hp2 a0001 c0001 t0035 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18982 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18983 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18984 hp1 a0001 c0001 t0004 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18985 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18987 hp1 a0001 c0001 t0006 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18987 hp2 a0001 c0001 t0021 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18988 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18989 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18990 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18992 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18992 hp2 a0001 c0001 t0002 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18994 hp1 a0001 c0001 t0043 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18995 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18997 hp1 a0001 c0001 t0059 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18997 hp2 a0001 c0001 t0004 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18999 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18999 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19000 hp1 a0001 c0001 t0008 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19002 hp1 a0001 c0001 t0006 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19002 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19003 hp1 a0014 c0014 t0002 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19003 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19004 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19005 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19006 hp1 a0001 c0001 t0008 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19007 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19009 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19012 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19030 hp1 a0001 c0001 t0006 g0000 AFR LWK SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19030 hp2 a0007 c0009 t0017 g0000 AFR LWK SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19043 hp1 a0001 c0001 t0003 g0000 AFR LWK SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19055 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19056 hp1 a0001 c0001 t0004 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19058 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19060 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19062 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19063 hp1 a0001 c0001 t0037 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19065 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19065 hp2 a0001 c0001 t0006 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19066 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19067 hp1 a0001 c0001 t0008 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19068 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19070 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19072 hp1 a0001 c0001 t0002 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19074 hp1 a0001 c0001 t0004 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19074 hp2 a0001 c0001 t0011 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19075 hp1 a0001 c0001 t0024 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19076 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19077 hp1 a0001 c0001 t0065 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19077 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19079 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19081 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19081 hp2 a0001 c0001 t0006 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19082 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19083 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19084 hp1 a0001 c0001 t0011 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19084 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19085 hp1 a0001 c0001 t0023 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19086 hp1 a0001 c0001 t0004 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19088 hp1 a0001 c0001 t0002 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19089 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19090 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19090 hp2 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19091 hp1 a0001 c0001 t0015 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19240 hp1 a0001 c0001 t0003 g0000 AFR YRI SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA19240 hp2 a0001 c0001 t0003 g0000 AFR YRI SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA20129 hp1 a0002 c0003 t0007 g0000 AFR ASW SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA20129 hp2 a0001 c0001 t0045 g0000 AFR ASW SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA20752 hp1 a0001 c0001 t0072 g0000 EUR TSI SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA20805 hp1 a0001 c0001 t0001 g0000 EUR TSI SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA20905 hp1 a0001 c0002 t0019 g0000 SAS GIH SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02109 hp1 a0001 c0001 t0002 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02109 hp2 a0001 c0001 t0003 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02486 hp1 a0001 c0002 t0005 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02559 hp1 a0002 c0003 t0009 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG02559 hp2 a0001 c0001 t0060 g0000 AFR ACB SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG03471 hp1 a0003 c0004 t0053 g0000 AFR MSL SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG06807 hp1 a0003 c0004 t0052 g0000 AFR USA SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
HG06807 hp2 a0006 c0007 t0063 g0000 AFR USA SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA18955 hp1 a0001 c0001 t0001 g0000 EAS JPT SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA20300 hp1 a0001 c0001 t0002 g0000 AFR USA SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA20300 hp2 a0002 c0003 t0007 g0000 AFR USA SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA21309 hp1 a0001 c0001 t0001 g0000 AFR LWK SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
NA21309 hp2 a0001 c0001 t0018 g0000 AFR LWK SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
homoSapiens_chm13v2 hp1 a0001 c0001 t0001 g0000 REF REF SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069
homoSapiens_grch38 hp1 a0001 c0001 t0008 g0000 REF REF SUPT20HL2_chrX_24303210_24319069 SUPT20HL2 chrX 24303210 24319069

chr:pos ref alt #
# of ahapid:amino-acid(protein) level
 ahapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:24311265 G
G
 C
C
 1 a0005
a0005
 4 HG01069.hp1
HG01071.hp2
HG01978.hp1
others(1): Show 
HG01069.hp1
HG01071.hp2
HG01978.hp1
HG02148.hp2
 missense_variant MODERATE c.2051C>G
c.2051C>G
 p.Pro684Arg
p.Pro684Arg
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2805/5860 2051/2454 684/817 chrX 24311265
chrX:24311568 C
C
 T
T
 1 a0012
a0012
 1 HG00544.hp2
HG00544.hp2
 missense_variant MODERATE c.1748G>A
c.1748G>A
 p.Arg583Gln
p.Arg583Gln
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2502/5860 1748/2454 583/817 chrX 24311568
chrX:24311620 C
C
 A
A
 1 a0011
a0011
 1 HG01175.hp2
HG01175.hp2
 missense_variant MODERATE c.1696G>T
c.1696G>T
 p.Val566Phe
p.Val566Phe
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2450/5860 1696/2454 566/817 chrX 24311620
chrX:24311662 C
C
 G
G
 4 a0002
a0003
a0006
others(1): Show 
a0002
a0003
a0006
a0015
 23 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(20): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA20129.hp1
NA20300.hp2
 missense_variant MODERATE c.1654G>C
c.1654G>C
 p.Gly552Arg
p.Gly552Arg
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2408/5860 1654/2454 552/817 chrX 24311662
chrX:24311676 C
C
 T
T
 1 a0002
a0002
 14 HG01891.hp2
HG02451.hp2
HG02559.hp1
others(11): Show 
HG01891.hp2
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03195.hp1
HG03486.hp1
HG03486.hp2
NA20129.hp1
NA20300.hp2
 missense_variant MODERATE c.1640G>A
c.1640G>A
 p.Arg547His
p.Arg547His
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2394/5860 1640/2454 547/817 chrX 24311676
chrX:24311767 A
A
 AAGCAGC
AAGCAGC
 1 a0003
a0003
 6 HG01884.hp2
HG02965.hp1
HG02970.hp1
others(3): Show 
HG01884.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG03471.hp1
HG06807.hp1
 conservative_inframe_insertion MODERATE c.1548_1549insGCTGCT
c.1548_1549insGCTGCT
 p.Ala516_Leu517insAl
others(4): Show 
p.Ala516_Leu517insAlaAla
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2302/5860 1548/2454 516/817 chrX 24311767
chrX:24311767 AAGCAGGA
others(44): Show 
AAGCAGGAGCAGCAGCAGGAGCAGGAGCAGGAGCAGGAGCAGCAGCAGCT
AC
 A
A
 1 a0010
a0010
 1 HG01928.hp1
HG01928.hp1
 conservative_inframe_deletion MODERATE c.1498_1548delGTAGCT
others(45): Show 
c.1498_1548delGTAGCTGCTGCTGCTCCTGCTCCTGCTCCTGCTCCT
GCTGCTGCTCCTGCT
 p.Val500_Ala516del
p.Val500_Ala516del
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2302/5860 1498/2454 500/817 chrX 24311767
chrX:24311773 G
G
 C
C
 4 a0002
a0003
a0006
others(1): Show 
a0002
a0003
a0006
a0015
 23 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(20): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA20129.hp1
NA20300.hp2
 missense_variant MODERATE c.1543C>G
c.1543C>G
 p.Pro515Ala
p.Pro515Ala
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2297/5860 1543/2454 515/817 chrX 24311773
chrX:24311779 C
C
 CAGCAGG
CAGCAGG
 1 a0013
a0013
 1 HG02257.hp1
HG02257.hp1
 conservative_inframe_insertion MODERATE c.1531_1536dupCCTGCT
c.1531_1536dupCCTGCT
 p.Ala512_Ala513insPr
others(4): Show 
p.Ala512_Ala513insProAla
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2290/5860 1536/2454 512/817 chrX 24311779
chrX:24311779 C
C
 CAGCAGGA
others(5): Show 
CAGCAGGAGCAGG
 1 a0007
a0007
 2 HG03516.hp1
NA19030.hp2
HG03516.hp1
NA19030.hp2
 conservative_inframe_insertion MODERATE c.1525_1536dupCCTGCT
others(6): Show 
c.1525_1536dupCCTGCTCCTGCT
 p.Ala512_Ala513insPr
others(10): Show 
p.Ala512_Ala513insProAlaProAla
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2290/5860 1536/2454 512/817 chrX 24311779
chrX:24311779 CAGCAGG
CAGCAGG
 C
C
 1 a0004
a0004
 5 HG01074.hp1
HG02056.hp1
HG02897.hp1
others(2): Show 
HG01074.hp1
HG02056.hp1
HG02897.hp1
HG02970.hp2
HG03209.hp1
 conservative_inframe_deletion MODERATE c.1531_1536delCCTGCT
c.1531_1536delCCTGCT
 p.Pro511_Ala512del
p.Pro511_Ala512del
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2290/5860 1531/2454 511/817 chrX 24311779
chrX:24311782 C
C
 CAGGAGCA
others(14): Show 
CAGGAGCAGGAGCAGGAGCAGG
 1 a0014
a0014
 1 NA19003.hp1
NA19003.hp1
 conservative_inframe_insertion MODERATE c.1513_1533dupCCTGCT
others(15): Show 
c.1513_1533dupCCTGCTCCTGCTCCTGCTCCT
 p.Pro511_Ala512insPr
others(19): Show 
p.Pro511_Ala512insProAlaProAlaProAlaPro
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2287/5860 1533/2454 511/817 chrX 24311782
chrX:24311826 G
G
 A
A
 1 a0015
a0015
 1 HG02258.hp1
HG02258.hp1
 missense_variant MODERATE c.1490C>T
c.1490C>T
 p.Ala497Val
p.Ala497Val
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2244/5860 1490/2454 497/817 chrX 24311826
chrX:24312526 C
C
 T
T
 1 a0009
a0009
 1 HG00408.hp2
HG00408.hp2
 missense_variant MODERATE c.790G>A
c.790G>A
 p.Val264Met
p.Val264Met
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1544/5860 790/2454 264/817 chrX 24312526
chrX:24312606 T
T
 C
C
 1 a0016
a0016
 1 HG01109.hp1
HG01109.hp1
 missense_variant MODERATE c.710A>G
c.710A>G
 p.Gln237Arg
p.Gln237Arg
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1464/5860 710/2454 237/817 chrX 24312606
chrX:24312610 C
C
 T
T
 1 a0016
a0016
 1 HG01109.hp1
HG01109.hp1
 missense_variant MODERATE c.706G>A
c.706G>A
 p.Glu236Lys
p.Glu236Lys
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1460/5860 706/2454 236/817 chrX 24312610
chrX:24313129 T
T
 G
G
 1 a0008
a0008
 1 HG04204.hp1
HG04204.hp1
 missense_variant MODERATE c.187A>C
c.187A>C
 p.Asn63His
p.Asn63His
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 941/5860 187/2454 63/817 chrX 24313129

chr:pos ref alt #
# of chapid
 chapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:24311342 C
C
 T
T
 1 a0001c0017
a0001c0017
 1 HG01243.hp1
HG01243.hp1
 synonymous_variant LOW c.1974G>A
c.1974G>A
 p.Ala658Ala
p.Ala658Ala
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2728/5860 1974/2454 658/817 chrX 24311342
chrX:24311617 G
G
 T
T
 1 a0011c0018
a0011c0018
 1 HG01175.hp2
HG01175.hp2
 synonymous_variant LOW c.1699C>A
c.1699C>A
 p.Arg567Arg
p.Arg567Arg
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2453/5860 1699/2454 567/817 chrX 24311617
chrX:24311618 G
G
 C
C
 1 a0011c0018
a0011c0018
 1 HG01175.hp2
HG01175.hp2
 synonymous_variant LOW c.1698C>G
c.1698C>G
 p.Val566Val
p.Val566Val
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2452/5860 1698/2454 566/817 chrX 24311618
chrX:24311954 G
G
 C
C
 6 a0001c0002
a0002c0003
a0002c0010
others(3): Show 
a0001c0002
a0002c0003
a0002c0010
a0003c0004
a0006c0007
a0015c0013
 39 HG00597.hp1
HG01261.hp1
HG01884.hp2
others(36): Show 
HG00597.hp1
HG01261.hp1
HG01884.hp2
HG01891.hp2
HG01934.hp1
HG01943.hp1
HG02071.hp1
HG02155.hp2
HG02258.hp1
HG02451.hp2
HG02486.hp1
HG02523.hp1
HG02559.hp1
HG02602.hp1
HG02647.hp1
HG02717.hp1
HG02738.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03239.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03710.hp1
HG04199.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18957.hp2
NA18980.hp2
NA20129.hp1
NA20300.hp2
NA20905.hp1
 synonymous_variant LOW c.1362C>G
c.1362C>G
 p.Ser454Ser
p.Ser454Ser
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2116/5860 1362/2454 454/817 chrX 24311954
chrX:24311993 T
T
 C
C
 5 a0002c0003
a0002c0010
a0003c0004
others(2): Show 
a0002c0003
a0002c0010
a0003c0004
a0006c0007
a0015c0013
 23 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(20): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA20129.hp1
NA20300.hp2
 synonymous_variant LOW c.1323A>G
c.1323A>G
 p.Pro441Pro
p.Pro441Pro
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2077/5860 1323/2454 441/817 chrX 24311993
chrX:24312020 G
G
 A
A
 5 a0002c0003
a0002c0010
a0003c0004
others(2): Show 
a0002c0003
a0002c0010
a0003c0004
a0006c0007
a0015c0013
 23 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(20): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA20129.hp1
NA20300.hp2
 synonymous_variant LOW c.1296C>T
c.1296C>T
 p.Val432Val
p.Val432Val
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2050/5860 1296/2454 432/817 chrX 24312020
chrX:24312269 G
G
 A
A
 1 a0001c0002
a0001c0002
 16 HG00597.hp1
HG01261.hp1
HG01934.hp1
others(13): Show 
HG00597.hp1
HG01261.hp1
HG01934.hp1
HG02071.hp1
HG02155.hp2
HG02486.hp1
HG02523.hp1
HG02602.hp1
HG02738.hp1
HG03239.hp2
HG03710.hp1
HG04199.hp1
HG04228.hp1
NA18957.hp2
NA18980.hp2
NA20905.hp1
 synonymous_variant LOW c.1047C>T
c.1047C>T
 p.Asp349Asp
p.Asp349Asp
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1801/5860 1047/2454 349/817 chrX 24312269
chrX:24312422 A
A
 G
G
 1 a0001c0008
a0001c0008
 2 HG01515.hp1
HG01517.hp1
HG01515.hp1
HG01517.hp1
 synonymous_variant LOW c.894T>C
c.894T>C
 p.Cys298Cys
p.Cys298Cys
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1648/5860 894/2454 298/817 chrX 24312422
chrX:24312440 C
C
 T
T
 1 a0002c0003
a0002c0003
 13 HG01891.hp2
HG02451.hp2
HG02559.hp1
others(10): Show 
HG01891.hp2
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03486.hp1
HG03486.hp2
NA20129.hp1
NA20300.hp2
 synonymous_variant LOW c.876G>A
c.876G>A
 p.Thr292Thr
p.Thr292Thr
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1630/5860 876/2454 292/817 chrX 24312440
chrX:24312458 C
C
 T
T
 5 a0002c0003
a0002c0010
a0003c0004
others(2): Show 
a0002c0003
a0002c0010
a0003c0004
a0006c0007
a0015c0013
 23 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(20): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA20129.hp1
NA20300.hp2
 synonymous_variant LOW c.858G>A
c.858G>A
 p.Ala286Ala
p.Ala286Ala
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1612/5860 858/2454 286/817 chrX 24312458
chrX:24313211 A
A
 G
G
 3 a0002c0003
a0002c0010
a0006c0007
a0002c0003
a0002c0010
a0006c0007
 16 HG01891.hp2
HG01943.hp1
HG02451.hp2
others(13): Show 
HG01891.hp2
HG01943.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03195.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp2
NA20129.hp1
NA20300.hp2
 synonymous_variant LOW c.105T>C
c.105T>C
 p.Thr35Thr
p.Thr35Thr
 SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 859/5860 105/2454 35/817 chrX 24313211

chr:pos ref alt #
# of thapid:transcript level
 thapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:24308463 GTCCAGGC
others(6): Show 
GTCCAGGCTGCTCT
 G
G
 1 a0001c0001t0056
a0001c0001t0056
 1 HG02615.hp2
HG02615.hp2
 3_prime_UTR_variant MODIFIER c.*2386_*2398delAGAG
others(9): Show 
c.*2386_*2398delAGAGCAGCCTGGA
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2386 chrX 24308463
chrX:24308758 T
T
 A
A
 1 a0003c0004t0052
a0003c0004t0052
 1 HG06807.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*2104A>T
c.*2104A>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2104 chrX 24308758
chrX:24308828 G
G
 GAATT
GAATT
 15 a0001c0001t0047
a0001c0001t0048
a0001c0001t0054
others(12): Show 
a0001c0001t0047
a0001c0001t0048
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0002c0010t0028
a0003c0004t0022
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0053
a0006c0007t0025
a0006c0007t0063
a0015c0013t0027
 26 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(23): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02723.hp2
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03516.hp2
HG06807.hp1
HG06807.hp2
NA18906.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*2033_*2034insAATT
c.*2033_*2034insAATT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 2033 chrX 24308828
chrX:24308870 C
C
 T
T
 1 a0007c0009t0017
a0007c0009t0017
 2 HG03516.hp1
NA19030.hp2
HG03516.hp1
NA19030.hp2
 3_prime_UTR_variant MODIFIER c.*1992G>A
c.*1992G>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1992 chrX 24308870
chrX:24308912 T
T
 C
C
 1 a0001c0001t0021
a0001c0001t0021
 2 HG02074.hp1
NA18987.hp2
HG02074.hp1
NA18987.hp2
 3_prime_UTR_variant MODIFIER c.*1950A>G
c.*1950A>G
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1950 chrX 24308912
chrX:24309044 G
G
 A
A
 1 a0001c0001t0041
a0001c0001t0041
 1 HG01978.hp2
HG01978.hp2
 3_prime_UTR_variant MODIFIER c.*1818C>T
c.*1818C>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1818 chrX 24309044
chrX:24309215 T
T
 C
C
 6 a0001c0001t0010
a0001c0001t0016
a0001c0001t0021
others(3): Show 
a0001c0001t0010
a0001c0001t0016
a0001c0001t0021
a0001c0001t0036
a0001c0001t0067
a0008c0020t0026
 11 HG00741.hp2
HG01081.hp1
HG01981.hp1
others(8): Show 
HG00741.hp2
HG01081.hp1
HG01981.hp1
HG01981.hp2
HG02074.hp1
HG02165.hp2
HG02273.hp2
HG03017.hp1
HG03834.hp1
HG04204.hp1
NA18987.hp2
 3_prime_UTR_variant MODIFIER c.*1647A>G
c.*1647A>G
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1647 chrX 24309215
chrX:24309368 C
C
 T
T
 2 a0001c0001t0035
a0001c0001t0040
a0001c0001t0035
a0001c0001t0040
 2 HG00609.hp1
NA18981.hp2
HG00609.hp1
NA18981.hp2
 3_prime_UTR_variant MODIFIER c.*1494G>A
c.*1494G>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1494 chrX 24309368
chrX:24309586 G
G
 A
A
 2 a0002c0010t0028
a0015c0013t0027
a0002c0010t0028
a0015c0013t0027
 2 HG02258.hp1
HG03195.hp1
HG02258.hp1
HG03195.hp1
 3_prime_UTR_variant MODIFIER c.*1276C>T
c.*1276C>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1276 chrX 24309586
chrX:24309677 T
T
 TA
TA
 2 a0001c0001t0032
a0001c0001t0043
a0001c0001t0032
a0001c0001t0043
 2 HG02622.hp1
NA18994.hp1
HG02622.hp1
NA18994.hp1
 3_prime_UTR_variant MODIFIER c.*1184dupT
c.*1184dupT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1184 chrX 24309677
chrX:24309677 TA
TA
 T
T
 2 a0001c0001t0024
a0005c0006t0039
a0001c0001t0024
a0005c0006t0039
 2 HG01069.hp1
NA19075.hp1
HG01069.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*1184delT
c.*1184delT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1184 chrX 24309677
chrX:24309687 AAAATTAA
others(52): Show 
AAAATTAAAAAAAAAAATTAAAAAAAAAAAGAAAAAAATAATAAAAATAA
AAAAAAAAAG
 A
A
 1 a0001c0001t0049
a0001c0001t0049
 1 HG00140.hp1
HG00140.hp1
 3_prime_UTR_variant MODIFIER c.*1116_*1174delCTTT
others(55): Show 
c.*1116_*1174delCTTTTTTTTTTTATTTTTATTATTTTTTTCTTTT
TTTTTTTAATTTTTTTTTTTAATTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1116 chrX 24309687
chrX:24309689 AAT
AAT
 A
A
 2 a0003c0004t0050
a0003c0004t0053
a0003c0004t0050
a0003c0004t0053
 2 HG01884.hp2
HG03471.hp1
HG01884.hp2
HG03471.hp1
 3_prime_UTR_variant MODIFIER c.*1171_*1172delAT
c.*1171_*1172delAT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1171 chrX 24309689
chrX:24309691 TTA
TTA
 T
T
 1 a0006c0007t0025
a0006c0007t0025
 1 HG01943.hp1
HG01943.hp1
 3_prime_UTR_variant MODIFIER c.*1169_*1170delTA
c.*1169_*1170delTA
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1169 chrX 24309691
chrX:24309692 TA
TA
 T
T
 12 a0001c0001t0012
a0001c0001t0054
a0001c0002t0046
others(9): Show 
a0001c0001t0012
a0001c0001t0054
a0001c0002t0046
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0002c0010t0028
a0003c0004t0022
a0003c0004t0051
a0003c0004t0052
a0006c0007t0063
a0015c0013t0027
 25 HG00597.hp1
HG01891.hp2
HG02258.hp1
others(22): Show 
HG00597.hp1
HG01891.hp2
HG02258.hp1
HG02451.hp2
HG02523.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA18906.hp2
NA18969.hp1
NA18969.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*1169delT
c.*1169delT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1169 chrX 24309692
chrX:24309693 A
A
 T
T
 2 a0003c0004t0050
a0003c0004t0053
a0003c0004t0050
a0003c0004t0053
 2 HG01884.hp2
HG03471.hp1
HG01884.hp2
HG03471.hp1
 3_prime_UTR_variant MODIFIER c.*1169T>A
c.*1169T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1169 chrX 24309693
chrX:24309705 TA
TA
 T
T
 3 a0001c0001t0003
a0001c0001t0018
a0001c0001t0045
a0001c0001t0003
a0001c0001t0018
a0001c0001t0045
 15 HG01884.hp1
HG02109.hp2
HG02280.hp1
others(12): Show 
HG01884.hp1
HG02109.hp2
HG02280.hp1
HG02293.hp1
HG02451.hp1
HG02615.hp1
HG02622.hp2
HG02809.hp1
HG03041.hp2
HG03139.hp1
NA19043.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp2
NA21309.hp2
 3_prime_UTR_variant MODIFIER c.*1156delT
c.*1156delT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1156 chrX 24309705
chrX:24309705 TAAA
TAAA
 T
T
 1 a0001c0001t0038
a0001c0001t0038
 1 HG00741.hp1
HG00741.hp1
 3_prime_UTR_variant MODIFIER c.*1154_*1156delTTT
c.*1154_*1156delTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1154 chrX 24309705
chrX:24309706 A
A
 T
T
 3 a0001c0001t0034
a0001c0001t0044
a0007c0009t0017
a0001c0001t0034
a0001c0001t0044
a0007c0009t0017
 4 HG02055.hp1
HG02145.hp1
HG03516.hp1
others(1): Show 
HG02055.hp1
HG02145.hp1
HG03516.hp1
NA19030.hp2
 3_prime_UTR_variant MODIFIER c.*1156T>A
c.*1156T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1156 chrX 24309706
chrX:24309716 AG
AG
 A
A
 1 a0001c0001t0058
a0001c0001t0058
 1 NA18952.hp1
NA18952.hp1
 3_prime_UTR_variant MODIFIER c.*1145delC
c.*1145delC
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1145 chrX 24309716
chrX:24309720 AAAAATAA
others(19): Show 
AAAAATAATAAAAATAAAAAAAAAAAG
 A
A
 1 a0001c0001t0055
a0001c0001t0055
 1 HG02280.hp2
HG02280.hp2
 3_prime_UTR_variant MODIFIER c.*1116_*1141delCTTT
others(22): Show 
c.*1116_*1141delCTTTTTTTTTTTATTTTTATTATTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1116 chrX 24309720
chrX:24309721 A
A
 AAAG
AAAG
 5 a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
others(2): Show 
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0015c0013t0027
 15 HG01891.hp2
HG02258.hp1
HG02451.hp2
others(12): Show 
HG01891.hp2
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03486.hp1
HG03486.hp2
NA18906.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*1140_*1141insCTT
c.*1140_*1141insCTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1140 chrX 24309721
chrX:24309721 A
A
 AAAT
AAAT
 5 a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
others(2): Show 
a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
a0006c0007t0025
a0006c0007t0063
 6 HG01943.hp1
HG02970.hp1
HG02976.hp1
others(3): Show 
HG01943.hp1
HG02970.hp1
HG02976.hp1
HG03195.hp1
HG03471.hp1
HG06807.hp2
 3_prime_UTR_variant MODIFIER c.*1140_*1141insATT
c.*1140_*1141insATT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1140 chrX 24309721
chrX:24309722 A
A
 T
T
 1 a0001c0001t0058
a0001c0001t0058
 1 NA18952.hp1
NA18952.hp1
 3_prime_UTR_variant MODIFIER c.*1140T>A
c.*1140T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1140 chrX 24309722
chrX:24309723 A
A
 AT
AT
 3 a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
 3 HG01884.hp2
HG02965.hp1
HG06807.hp1
HG01884.hp2
HG02965.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*1138_*1139insA
c.*1138_*1139insA
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1138 chrX 24309723
chrX:24309725 T
T
 A
A
 13 a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
others(10): Show 
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0002c0010t0028
a0003c0004t0022
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0053
a0006c0007t0025
a0006c0007t0063
a0015c0013t0027
 24 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(21): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA18906.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*1137A>T
c.*1137A>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1137 chrX 24309725
chrX:24309728 T
T
 A
A
 3 a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
 3 HG01884.hp2
HG02965.hp1
HG06807.hp1
HG01884.hp2
HG02965.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*1134A>T
c.*1134A>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1134 chrX 24309728
chrX:24309728 T
T
 TA
TA
 1 a0001c0001t0061
a0001c0001t0061
 1 HG03195.hp2
HG03195.hp2
 3_prime_UTR_variant MODIFIER c.*1133dupT
c.*1133dupT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1133 chrX 24309728
chrX:24309730 A
A
 AAT
AAT
 6 a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
others(3): Show 
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0006c0007t0063
a0015c0013t0027
 16 HG01891.hp2
HG02258.hp1
HG02451.hp2
others(13): Show 
HG01891.hp2
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03486.hp1
HG03486.hp2
HG06807.hp2
NA18906.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*1131_*1132insAT
c.*1131_*1132insAT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1131 chrX 24309730
chrX:24309730 A
A
 T
T
 3 a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
 3 HG01884.hp2
HG02965.hp1
HG06807.hp1
HG01884.hp2
HG02965.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*1132T>A
c.*1132T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1132 chrX 24309730
chrX:24309732 A
A
 T
T
 4 a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
others(1): Show 
a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
a0006c0007t0025
 5 HG01943.hp1
HG02970.hp1
HG02976.hp1
others(2): Show 
HG01943.hp1
HG02970.hp1
HG02976.hp1
HG03195.hp1
HG03471.hp1
 3_prime_UTR_variant MODIFIER c.*1130T>A
c.*1130T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1130 chrX 24309732
chrX:24309734 T
T
 A
A
 24 a0001c0001t0002
a0001c0001t0006
a0001c0001t0013
others(21): Show 
a0001c0001t0002
a0001c0001t0006
a0001c0001t0013
a0001c0001t0032
a0001c0001t0042
a0001c0001t0047
a0001c0001t0048
a0001c0001t0056
a0001c0001t0057
a0001c0001t0058
a0001c0001t0059
a0001c0001t0060
a0001c0001t0061
a0001c0001t0062
a0001c0001t0065
a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
a0004c0005t0002
a0004c0005t0006
a0004c0005t0071
a0006c0007t0025
a0014c0014t0002
a0016c0011t0002
 56 HG00099.hp1
HG00642.hp1
HG01070.hp1
others(53): Show 
HG00099.hp1
HG00642.hp1
HG01070.hp1
HG01074.hp1
HG01109.hp1
HG01192.hp1
HG01346.hp1
HG01891.hp1
HG01943.hp1
HG01952.hp1
HG01993.hp1
HG02040.hp1
HG02080.hp2
HG02109.hp1
HG02559.hp2
HG02572.hp1
HG02615.hp2
HG02622.hp1
HG02683.hp1
HG02723.hp1
HG02723.hp2
HG02886.hp1
HG02897.hp1
HG02922.hp2
HG02970.hp1
HG02970.hp2
HG02976.hp1
HG03041.hp1
HG03098.hp1
HG03130.hp1
HG03195.hp1
HG03195.hp2
HG03209.hp1
HG03225.hp1
HG03471.hp1
HG03516.hp2
HG03540.hp1
HG03540.hp2
HG03579.hp1
NA18906.hp1
NA18942.hp1
NA18947.hp1
NA18950.hp1
NA18952.hp1
NA18987.hp1
NA18992.hp2
NA18997.hp1
NA19002.hp1
NA19003.hp1
NA19030.hp1
NA19065.hp2
NA19072.hp1
NA19077.hp1
NA19081.hp2
NA19088.hp1
NA20300.hp1
 3_prime_UTR_variant MODIFIER c.*1128A>T
c.*1128A>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1128 chrX 24309734
chrX:24309736 A
A
 T
T
 4 a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
others(1): Show 
a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
a0006c0007t0025
 5 HG01943.hp1
HG02970.hp1
HG02976.hp1
others(2): Show 
HG01943.hp1
HG02970.hp1
HG02976.hp1
HG03195.hp1
HG03471.hp1
 3_prime_UTR_variant MODIFIER c.*1126T>A
c.*1126T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1126 chrX 24309736
chrX:24309737 A
A
 AT
AT
 4 a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
others(1): Show 
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0015c0013t0027
 4 HG01884.hp2
HG02258.hp1
HG02965.hp1
others(1): Show 
HG01884.hp2
HG02258.hp1
HG02965.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*1124_*1125insA
c.*1124_*1125insA
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1124 chrX 24309737
chrX:24309738 A
A
 T
T
 5 a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
others(2): Show 
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0006c0007t0063
 15 HG01891.hp2
HG02451.hp2
HG02559.hp1
others(12): Show 
HG01891.hp2
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03486.hp1
HG03486.hp2
HG06807.hp2
NA18906.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*1124T>A
c.*1124T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1124 chrX 24309738
chrX:24309740 A
A
 T
T
 4 a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
others(1): Show 
a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
a0006c0007t0025
 5 HG01943.hp1
HG02970.hp1
HG02976.hp1
others(2): Show 
HG01943.hp1
HG02970.hp1
HG02976.hp1
HG03195.hp1
HG03471.hp1
 3_prime_UTR_variant MODIFIER c.*1122T>A
c.*1122T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1122 chrX 24309740
chrX:24309741 A
A
 AAAAAAG
AAAAAAG
 1 a0001c0001t0060
a0001c0001t0060
 1 HG02559.hp2
HG02559.hp2
 3_prime_UTR_variant MODIFIER c.*1120_*1121insCTTT
others(2): Show 
c.*1120_*1121insCTTTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1120 chrX 24309741
chrX:24309741 A
A
 T
T
 3 a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
 3 HG01884.hp2
HG02965.hp1
HG06807.hp1
HG01884.hp2
HG02965.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*1121T>A
c.*1121T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1121 chrX 24309741
chrX:24309743 A
A
 AAAAG
AAAAG
 1 a0001c0001t0057
a0001c0001t0057
 1 HG03225.hp1
HG03225.hp1
 3_prime_UTR_variant MODIFIER c.*1118_*1119insCTTT
c.*1118_*1119insCTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1118 chrX 24309743
chrX:24309743 A
A
 AAG
AAG
 1 a0004c0005t0071
a0004c0005t0071
 1 HG02897.hp1
HG02897.hp1
 3_prime_UTR_variant MODIFIER c.*1118_*1119insCT
c.*1118_*1119insCT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1118 chrX 24309743
chrX:24309744 AAG
AAG
 A
A
 2 a0001c0001t0021
a0001c0001t0037
a0001c0001t0021
a0001c0001t0037
 3 HG02074.hp1
NA18987.hp2
NA19063.hp1
HG02074.hp1
NA18987.hp2
NA19063.hp1
 3_prime_UTR_variant MODIFIER c.*1116_*1117delCT
c.*1116_*1117delCT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1116 chrX 24309744
chrX:24309745 A
A
 AAG
AAG
 1 a0001c0001t0044
a0001c0001t0044
 1 HG02145.hp1
HG02145.hp1
 3_prime_UTR_variant MODIFIER c.*1116_*1117insCT
c.*1116_*1117insCT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1116 chrX 24309745
chrX:24309745 AG
AG
 A
A
 5 a0001c0001t0015
a0001c0001t0054
a0002c0003t0007
others(2): Show 
a0001c0001t0015
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
 16 HG01891.hp2
HG02451.hp2
HG02559.hp1
others(13): Show 
HG01891.hp2
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02735.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03486.hp1
HG03486.hp2
NA18906.hp2
NA19091.hp1
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*1116delC
c.*1116delC
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1116 chrX 24309745
chrX:24309746 G
G
 A
A
 13 a0001c0001t0044
a0001c0001t0057
a0001c0001t0060
others(10): Show 
a0001c0001t0044
a0001c0001t0057
a0001c0001t0060
a0001c0001t0061
a0002c0010t0028
a0003c0004t0022
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0053
a0004c0005t0071
a0006c0007t0025
a0006c0007t0063
 14 HG01884.hp2
HG01943.hp1
HG02145.hp1
others(11): Show 
HG01884.hp2
HG01943.hp1
HG02145.hp1
HG02559.hp2
HG02897.hp1
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG03195.hp1
HG03195.hp2
HG03225.hp1
HG03471.hp1
HG06807.hp1
HG06807.hp2
 3_prime_UTR_variant MODIFIER c.*1116C>T
c.*1116C>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1116 chrX 24309746
chrX:24309746 G
G
 GA
GA
 2 a0001c0001t0003
a0001c0002t0069
a0001c0001t0003
a0001c0002t0069
 13 HG01884.hp1
HG02109.hp2
HG02280.hp1
others(10): Show 
HG01884.hp1
HG02109.hp2
HG02280.hp1
HG02451.hp1
HG02615.hp1
HG02622.hp2
HG02809.hp1
HG03041.hp2
HG03139.hp1
HG03239.hp2
NA19043.hp1
NA19240.hp1
NA19240.hp2
 3_prime_UTR_variant MODIFIER c.*1115dupT
c.*1115dupT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309746
chrX:24309746 G
G
 GAA
GAA
 6 a0001c0001t0013
a0001c0001t0018
a0001c0001t0019
others(3): Show 
a0001c0001t0013
a0001c0001t0018
a0001c0001t0019
a0001c0002t0019
a0007c0009t0017
a0015c0013t0027
 10 HG01070.hp1
HG02040.hp1
HG02258.hp1
others(7): Show 
HG01070.hp1
HG02040.hp1
HG02258.hp1
HG02293.hp1
HG03041.hp1
HG03516.hp1
NA18522.hp1
NA19030.hp2
NA20905.hp1
NA21309.hp2
 3_prime_UTR_variant MODIFIER c.*1114_*1115dupTT
c.*1114_*1115dupTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309746
chrX:24309746 G
G
 GAAA
GAAA
 12 a0001c0001t0002
a0001c0001t0045
a0001c0001t0047
others(9): Show 
a0001c0001t0002
a0001c0001t0045
a0001c0001t0047
a0001c0001t0056
a0001c0001t0062
a0001c0002t0005
a0001c0002t0046
a0001c0002t0068
a0001c0002t0070
a0004c0005t0002
a0014c0014t0002
a0016c0011t0002
 42 HG00099.hp1
HG00597.hp1
HG00642.hp1
others(39): Show 
HG00099.hp1
HG00597.hp1
HG00642.hp1
HG01074.hp1
HG01109.hp1
HG01192.hp1
HG01261.hp1
HG01346.hp1
HG01891.hp1
HG01934.hp1
HG01952.hp1
HG01993.hp1
HG02071.hp1
HG02080.hp2
HG02109.hp1
HG02155.hp2
HG02486.hp1
HG02523.hp1
HG02602.hp1
HG02615.hp2
HG02723.hp1
HG02723.hp2
HG02886.hp1
HG02922.hp2
HG02970.hp2
HG03130.hp1
HG03540.hp1
HG03540.hp2
HG03579.hp1
HG03710.hp1
HG04228.hp1
NA18906.hp1
NA18942.hp1
NA18947.hp1
NA18957.hp2
NA18980.hp2
NA18992.hp2
NA19003.hp1
NA19072.hp1
NA19088.hp1
NA20129.hp2
NA20300.hp1
 3_prime_UTR_variant MODIFIER c.*1113_*1115dupTTT
c.*1113_*1115dupTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309746
chrX:24309746 G
G
 GAAAA
GAAAA
 5 a0001c0001t0006
a0001c0001t0048
a0001c0001t0065
others(2): Show 
a0001c0001t0006
a0001c0001t0048
a0001c0001t0065
a0001c0002t0020
a0004c0005t0006
 13 HG02572.hp1
HG02738.hp1
HG03098.hp1
others(10): Show 
HG02572.hp1
HG02738.hp1
HG03098.hp1
HG03209.hp1
HG03516.hp2
HG04199.hp1
NA18950.hp1
NA18987.hp1
NA19002.hp1
NA19030.hp1
NA19065.hp2
NA19077.hp1
NA19081.hp2
 3_prime_UTR_variant MODIFIER c.*1112_*1115dupTTTT
c.*1112_*1115dupTTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309746
chrX:24309746 G
G
 GAAAAA
GAAAAA
 2 a0001c0001t0058
a0001c0001t0059
a0001c0001t0058
a0001c0001t0059
 2 NA18952.hp1
NA18997.hp1
NA18952.hp1
NA18997.hp1
 3_prime_UTR_variant MODIFIER c.*1111_*1115dupTTTT
others(1): Show 
c.*1111_*1115dupTTTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309746
chrX:24309746 GA
GA
 G
G
 23 a0001c0001t0001
a0001c0001t0010
a0001c0001t0011
others(20): Show 
a0001c0001t0001
a0001c0001t0010
a0001c0001t0011
a0001c0001t0012
a0001c0001t0023
a0001c0001t0030
a0001c0001t0031
a0001c0001t0038
a0001c0001t0040
a0001c0001t0041
a0001c0001t0042
a0001c0001t0066
a0001c0001t0067
a0001c0008t0001
a0004c0005t0064
a0005c0006t0001
a0005c0006t0039
a0008c0020t0026
a0009c0012t0001
a0010c0019t0001
a0011c0018t0001
a0012c0016t0001
a0013c0015t0001
 148 HG00099.hp2
HG00280.hp1
HG00408.hp1
others(145): Show 
HG00099.hp2
HG00280.hp1
HG00408.hp1
HG00408.hp2
HG00423.hp1
HG00423.hp2
HG00544.hp1
HG00544.hp2
HG00597.hp2
HG00609.hp1
HG00621.hp1
HG00639.hp1
HG00639.hp2
HG00673.hp1
HG00738.hp1
HG00741.hp1
HG00741.hp2
HG01069.hp1
HG01070.hp2
HG01071.hp1
HG01071.hp2
HG01081.hp1
HG01081.hp2
HG01099.hp1
HG01106.hp1
HG01167.hp1
HG01175.hp1
HG01175.hp2
HG01255.hp1
HG01256.hp1
HG01258.hp1
HG01346.hp2
HG01358.hp1
HG01433.hp1
HG01515.hp1
HG01928.hp1
HG01975.hp1
HG01975.hp2
HG01978.hp1
HG01978.hp2
HG01993.hp2
HG02004.hp1
HG02004.hp2
HG02015.hp1
HG02027.hp1
HG02056.hp1
HG02080.hp1
HG02083.hp1
HG02129.hp1
HG02132.hp1
HG02148.hp1
HG02148.hp2
HG02155.hp1
HG02165.hp1
HG02165.hp2
HG02257.hp1
HG02257.hp2
HG02273.hp1
HG02293.hp2
HG02523.hp2
HG02683.hp1
HG02683.hp2
HG02886.hp2
HG03017.hp1
HG03239.hp1
HG03492.hp1
HG03654.hp1
HG03688.hp1
HG03704.hp1
HG03704.hp2
HG03834.hp1
HG03942.hp1
HG04115.hp1
HG04184.hp1
HG04184.hp2
HG04204.hp1
NA18612.hp1
NA18939.hp1
NA18939.hp2
NA18940.hp1
NA18943.hp1
NA18944.hp1
NA18945.hp1
NA18947.hp2
NA18948.hp1
NA18949.hp1
NA18949.hp2
NA18950.hp2
NA18951.hp1
NA18951.hp2
NA18953.hp1
NA18955.hp1
NA18957.hp1
NA18960.hp1
NA18961.hp1
NA18962.hp1
NA18965.hp1
NA18966.hp1
NA18967.hp1
NA18969.hp1
NA18969.hp2
NA18970.hp1
NA18971.hp1
NA18977.hp1
NA18979.hp1
NA18979.hp2
NA18980.hp1
NA18982.hp1
NA18983.hp1
NA18985.hp1
NA18988.hp1
NA18989.hp1
NA18990.hp1
NA18992.hp1
NA18995.hp1
NA18999.hp1
NA18999.hp2
NA19002.hp2
NA19003.hp2
NA19004.hp1
NA19005.hp1
NA19007.hp1
NA19009.hp1
NA19012.hp1
NA19055.hp1
NA19058.hp1
NA19060.hp1
NA19062.hp1
NA19065.hp1
NA19066.hp1
NA19068.hp1
NA19070.hp1
NA19074.hp2
NA19076.hp1
NA19077.hp2
NA19079.hp1
NA19081.hp1
NA19082.hp1
NA19083.hp1
NA19084.hp1
NA19084.hp2
NA19085.hp1
NA19089.hp1
NA19090.hp1
NA19090.hp2
NA20805.hp1
NA21309.hp1
homoSapiens_chm13v2.hp1
 3_prime_UTR_variant MODIFIER c.*1115delT
c.*1115delT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309746
chrX:24309746 GAA
GAA
 G
G
 5 a0001c0001t0004
a0001c0001t0034
a0001c0001t0035
others(2): Show 
a0001c0001t0004
a0001c0001t0034
a0001c0001t0035
a0001c0001t0036
a0001c0008t0004
 14 HG01517.hp1
HG02055.hp1
HG02135.hp1
others(11): Show 
HG01517.hp1
HG02055.hp1
HG02135.hp1
HG02273.hp2
HG02922.hp1
NA18747.hp1
NA18942.hp2
NA18981.hp1
NA18981.hp2
NA18984.hp1
NA18997.hp2
NA19056.hp1
NA19074.hp1
NA19086.hp1
 3_prime_UTR_variant MODIFIER c.*1114_*1115delTT
c.*1114_*1115delTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1114 chrX 24309746
chrX:24309746 GAAA
GAAA
 G
G
 2 a0001c0001t0014
a0001c0017t0014
a0001c0001t0014
a0001c0017t0014
 2 HG01243.hp1
HG02698.hp1
HG01243.hp1
HG02698.hp1
 3_prime_UTR_variant MODIFIER c.*1113_*1115delTTT
c.*1113_*1115delTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1113 chrX 24309746
chrX:24309746 GAAAAAAA
others(2): Show 
GAAAAAAAAA
 G
G
 1 a0001c0001t0033
a0001c0001t0033
 1 HG01517.hp2
HG01517.hp2
 3_prime_UTR_variant MODIFIER c.*1107_*1115delTTTT
others(5): Show 
c.*1107_*1115delTTTTTTTTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1107 chrX 24309746
chrX:24309747 A
A
 G
G
 2 a0001c0001t0037
a0006c0007t0063
a0001c0001t0037
a0006c0007t0063
 2 HG06807.hp2
NA19063.hp1
HG06807.hp2
NA19063.hp1
 3_prime_UTR_variant MODIFIER c.*1115T>C
c.*1115T>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309747
chrX:24309747 A
A
 T
T
 1 a0001c0001t0015
a0001c0001t0015
 2 HG02735.hp1
NA19091.hp1
HG02735.hp1
NA19091.hp1
 3_prime_UTR_variant MODIFIER c.*1115T>A
c.*1115T>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1115 chrX 24309747
chrX:24309748 A
A
 G
G
 4 a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
others(1): Show 
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
 14 HG01891.hp2
HG02451.hp2
HG02559.hp1
others(11): Show 
HG01891.hp2
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03486.hp1
HG03486.hp2
NA18906.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*1114T>C
c.*1114T>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1114 chrX 24309748
chrX:24309749 A
A
 G
G
 4 a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
others(1): Show 
a0002c0010t0028
a0003c0004t0022
a0003c0004t0053
a0006c0007t0025
 5 HG01943.hp1
HG02970.hp1
HG02976.hp1
others(2): Show 
HG01943.hp1
HG02970.hp1
HG02976.hp1
HG03195.hp1
HG03471.hp1
 3_prime_UTR_variant MODIFIER c.*1113T>C
c.*1113T>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1113 chrX 24309749
chrX:24309750 A
A
 G
G
 3 a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
 3 HG01884.hp2
HG02965.hp1
HG06807.hp1
HG01884.hp2
HG02965.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*1112T>C
c.*1112T>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1112 chrX 24309750
chrX:24309765 A
A
 AAAC
AAAC
 1 a0001c0001t0032
a0001c0001t0032
 1 HG02622.hp1
HG02622.hp1
 3_prime_UTR_variant MODIFIER c.*1096_*1097insGTT
c.*1096_*1097insGTT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1096 chrX 24309765
chrX:24309799 G
G
 A
A
 1 a0001c0001t0062
a0001c0001t0062
 1 HG03540.hp2
HG03540.hp2
 3_prime_UTR_variant MODIFIER c.*1063C>T
c.*1063C>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1063 chrX 24309799
chrX:24309844 GA
GA
 G
G
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*1017delT
c.*1017delT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 1017 chrX 24309844
chrX:24309909 TC
TC
 T
T
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*952delG
c.*952delG
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 952 chrX 24309909
chrX:24309920 C
C
 A
A
 1 a0001c0001t0011
a0001c0001t0011
 4 NA18612.hp1
NA18951.hp2
NA19074.hp2
others(1): Show 
NA18612.hp1
NA18951.hp2
NA19074.hp2
NA19084.hp1
 3_prime_UTR_variant MODIFIER c.*942G>T
c.*942G>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 942 chrX 24309920
chrX:24309924 C
C
 T
T
 5 a0003c0004t0022
a0003c0004t0050
a0003c0004t0051
others(2): Show 
a0003c0004t0022
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0053
 6 HG01884.hp2
HG02965.hp1
HG02970.hp1
others(3): Show 
HG01884.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG03471.hp1
HG06807.hp1
 3_prime_UTR_variant MODIFIER c.*938G>A
c.*938G>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 938 chrX 24309924
chrX:24310068 T
T
 C
C
 13 a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
others(10): Show 
a0001c0001t0054
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0002c0010t0028
a0003c0004t0022
a0003c0004t0050
a0003c0004t0051
a0003c0004t0052
a0003c0004t0053
a0006c0007t0025
a0006c0007t0063
a0015c0013t0027
 24 HG01884.hp2
HG01891.hp2
HG01943.hp1
others(21): Show 
HG01884.hp2
HG01891.hp2
HG01943.hp1
HG02258.hp1
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02965.hp1
HG02970.hp1
HG02976.hp1
HG02976.hp2
HG03195.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG06807.hp1
HG06807.hp2
NA18906.hp2
NA20129.hp1
NA20300.hp2
 3_prime_UTR_variant MODIFIER c.*794A>G
c.*794A>G
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 794 chrX 24310068
chrX:24310207 C
C
 T
T
 1 a0001c0001t0031
a0001c0001t0031
 1 NA18966.hp1
NA18966.hp1
 3_prime_UTR_variant MODIFIER c.*655G>A
c.*655G>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 655 chrX 24310207
chrX:24310258 G
G
 C
C
 1 a0002c0003t0029
a0002c0003t0029
 1 HG02809.hp2
HG02809.hp2
 3_prime_UTR_variant MODIFIER c.*604C>G
c.*604C>G
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 604 chrX 24310258
chrX:24310307 T
T
 A
A
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*555A>T
c.*555A>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 555 chrX 24310307
chrX:24310309 G
G
 C
C
 17 a0001c0001t0002
a0001c0001t0006
a0001c0001t0013
others(14): Show 
a0001c0001t0002
a0001c0001t0006
a0001c0001t0013
a0001c0001t0055
a0001c0001t0056
a0001c0001t0057
a0001c0001t0058
a0001c0001t0059
a0001c0001t0060
a0001c0001t0061
a0001c0001t0062
a0001c0001t0065
a0004c0005t0002
a0004c0005t0006
a0004c0005t0071
a0014c0014t0002
a0016c0011t0002
 48 HG00099.hp1
HG00642.hp1
HG01070.hp1
others(45): Show 
HG00099.hp1
HG00642.hp1
HG01070.hp1
HG01074.hp1
HG01109.hp1
HG01192.hp1
HG01346.hp1
HG01891.hp1
HG01952.hp1
HG01993.hp1
HG02040.hp1
HG02080.hp2
HG02109.hp1
HG02280.hp2
HG02559.hp2
HG02572.hp1
HG02615.hp2
HG02723.hp1
HG02886.hp1
HG02897.hp1
HG02922.hp2
HG02970.hp2
HG03041.hp1
HG03098.hp1
HG03130.hp1
HG03195.hp2
HG03209.hp1
HG03225.hp1
HG03540.hp1
HG03540.hp2
HG03579.hp1
NA18906.hp1
NA18942.hp1
NA18947.hp1
NA18950.hp1
NA18952.hp1
NA18987.hp1
NA18992.hp2
NA18997.hp1
NA19002.hp1
NA19003.hp1
NA19030.hp1
NA19065.hp2
NA19072.hp1
NA19077.hp1
NA19081.hp2
NA19088.hp1
NA20300.hp1
 3_prime_UTR_variant MODIFIER c.*553C>G
c.*553C>G
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 553 chrX 24310309
chrX:24310317 TG
TG
 T
T
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*544delC
c.*544delC
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 544 chrX 24310317
chrX:24310374 G
G
 A
A
 1 a0006c0007t0063
a0006c0007t0063
 1 HG06807.hp2
HG06807.hp2
 3_prime_UTR_variant MODIFIER c.*488C>T
c.*488C>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 488 chrX 24310374
chrX:24310423 AT
AT
 A
A
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*438delA
c.*438delA
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 438 chrX 24310423
chrX:24310607 T
T
 TA
TA
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*254dupT
c.*254dupT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 254 chrX 24310607
chrX:24310765 C
C
 CA
CA
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*96dupT
c.*96dupT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 96 chrX 24310765
chrX:24310775 G
G
 GA
GA
 1 a0004c0005t0064
a0004c0005t0064
 1 HG02056.hp1
HG02056.hp1
 3_prime_UTR_variant MODIFIER c.*86dupT
c.*86dupT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 86 chrX 24310775
chrX:24310775 GA
GA
 G
G
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*86delT
c.*86delT
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 86 chrX 24310775
chrX:24310800 A
A
 G
G
 1 a0002c0003t0009
a0002c0003t0009
 5 HG02451.hp2
HG02559.hp1
HG02976.hp2
others(2): Show 
HG02451.hp2
HG02559.hp1
HG02976.hp2
HG03486.hp1
HG03486.hp2
 3_prime_UTR_variant MODIFIER c.*62T>C
c.*62T>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 62 chrX 24310800
chrX:24310814 T
T
 TG
TG
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 3_prime_UTR_variant MODIFIER c.*47dupC
c.*47dupC
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 47 chrX 24310814
chrX:24313442 A
A
 G
G
 1 a0001c0001t0030
a0001c0001t0030
 1 HG02080.hp1
HG02080.hp1
 5_prime_UTR_variant MODIFIER c.-127T>C
c.-127T>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 127 chrX 24313442
chrX:24313537 G
G
 GC
GC
 1 a0001c0001t0065
a0001c0001t0065
 1 NA19077.hp1
NA19077.hp1
 5_prime_UTR_variant MODIFIER c.-223dupG
c.-223dupG
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 223 chrX 24313537
chrX:24313537 GCCGGGCT
others(159): Show 
GCCGGGCTTCACGTCTCTGCGGCCTGGAACAGAAGTGAGCGGGAGGGCCG
GGGTCAGCTTCTAGGCGCGTCTGGGCACCTGCCCAGAAACCTGCCCCCAG
GGAAGCGCTACCCAATCTGTTTGAGGGTTTCTGAAAACATCGGTACCTGA
GGGGTCGTCGTCGTGGC
 G
G
 1 a0008c0020t0026
a0008c0020t0026
 1 HG04204.hp1
HG04204.hp1
 5_prime_UTR_variant MODIFIER c.-388_-223del
c.-388_-223del
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 223 chrX 24313537
chrX:24313544 T
T
 G
G
 1 a0001c0001t0066
a0001c0001t0066
 1 NA18980.hp1
NA18980.hp1
 5_prime_UTR_variant MODIFIER c.-229A>C
c.-229A>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 229 chrX 24313544
chrX:24313567 A
A
 G
G
 4 a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
others(1): Show 
a0002c0003t0007
a0002c0003t0009
a0002c0003t0029
a0002c0010t0028
 14 HG01891.hp2
HG02451.hp2
HG02559.hp1
others(11): Show 
HG01891.hp2
HG02451.hp2
HG02559.hp1
HG02647.hp1
HG02717.hp1
HG02809.hp2
HG02895.hp1
HG02897.hp2
HG02976.hp2
HG03195.hp1
HG03486.hp1
HG03486.hp2
NA20129.hp1
NA20300.hp2
 5_prime_UTR_variant MODIFIER c.-252T>C
c.-252T>C
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 252 chrX 24313567
chrX:24313567 AGAAGTGA
others(324): Show 
AGAAGTGAGCGGGAGGGCCGGGGTCAGCTTCTAGGCGCGTCTGGGCACCT
GCCCAGAAACCTGCCCCCAGGGAAGCGCTACCCAATCTGTTTGAGGGTTT
CTGAAAACATCGGTACCTGAGGGGTCGTCGTCGTGGCCCGGGCTTCACGT
CTCTGCGGCCTGGAACAGAAGTGAGCGGGAGGGCCGTGGTCAGCTTCTAG
GCGCGTCTGGGCACCTGCCCAGAAACCTGCCCCCAGGGAAGCGCTACCCA
ATCTGTTTGAGGGTTTCTGAAAACATCGGTACCTGAGGGGTCGTCGTCGT
GGTCGGACTTCGCGTCTCTGCGGCCTGGAACG
 A
A
 1 a0004c0005t0071
a0004c0005t0071
 1 HG02897.hp1
HG02897.hp1
 5_prime_UTR_variant MODIFIER c.-583_-253del
c.-583_-253del
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 253 chrX 24313567
chrX:24313587 G
G
 GGGTCAGC
others(159): Show 
GGGTCAGCTTCTAGGCGCGTCTGGGCACCTGCCCAGAAACCTGCCCCCAG
GGAAGCGCTACCCAATCTGTTTGAGGGTTTCTGAAAACATCGGTACCTGA
GGGGTCGTCGTCGTGGCCCGGGCTTCACGTCTCTGCGGCCTGGAACAGAA
GTGAGCGGGAGGGCCGT
 1 a0015c0013t0027
a0015c0013t0027
 1 HG02258.hp1
HG02258.hp1
 5_prime_UTR_variant MODIFIER c.-438_-273dupACGGCC
others(160): Show 
c.-438_-273dupACGGCCCTCCCGCTCACTTCTGTTCCAGGCCGCAGA
GACGTGAAGCCCGGGCCACGACGACGACCCCTCAGGTACCGATGTTTTCA
GAAACCCTCAAACAGATTGGGTAGCGCTTCCCTGGGGGCAGGTTTCTGGG
CAGGTGCCCAGACGCGCCTAGAAGCTGACC
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 273 chrX 24313587
chrX:24313587 GGGTCAGC
others(159): Show 
GGGTCAGCTTCTAGGCGCGTCTGGGCACCTGCCCAGAAACCTGCCCCCAG
GGAAGCGCTACCCAATCTGTTTGAGGGTTTCTGAAAACATCGGTACCTGA
GGGGTCGTCGTCGTGGCCCGGGCTTCACGTCTCTGCGGCCTGGAACAGAA
GTGAGCGGGAGGGCCGT
 G
G
 2 a0001c0001t0067
a0001c0002t0068
a0001c0001t0067
a0001c0002t0068
 2 HG01081.hp1
NA18980.hp2
HG01081.hp1
NA18980.hp2
 5_prime_UTR_variant MODIFIER c.-438_-273del
c.-438_-273del
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 273 chrX 24313587
chrX:24313663 G
G
 A
A
 1 a0001c0001t0023
a0001c0001t0023
 2 NA18939.hp2
NA19085.hp1
NA18939.hp2
NA19085.hp1
 5_prime_UTR_variant MODIFIER c.-348C>T
c.-348C>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 348 chrX 24313663
chrX:24313713 ACGTCTCT
others(158): Show 
ACGTCTCTGCGGCCTGGAACAGAAGTGAGCGGGAGGGCCGTGGTCAGCTT
CTAGGCGCGTCTGGGCACCTGCCCAGAAACCTGCCCCCAGGGAAGCGCTA
CCCAATCTGTTTGAGGGTTTCTGAAAACATCGGTACCTGAGGGGTCGTCG
TCGTGGTCGGACTTCG
 A
A
 2 a0001c0002t0069
a0001c0002t0070
a0001c0002t0069
a0001c0002t0070
 2 HG02602.hp1
HG03239.hp2
HG02602.hp1
HG03239.hp2
 5_prime_UTR_variant MODIFIER c.-563_-399del
c.-563_-399del
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 399 chrX 24313713
chrX:24313918 G
G
 T
T
 1 a0006c0007t0025
a0006c0007t0025
 1 HG01943.hp1
HG01943.hp1
 5_prime_UTR_variant MODIFIER c.-603C>A
c.-603C>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 603 chrX 24313918
chrX:24313938 C
C
 A
A
 1 a0001c0001t0072
a0001c0001t0072
 1 NA20752.hp1
NA20752.hp1
 5_prime_UTR_variant MODIFIER c.-623G>T
c.-623G>T
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 623 chrX 24313938
chrX:24313973 C
C
 T
T
 1 a0001c0001t0024
a0001c0001t0024
 1 NA19075.hp1
NA19075.hp1
 5_prime_UTR_variant MODIFIER c.-658G>A
c.-658G>A
SUPT20HL2 ENSG00000223611.7 transcript ENST00000486479.3 protein_coding 1/1 658 chrX 24313973

chr:pos ref alt #
# of ghapid:genebody level
 ghapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid genebody_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos

  • GeneCards
  • OpenTarget
  • The Human Protein Atlas
  • Gnomad v4.1.0
  • PhewebJP (Japan)
  • UKB-TOPMed (UMich) (UK and US)
  • FinnGen r11 (Finland)
  • KoGES (Korean)
  • Mouse Phenotype
  • Zebra Phenotype
  • TogoVar

  • DNA
  • Satellite
  • All Snps 1.4.2
  • RC
  • snRNA
  • SINE
  • GC %
  • Simple_repeat
  • RNA
  • Retroposon
  • Unknown
  • Low_complexity
  • LINE
  • scRNA
  • CpG Islands
  • Phastcons (20 way)
  • srpRNA
  • Common Snps 1.4.2
  • rRNA
  • LTR
  • tRNA

  • Axiom Genome-Wide Array (Japonica Array V1)
  • Axiom Genome-Wide Array (Japonica Array V2)
  • Axiom Genome-Wide ASI Array V1 (ASI V1)
​

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