Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	728239
ensemblid	ENSG00000154545.17
hgncid	23793
symbol	MAGED4
name	MAGE family member D4
refseq_nuc	NM_001272063.2
refseq_prot	NP_001258992.1
ensembl_nuc	ENST00000471932.6
ensembl_prot	ENSP00000507908.1
mane_status	MANE Select
chr	chrX
start	52184888
end	52192268
strand	+
ver	v1.2
region	chrX:52184888-52192268
region5000	chrX:52179888-52197268
regionname0	MAGED4_chrX_52184888_52192268
regionname5000	MAGED4_chrX_52179888_52197268

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	741	199	50	42	85	4	18	62	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0002	0/0	418	6	1	2	1	0	2	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0003	0/0	741	4	3	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0004	0/0	741	3	0	0	3	0	0	3	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0005	0/0	15	1	0	0	1	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0006	0/0	381	1	0	0	1	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0007	0/0	741	1	0	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0008	0/0	631	1	0	0	1	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0009	0/0	418	1	0	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0010	0/0	233	1	0	0	1	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0011	0/0	133	1	0	0	0	0	1	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0012	0/0	741	1	1	0	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	2226	191	43	42	85	4	17	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0002	0/0	2226	5	5	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0003	0/0	2227	4	1	1	0	0	2	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0004	0/0	2226	4	3	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0005	0/0	2226	3	0	0	3	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0006	0/0	2231	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0007	0/0	2227	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0008	0/0	2226	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0009	0/0	2227	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0010	0/0	2226	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0011	0/0	2226	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0012	0/0	2226	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0013	0/0	2225	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0014	0/0	2227	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0015	0/0	2227	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0016	0/0	2226	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0017	0/0	2226	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
c0018	0/0	2234	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	312	213	53	46	91	4	19	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
t0002	0/0	314	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
t0003	0/0	312	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
t0004	0/0	313	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
t0005	0/0	312	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
t0006	0/0	312	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
t0007	0/0	312	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
t0008	0/0	312	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	78	22	9	41	2	4	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0002	0/0	57	8	16	26	1	6	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0003	0/0	8	0	1	5	0	2	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0004	0/0	6	1	4	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0005	0/0	5	0	0	3	0	2	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0006	0/0	4	0	4	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0007	0/0	4	3	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0008	0/0	4	0	4	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0009	0/0	2	2	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0010	0/0	2	2	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0011	0/0	2	0	0	2	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0012	0/0	2	0	0	2	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0013	0/0	2	2	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0014	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0015	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0016	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0017	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0018	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0019	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0020	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0021	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0022	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0023	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0024	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0025	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0026	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0027	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0028	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0029	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0030	0/0	1	0	0	0	1	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0031	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0032	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0033	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0034	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0035	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0036	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0037	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0038	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0039	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0040	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0041	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0042	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0043	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0044	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0045	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0046	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0047	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0048	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0049	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0050	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0051	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0052	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0053	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0054	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0055	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0056	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
g0057	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	2226	191	43	42	85	4	17	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0002	0/0	2226	5	5	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0008	0/0	2226	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0012	0/0	2226	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0017	0/0	2226	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0002c0003	0/0	2227	4	1	1	0	0	2	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0002c0009	0/0	2227	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0002c0010	0/0	2226	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0003c0004	0/0	2226	4	3	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0004c0005	0/0	2226	3	0	0	3	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0005c0006	0/0	2231	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0006c0018	0/0	2234	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0007c0011	0/0	2226	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0008c0013	0/0	2225	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0009c0014	0/0	2227	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0010c0015	0/0	2227	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0011c0007	0/0	2227	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0012c0016	0/0	2226	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	2537	186	41	42	84	4	15	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0001t0003	0/0	2537	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0001t0004	0/0	2538	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0001t0005	0/0	2537	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0001t0006	0/0	2537	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0001t0007	0/0	2537	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0002t0001	0/0	2537	5	5	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0008t0001	0/0	2537	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0012t0001	0/0	2537	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0001c0017t0001	0/0	2537	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0002c0003t0001	0/0	2538	4	1	1	0	0	2	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0002c0009t0001	0/0	2538	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0002c0010t0001	0/0	2537	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0003c0004t0001	0/0	2537	4	3	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0004c0005t0001	0/0	2537	3	0	0	3	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0005c0006t0008	0/0	2542	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0006c0018t0002	0/0	2547	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0007c0011t0001	0/0	2537	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0008c0013t0001	0/0	2536	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0009c0014t0001	0/0	2538	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0010c0015t0001	0/0	2538	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0011c0007t0001	0/0	2538	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268
a0012c0016t0001	0/0	2537	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	copy fasta	chrX	52179888	52197268

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	72	21	9	37	2	3	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0002	0/0	52	7	15	24	1	5	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0003	0/0	8	0	1	5	0	2	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0004	0/0	4	0	3	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0005	0/0	4	0	0	3	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0006	0/0	4	0	4	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0007	0/0	2	1	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0008	0/0	4	0	4	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0010	0/0	2	2	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0011	0/0	2	0	0	2	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0012	0/0	2	0	0	2	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0013	0/0	2	2	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0023	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0024	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0027	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0028	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0029	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0030	0/0	1	0	0	0	1	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0031	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0032	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0035	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0036	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0037	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0039	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0040	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0042	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0043	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0044	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0045	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0046	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0047	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0048	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0050	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0053	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0054	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0055	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0001g0057	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0003g0034	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0004g0001	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0005g0005	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0006g0001	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0001t0007g0056	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0002t0001g0009	0/0	2	2	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0002t0001g0020	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0002t0001g0021	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0002t0001g0022	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0008t0001g0015	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0012t0001g0049	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0001c0017t0001g0001	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0002c0003t0001g0002	0/0	2	1	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0002c0003t0001g0026	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0002c0003t0001g0041	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0002c0009t0001g0001	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0002c0010t0001g0018	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0003c0004t0001g0004	0/0	2	1	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0003c0004t0001g0007	0/0	2	2	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0004c0005t0001g0001	0/0	2	0	0	2	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0004c0005t0001g0002	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0005c0006t0008g0014	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0006c0018t0002g0016	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0007c0011t0001g0002	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0008c0013t0001g0051	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0009c0014t0001g0002	0/0	1	0	1	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0010c0015t0001g0019	0/0	1	0	0	1	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0011c0007t0001g0052	0/0	1	0	0	0	0	1	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
a0012c0016t0001g0038	0/0	1	1	0	0	0	0	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00408	hp1	a0001	c0001	t0001	g0005	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00438	hp1	a0001	c0001	t0001	g0002	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00438	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00558	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00597	hp1	a0001	c0001	t0001	g0002	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00597	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00609	hp1	a0001	c0001	t0001	g0005	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00621	hp1	a0001	c0001	t0001	g0025	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00639	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00639	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00735	hp1	a0009	c0014	t0001	g0002	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00735	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00738	hp1	a0002	c0010	t0001	g0018	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG00741	hp2	a0001	c0001	t0001	g0040	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01070	hp1	a0001	c0001	t0001	g0008	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01070	hp2	a0001	c0001	t0001	g0004	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01071	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01071	hp2	a0001	c0001	t0001	g0006	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01081	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01081	hp2	a0001	c0001	t0001	g0007	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01099	hp1	a0001	c0001	t0001	g0004	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01106	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01175	hp2	a0001	c0001	t0001	g0004	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01192	hp1	a0001	c0001	t0001	g0027	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01243	hp1	a0003	c0004	t0001	g0004	AMR	PUR	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01255	hp1	a0001	c0001	t0001	g0039	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01257	hp2	a0001	c0001	t0001	g0045	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01261	hp1	a0002	c0003	t0001	g0026	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01346	hp1	a0001	c0001	t0001	g0003	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01433	hp1	a0001	c0001	t0001	g0036	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01496	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01496	hp2	a0001	c0001	t0001	g0002	AMR	CLM	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01515	hp1	a0001	c0001	t0001	g0030	EUR	IBS	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01884	hp1	a0001	c0002	t0001	g0009	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01884	hp2	a0001	c0001	t0003	g0034	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01891	hp1	a0003	c0004	t0001	g0007	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01891	hp2	a0001	c0001	t0001	g0035	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01928	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01934	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01943	hp1	a0001	c0001	t0001	g0008	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01978	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01978	hp2	a0001	c0001	t0001	g0006	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01981	hp1	a0001	c0001	t0001	g0008	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG01981	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02004	hp1	a0001	c0001	t0001	g0008	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02004	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02055	hp1	a0001	c0001	t0001	g0002	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02071	hp1	a0001	c0001	t0001	g0055	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02074	hp1	a0001	c0001	t0001	g0002	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02080	hp1	a0001	c0001	t0001	g0002	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02080	hp2	a0001	c0001	t0001	g0002	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02083	hp1	a0001	c0001	t0001	g0002	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02135	hp1	a0007	c0011	t0001	g0002	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02145	hp1	a0002	c0003	t0001	g0002	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02148	hp1	a0001	c0001	t0001	g0006	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02148	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02258	hp1	a0001	c0008	t0001	g0015	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02273	hp1	a0001	c0001	t0001	g0006	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02273	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02523	hp2	a0001	c0001	t0001	g0003	EAS	KHV	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02572	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02602	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02622	hp2	a0001	c0002	t0001	g0021	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02630	hp1	a0001	c0001	t0001	g0013	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02630	hp2	a0001	c0001	t0007	g0056	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02647	hp1	a0001	c0001	t0001	g0029	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02683	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02683	hp2	a0001	c0001	t0001	g0003	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02698	hp1	a0001	c0001	t0001	g0037	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02735	hp1	a0001	c0001	t0001	g0044	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02738	hp1	a0002	c0003	t0001	g0002	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02809	hp1	a0001	c0002	t0001	g0020	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02809	hp2	a0001	c0001	t0001	g0010	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02886	hp2	a0001	c0001	t0001	g0057	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02895	hp1	a0003	c0004	t0001	g0004	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02897	hp1	a0001	c0001	t0001	g0043	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02897	hp2	a0001	c0001	t0001	g0002	AFR	GWD	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02922	hp1	a0001	c0017	t0001	g0001	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02976	hp2	a0001	c0001	t0001	g0013	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03195	hp1	a0001	c0001	t0001	g0023	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03195	hp2	a0001	c0001	t0001	g0054	AFR	ESN	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03209	hp1	a0001	c0001	t0001	g0002	AFR	MSL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03225	hp1	a0001	c0001	t0001	g0007	AFR	MSL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03239	hp1	a0001	c0001	t0001	g0005	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03239	hp2	a0001	c0001	t0001	g0031	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03486	hp1	a0001	c0001	t0001	g0002	AFR	MSL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03486	hp2	a0001	c0001	t0001	g0002	AFR	MSL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03654	hp1	a0011	c0007	t0001	g0052	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03704	hp2	a0001	c0012	t0001	g0049	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03710	hp1	a0001	c0001	t0001	g0003	SAS	PJL	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03831	hp1	a0001	c0001	t0001	g0002	SAS	BEB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03831	hp2	a0002	c0003	t0001	g0041	SAS	BEB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG03942	hp1	a0001	c0001	t0006	g0001	SAS	BEB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG04115	hp1	a0001	c0001	t0005	g0005	SAS	STU	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG04184	hp1	a0001	c0001	t0001	g0002	SAS	BEB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG04184	hp2	a0001	c0001	t0001	g0028	SAS	BEB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG04204	hp1	a0001	c0001	t0001	g0002	SAS	STU	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18612	hp1	a0001	c0001	t0001	g0002	EAS	CHB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18940	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18944	hp1	a0001	c0001	t0001	g0046	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18945	hp1	a0004	c0005	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18946	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18946	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18948	hp1	a0001	c0001	t0001	g0053	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18960	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18961	hp1	a0002	c0009	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18965	hp1	a0005	c0006	t0008	g0014	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18966	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18967	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18971	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18974	hp1	a0001	c0001	t0001	g0042	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18977	hp1	a0001	c0001	t0004	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18980	hp1	a0001	c0001	t0001	g0033	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18980	hp2	a0004	c0005	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18982	hp1	a0006	c0018	t0002	g0016	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18988	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18990	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18994	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18995	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18999	hp2	a0001	c0001	t0001	g0012	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19000	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19004	hp1	a0001	c0001	t0001	g0048	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19005	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19006	hp1	a0010	c0015	t0001	g0019	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19009	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19010	hp1	a0001	c0001	t0001	g0032	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19011	hp2	a0004	c0005	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19012	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19030	hp1	a0001	c0002	t0001	g0022	AFR	LWK	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19030	hp2	a0001	c0001	t0001	g0002	AFR	LWK	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19055	hp1	a0001	c0001	t0001	g0017	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19062	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19065	hp2	a0001	c0001	t0001	g0011	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19066	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19067	hp1	a0001	c0001	t0001	g0012	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19076	hp1	a0008	c0013	t0001	g0051	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19079	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19081	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19082	hp1	a0001	c0001	t0001	g0050	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19089	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19090	hp1	a0001	c0001	t0001	g0005	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19090	hp2	a0001	c0001	t0001	g0011	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA20129	hp1	a0001	c0001	t0001	g0024	AFR	ASW	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA20129	hp2	a0012	c0016	t0001	g0038	AFR	ASW	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA20752	hp1	a0001	c0001	t0001	g0002	EUR	TSI	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02109	hp2	a0003	c0004	t0001	g0007	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG02486	hp1	a0001	c0002	t0001	g0009	AFR	ACB	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG06807	hp1	a0001	c0001	t0001	g0010	AFR	USA	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
HG06807	hp2	a0001	c0001	t0001	g0001	AFR	USA	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA21309	hp1	a0001	c0001	t0001	g0001	AFR	LWK	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268
NA21309	hp2	a0001	c0001	t0001	g0047	AFR	LWK	MAGED4_chrX_52179888_52197268	MAGED4	chrX	52179888	52197268

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:52185947	C C	CA CA	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.27dupA c.27dupA	p.Ser10fs p.Ser10fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/13	137/2537	28/2226	10/741	INFO_REALIGN_3_PRIME	chrX	52185947
chrX:52185953	GA GA	G G	1	a0006 a0006	1	NA18982.hp1 NA18982.hp1	frameshift_variant	HIGH	c.34delA c.34delA	p.Ser12fs p.Ser12fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/13	143/2537	34/2226	12/741	INFO_REALIGN_3_PRIME	chrX	52185953
chrX:52185997	C C	CG CG	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.79dupG c.79dupG	p.Glu27fs p.Glu27fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/13	189/2537	80/2226	27/741	INFO_REALIGN_3_PRIME	chrX	52185997
chrX:52185997	C C	CT CT	1	a0006 a0006	1	NA18982.hp1 NA18982.hp1	frameshift_variant	HIGH	c.75_76insT c.75_76insT	p.Gly26fs p.Gly26fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/13	185/2537	76/2226	26/741		chrX	52185997
chrX:52186449	C C	T T	1	a0012 a0012	1	NA20129.hp2 NA20129.hp2	missense_variant	MODERATE	c.263C>T c.263C>T	p.Ala88Val p.Ala88Val	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	372/2537	263/2226	88/741		chrX	52186449
chrX:52186525	CA CA	C C	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.341delA c.341delA	p.Asn114fs p.Asn114fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	450/2537	341/2226	114/741	INFO_REALIGN_3_PRIME	chrX	52186525
chrX:52186547	G G	GC GC	1	a0011 a0011	1	HG03654.hp1 HG03654.hp1	frameshift_variant	HIGH	c.363dupC c.363dupC	p.Ala122fs p.Ala122fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	473/2537	364/2226	122/741	INFO_REALIGN_3_PRIME	chrX	52186547
chrX:52186656	A A	AG AG	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.474dupG c.474dupG	p.Pro159fs p.Pro159fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	584/2537	475/2226	159/741	INFO_REALIGN_3_PRIME	chrX	52186656
chrX:52186745	AC AC	A A	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.561delC c.561delC	p.Ser188fs p.Ser188fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	670/2537	561/2226	187/741	INFO_REALIGN_3_PRIME	chrX	52186745
chrX:52186775	G G	GC GC	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.592dupC c.592dupC	p.Gln198fs p.Gln198fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	702/2537	593/2226	198/741	INFO_REALIGN_3_PRIME	chrX	52186775
chrX:52186798	C C	CCCTAGTA others(1): Show CCCTAGTAG	1	a0006 a0006	1	NA18982.hp1 NA18982.hp1	frameshift_variant	HIGH	c.614_621dupCTAGTAGC c.614_621dupCTAGTAGC	p.Ala208fs p.Ala208fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	731/2537	622/2226	208/741	INFO_REALIGN_3_PRIME	chrX	52186798
chrX:52186838	A A	AG AG	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.655dupG c.655dupG	p.Glu219fs p.Glu219fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	765/2537	656/2226	219/741	INFO_REALIGN_3_PRIME	chrX	52186838
chrX:52186845	T T	TG TG	1	a0010 a0010	1	NA19006.hp1 NA19006.hp1	frameshift_variant	HIGH	c.661dupG c.661dupG	p.Asp221fs p.Asp221fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	771/2537	662/2226	221/741	INFO_REALIGN_3_PRIME	chrX	52186845
chrX:52186938	G G	GC GC	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.756dupC c.756dupC	p.Lys253fs p.Lys253fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	866/2537	757/2226	253/741	INFO_REALIGN_3_PRIME	chrX	52186938
chrX:52186970	G G	GC GC	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.786dupC c.786dupC	p.Thr263fs p.Thr263fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	896/2537	787/2226	263/741	INFO_REALIGN_3_PRIME	chrX	52186970
chrX:52187041	GC GC	G G	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.858delC c.858delC	p.Lys287fs p.Lys287fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	967/2537	858/2226	286/741	INFO_REALIGN_3_PRIME	chrX	52187041
chrX:52187081	C C	CG CG	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.897dupG c.897dupG	p.Trp300fs p.Trp300fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	1007/2537	898/2226	300/741	INFO_REALIGN_3_PRIME	chrX	52187081
chrX:52187227	GA GA	G G	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant&splice_region_variant	HIGH	c.1043delA c.1043delA	p.Lys348fs p.Lys348fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	1152/2537	1043/2226	348/741	INFO_REALIGN_3_PRIME	chrX	52187227
chrX:52187700	T T	TC TC	1	a0009 a0009	1	HG00735.hp1 HG00735.hp1	frameshift_variant	HIGH	c.1106dupC c.1106dupC	p.Pro370fs p.Pro370fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1216/2537	1107/2226	369/741	INFO_REALIGN_3_PRIME	chrX	52187700
chrX:52187757	C C	CA CA	1	a0005 a0005	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.1160_1161insA c.1160_1161insA	p.Arg388fs p.Arg388fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1270/2537	1161/2226	387/741		chrX	52187757
chrX:52187812	G G	GC GC	1	a0002 a0002	6	HG00738.hp1 HG01261.hp1 HG02145.hp1 others(3): Show HG00738.hp1 HG01261.hp1 HG02145.hp1 HG02738.hp1 HG03831.hp2 NA18961.hp1	frameshift_variant	HIGH	c.1222dupC c.1222dupC	p.Arg408fs p.Arg408fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1332/2537	1223/2226	408/741	INFO_REALIGN_3_PRIME	chrX	52187812
chrX:52188217	G G	A A	2	a0002 a0004 a0002 a0004	4	NA18945.hp1 NA18961.hp1 NA18980.hp2 others(1): Show NA18945.hp1 NA18961.hp1 NA18980.hp2 NA19011.hp2	missense_variant	MODERATE	c.1324G>A c.1324G>A	p.Asp442Asn p.Asp442Asn	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	6/13	1433/2537	1324/2226	442/741		chrX	52188217
chrX:52189588	G G	A A	1	a0007 a0007	1	HG02135.hp1 HG02135.hp1	missense_variant	MODERATE	c.1601G>A c.1601G>A	p.Arg534His p.Arg534His	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/13	1710/2537	1601/2226	534/741		chrX	52189588
chrX:52191444	A A	AC AC	1	a0002 a0002	1	HG00738.hp1 HG00738.hp1	frameshift_variant	HIGH	c.1804dupC c.1804dupC	p.Arg602fs p.Arg602fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	1914/2537	1805/2226	602/741	INFO_REALIGN_3_PRIME	chrX	52191444
chrX:52191444	AC AC	A A	2	a0006 a0008 a0006 a0008	2	NA18982.hp1 NA19076.hp1 NA18982.hp1 NA19076.hp1	frameshift_variant	HIGH	c.1804delC c.1804delC	p.Arg602fs p.Arg602fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	1913/2537	1804/2226	602/741	INFO_REALIGN_3_PRIME	chrX	52191444
chrX:52191559	CG CG	C C	1	a0002 a0002	1	HG00738.hp1 HG00738.hp1	frameshift_variant	HIGH	c.1918delG c.1918delG	p.Asp640fs p.Asp640fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2027/2537	1918/2226	640/741	INFO_REALIGN_3_PRIME	chrX	52191559
chrX:52191669	CT CT	C C	1	a0002 a0002	1	HG00738.hp1 HG00738.hp1	frameshift_variant	HIGH	c.2027delT c.2027delT	p.Phe676fs p.Phe676fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2136/2537	2027/2226	676/741	INFO_REALIGN_3_PRIME	chrX	52191669
chrX:52191742	C C	CG CG	1	a0006 a0006	1	NA18982.hp1 NA18982.hp1	frameshift_variant	HIGH	c.2098dupG c.2098dupG	p.Val700fs p.Val700fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2208/2537	2099/2226	700/741	INFO_REALIGN_3_PRIME	chrX	52191742
chrX:52191828	C C	G G	1	a0003 a0003	4	HG01243.hp1 HG01891.hp1 HG02109.hp2 others(1): Show HG01243.hp1 HG01891.hp1 HG02109.hp2 HG02895.hp1	missense_variant	MODERATE	c.2183C>G c.2183C>G	p.Ala728Gly p.Ala728Gly	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2292/2537	2183/2226	728/741		chrX	52191828

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:52186090	C C	G G	1	a0001c0017 a0001c0017	1	HG02922.hp1 HG02922.hp1	synonymous_variant	LOW	c.168C>G c.168C>G	p.Leu56Leu p.Leu56Leu	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/13	277/2537	168/2226	56/741	chrX	52186090
chrX:52187737	G G	A A	1	a0001c0008 a0001c0008	1	HG02258.hp1 HG02258.hp1	synonymous_variant	LOW	c.1140G>A c.1140G>A	p.Thr380Thr p.Thr380Thr	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1249/2537	1140/2226	380/741	chrX	52187737
chrX:52187815	C C	A A	1	a0001c0002 a0001c0002	5	HG01884.hp1 HG02486.hp1 HG02622.hp2 others(2): Show HG01884.hp1 HG02486.hp1 HG02622.hp2 HG02809.hp1 NA19030.hp1	synonymous_variant	LOW	c.1218C>A c.1218C>A	p.Pro406Pro p.Pro406Pro	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1327/2537	1218/2226	406/741	chrX	52187815
chrX:52191646	T T	C C	1	a0001c0012 a0001c0012	1	HG03704.hp2 HG03704.hp2	synonymous_variant	LOW	c.2001T>C c.2001T>C	p.Asp667Asp p.Asp667Asp	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2110/2537	2001/2226	667/741	chrX	52191646

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:52184919	CG CG	C C	1	a0005c0006t0008 a0005c0006t0008	1	NA18965.hp1 NA18965.hp1	5_prime_UTR_variant	MODIFIER	c.-74delG c.-74delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/13	1000	INFO_REALIGN_3_PRIME	chrX	52184919
chrX:52184931	T T	TG TG	1	a0005c0006t0008 a0005c0006t0008	1	NA18965.hp1 NA18965.hp1	5_prime_UTR_variant	MODIFIER	c.-65dupG c.-65dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/13	990	INFO_REALIGN_3_PRIME	chrX	52184931
chrX:52185914	A A	AC AC	1	a0006c0018t0002 a0006c0018t0002	1	NA18982.hp1 NA18982.hp1	5_prime_UTR_variant	MODIFIER	c.-6dupC c.-6dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/13	5	INFO_REALIGN_3_PRIME	chrX	52185914
chrX:52192077	C C	T T	1	a0001c0001t0007 a0001c0001t0007	1	HG02630.hp2 HG02630.hp2	3_prime_UTR_variant	MODIFIER	c.11C>T c.11C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	13/13	11		chrX	52192077
chrX:52192078	G G	A A	1	a0001c0001t0003 a0001c0001t0003	1	HG01884.hp2 HG01884.hp2	3_prime_UTR_variant	MODIFIER	c.12G>A c.12G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	13/13	12		chrX	52192078
chrX:52192131	A A	AC AC	1	a0001c0001t0004 a0001c0001t0004	1	NA18977.hp1 NA18977.hp1	3_prime_UTR_variant	MODIFIER	c.68dupC c.68dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	13/13	69	INFO_REALIGN_3_PRIME	chrX	52192131
chrX:52192158	G G	A A	1	a0001c0001t0005 a0001c0001t0005	1	HG04115.hp1 HG04115.hp1	3_prime_UTR_variant	MODIFIER	c.92G>A c.92G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	13/13	92		chrX	52192158
chrX:52192159	G G	GA GA	1	a0006c0018t0002 a0006c0018t0002	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.94dupA c.94dupA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	13/13	95	INFO_REALIGN_3_PRIME	chrX	52192159
chrX:52192226	T T	C C	1	a0001c0001t0006 a0001c0001t0006	1	HG03942.hp1 HG03942.hp1	3_prime_UTR_variant	MODIFIER	c.160T>C c.160T>C	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	13/13	160		chrX	52192226

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:52184977	GC GC	G G	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+16delC c.-32+16delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52184977
chrX:52185017	C C	G G	2	a0001c0001t0001g0057 a0001c0001t0007g0056 a0001c0001t0001g0057 a0001c0001t0007g0056	2	HG02630.hp2 HG02886.hp2 HG02630.hp2 HG02886.hp2	intron_variant	MODIFIER	c.-32+52C>G c.-32+52C>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185017
chrX:52185026	C C	T T	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+61C>T c.-32+61C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185026
chrX:52185027	T T	C C	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+62T>C c.-32+62T>C	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185027
chrX:52185120	AC AC	A A	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+158delC c.-32+158delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185120
chrX:52185157	GC GC	G G	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+195delC c.-32+195delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185157
chrX:52185220	G G	A A	1	a0001c0008t0001g0015 a0001c0008t0001g0015	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-32+255G>A c.-32+255G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185220
chrX:52185232	C C	CA CA	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.-32+267_-32+268ins others(1): Show c.-32+267_-32+268insA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185232
chrX:52185255	G G	GC GC	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+290_-32+291ins others(1): Show c.-32+290_-32+291insC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185255
chrX:52185346	A A	AG AG	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+383dupG c.-32+383dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185346
chrX:52185384	G G	GC GC	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.-32+423dupC c.-32+423dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185384
chrX:52185384	GC GC	G G	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-32+423delC c.-32+423delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185384
chrX:52185385	C C	A A	1	a0001c0001t0007g0056 a0001c0001t0007g0056	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.-32+420C>A c.-32+420C>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185385
chrX:52185408	A A	AC AC	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.-32+445dupC c.-32+445dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185408
chrX:52185413	GC GC	G G	2	a0001c0001t0001g0017 a0005c0006t0008g0014 a0001c0001t0001g0017 a0005c0006t0008g0014	2	NA18965.hp1 NA19055.hp1 NA18965.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-32+450delC c.-32+450delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185413
chrX:52185546	T T	C C	1	a0002c0010t0001g0018 a0002c0010t0001g0018	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.-31-346T>C c.-31-346T>C	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185546
chrX:52185632	GC GC	G G	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-31-258delC c.-31-258delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185632
chrX:52185696	TG TG	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-31-193delG c.-31-193delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185696
chrX:52185711	AC AC	A A	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-31-179delC c.-31-179delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185711
chrX:52185744	T T	TC TC	1	a0010c0015t0001g0019 a0010c0015t0001g0019	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-31-141dupC c.-31-141dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185744
chrX:52185744	T T	TCC TCC	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.-31-142_-31-141dup others(2): Show c.-31-142_-31-141dupCC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185744
chrX:52185757	T T	TC TC	1	a0001c0002t0001g0022 a0001c0002t0001g0022	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-31-133dupC c.-31-133dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185757
chrX:52185757	T T	TCC TCC	2	a0001c0002t0001g0009 a0001c0002t0001g0021 a0001c0002t0001g0009 a0001c0002t0001g0021	3	HG01884.hp1 HG02486.hp1 HG02622.hp2 HG01884.hp1 HG02486.hp1 HG02622.hp2	intron_variant	MODIFIER	c.-31-134_-31-133dup others(2): Show c.-31-134_-31-133dupCC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185757
chrX:52185757	T T	TCCC TCCC	1	a0001c0002t0001g0020 a0001c0002t0001g0020	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.-31-133_-31-132ins others(3): Show c.-31-133_-31-132insCCC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185757
chrX:52185759	CT CT	C C	1	a0001c0008t0001g0015 a0001c0008t0001g0015	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-31-132delT c.-31-132delT	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185759
chrX:52185760	T T	C C	4	a0001c0002t0001g0009 a0001c0002t0001g0020 a0001c0002t0001g0021 others(1): Show a0001c0002t0001g0009 a0001c0002t0001g0020 a0001c0002t0001g0021 a0001c0002t0001g0022	5	HG01884.hp1 HG02486.hp1 HG02622.hp2 others(2): Show HG01884.hp1 HG02486.hp1 HG02622.hp2 HG02809.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-31-132T>C c.-31-132T>C	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185760
chrX:52185760	T T	TC TC	30	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 others(27): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0003g0034 a0001c0001t0005g0005 a0002c0003t0001g0002 a0002c0003t0001g0041 a0002c0010t0001g0018 a0003c0004t0001g0007 a0004c0005t0001g0002 a0006c0018t0002g0016 a0007c0011t0001g0002 a0009c0014t0001g0002 a0012c0016t0001g0038	91	HG00408.hp1 HG00438.hp1 HG00438.hp2 others(88): Show HG00408.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp1 HG00639.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01192.hp1 HG01255.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG02004.hp2 HG02055.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02273.hp1 HG02273.hp2 HG02602.hp1 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG02809.hp2 HG02897.hp1 HG02897.hp2 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03831.hp1 HG03831.hp2 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG06807.hp1 NA18612.hp1 NA18946.hp1 NA18946.hp2 NA18960.hp1 NA18966.hp1 NA18967.hp1 NA18971.hp1 NA18974.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18988.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19010.hp1 NA19030.hp2 NA19062.hp1 NA19079.hp1 NA19089.hp1 NA19090.hp1 NA20129.hp2 NA20752.hp1	intron_variant	MODIFIER	c.-31-122dupC c.-31-122dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185760
chrX:52185760	T T	TCC TCC	2	a0001c0001t0001g0025 a0002c0003t0001g0026 a0001c0001t0001g0025 a0002c0003t0001g0026	2	HG00621.hp1 HG01261.hp1 HG00621.hp1 HG01261.hp1	intron_variant	MODIFIER	c.-31-123_-31-122dup others(2): Show c.-31-123_-31-122dupCC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185760
chrX:52185760	T T	TCCC TCCC	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-31-124_-31-122dup others(3): Show c.-31-124_-31-122dupCCC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185760
chrX:52185760	T T	TCCCC TCCCC	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	HG03195.hp1 HG03195.hp1	intron_variant	MODIFIER	c.-31-125_-31-122dup others(4): Show c.-31-125_-31-122dupCCCC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185760
chrX:52185760	TC TC	T T	2	a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0053 a0001c0001t0001g0054	2	HG03195.hp2 NA18948.hp1 HG03195.hp2 NA18948.hp1	intron_variant	MODIFIER	c.-31-122delC c.-31-122delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185760
chrX:52185768	C C	G G	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-31-124C>G c.-31-124C>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12		chrX	52185768
chrX:52185813	G G	GC GC	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.-31-75dupC c.-31-75dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185813
chrX:52185840	T T	TC TC	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.-31-49dupC c.-31-49dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185840
chrX:52185854	G G	GC GC	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.-31-33dupC c.-31-33dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185854
chrX:52185860	T T	TCC TCC	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-31-28_-31-27dupCC c.-31-28_-31-27dupCC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	52185860
chrX:52186181	A A	G G	2	a0001c0001t0001g0013 a0002c0010t0001g0018 a0001c0001t0001g0013 a0002c0010t0001g0018	3	HG00738.hp1 HG02630.hp1 HG02976.hp2 HG00738.hp1 HG02630.hp1 HG02976.hp2	intron_variant	MODIFIER	c.210+49A>G c.210+49A>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/12		chrX	52186181
chrX:52186182	T T	TG TG	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.210+55dupG c.210+55dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	52186182
chrX:52186195	A A	AG AG	5	a0001c0001t0001g0027 a0001c0001t0001g0042 a0001c0001t0001g0043 others(2): Show a0001c0001t0001g0027 a0001c0001t0001g0042 a0001c0001t0001g0043 a0002c0003t0001g0026 a0006c0018t0002g0016	5	HG01192.hp1 HG01261.hp1 HG02897.hp1 others(2): Show HG01192.hp1 HG01261.hp1 HG02897.hp1 NA18974.hp1 NA18982.hp1	intron_variant	MODIFIER	c.210+69dupG c.210+69dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	52186195
chrX:52186276	TG TG	T T	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.211-118delG c.211-118delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	52186276
chrX:52186338	TA TA	T T	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.211-57delA c.211-57delA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	52186338
chrX:52186369	TC TC	T T	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.211-24delC c.211-24delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	52186369
chrX:52186388	GC GC	G G	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	splice_region_variant&intron_variant	LOW	c.211-7delC c.211-7delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	52186388
chrX:52187244	GC GC	G G	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1044+19delC c.1044+19delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/12	INFO_REALIGN_3_PRIME	chrX	52187244
chrX:52187290	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	NA18999.hp2 NA19067.hp1 NA18999.hp2 NA19067.hp1	intron_variant	MODIFIER	c.1044+60C>T c.1044+60C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/12		chrX	52187290
chrX:52187380	TC TC	T T	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1044+154delC c.1044+154delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/12	INFO_REALIGN_3_PRIME	chrX	52187380
chrX:52187929	G G	A A	2	a0001c0001t0001g0028 a0001c0001t0001g0044 a0001c0001t0001g0028 a0001c0001t0001g0044	2	HG02735.hp1 HG04184.hp2 HG02735.hp1 HG04184.hp2	intron_variant	MODIFIER	c.1249-20G>A c.1249-20G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/12		chrX	52187929
chrX:52188187	A A	AC AC	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1313-18dupC c.1313-18dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	5/12	INFO_REALIGN_3_PRIME	chrX	52188187
chrX:52188312	T T	TG TG	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1392+32dupG c.1392+32dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	6/12	INFO_REALIGN_3_PRIME	chrX	52188312
chrX:52188338	G G	A A	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	NA19065.hp2 NA19090.hp2 NA19065.hp2 NA19090.hp2	intron_variant	MODIFIER	c.1392+53G>A c.1392+53G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	6/12		chrX	52188338
chrX:52188389	TC TC	T T	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1392+106delC c.1392+106delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	6/12	INFO_REALIGN_3_PRIME	chrX	52188389
chrX:52188528	A A	AAG AAG	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1393-146_1393-145i others(4): Show c.1393-146_1393-145insAG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	6/12		chrX	52188528
chrX:52188537	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.1393-137G>A c.1393-137G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	6/12		chrX	52188537
chrX:52188799	G G	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG02809.hp2 HG06807.hp1 HG02809.hp2 HG06807.hp1	intron_variant	MODIFIER	c.1484+34G>A c.1484+34G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12		chrX	52188799
chrX:52188822	AC AC	A A	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1484+61delC c.1484+61delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12	INFO_REALIGN_3_PRIME	chrX	52188822
chrX:52188856	TGCGGC TGCGGC	T T	2	a0001c0001t0001g0029 a0001c0001t0001g0054 a0001c0001t0001g0029 a0001c0001t0001g0054	2	HG02647.hp1 HG03195.hp2 HG02647.hp1 HG03195.hp2	intron_variant	MODIFIER	c.1484+94_1484+98del others(5): Show c.1484+94_1484+98delGGCGC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12	INFO_REALIGN_3_PRIME	chrX	52188856
chrX:52188866	C C	G G	19	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 others(16): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0043 a0001c0001t0001g0057 a0001c0001t0007g0056 a0001c0002t0001g0009 a0001c0002t0001g0020 a0001c0002t0001g0021 a0001c0002t0001g0022 a0001c0008t0001g0015 a0002c0003t0001g0041 a0003c0004t0001g0004 a0003c0004t0001g0007 a0011c0007t0001g0052 a0012c0016t0001g0038	26	HG00741.hp2 HG01070.hp2 HG01081.hp2 others(23): Show HG00741.hp2 HG01070.hp2 HG01081.hp2 HG01099.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01884.hp1 HG01891.hp1 HG02109.hp2 HG02258.hp1 HG02486.hp1 HG02622.hp2 HG02630.hp2 HG02809.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03195.hp1 HG03225.hp1 HG03654.hp1 HG03831.hp2 NA18940.hp1 NA19030.hp1 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.1484+101C>G c.1484+101C>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12		chrX	52188866
chrX:52189075	G G	T T	2	a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0006 a0001c0001t0001g0008	8	HG01070.hp1 HG01071.hp2 HG01943.hp1 others(5): Show HG01070.hp1 HG01071.hp2 HG01943.hp1 HG01978.hp2 HG01981.hp1 HG02004.hp1 HG02148.hp1 HG02273.hp1	intron_variant	MODIFIER	c.1484+310G>T c.1484+310G>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12		chrX	52189075
chrX:52189095	G G	C C	3	a0001c0001t0001g0023 a0001c0001t0001g0024 a0012c0016t0001g0038 a0001c0001t0001g0023 a0001c0001t0001g0024 a0012c0016t0001g0038	3	HG03195.hp1 NA20129.hp1 NA20129.hp2 HG03195.hp1 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.1485-292G>C c.1485-292G>C	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12		chrX	52189095
chrX:52189154	G G	A A	2	a0001c0001t0001g0030 a0001c0001t0001g0045 a0001c0001t0001g0030 a0001c0001t0001g0045	2	HG01257.hp2 HG01515.hp1 HG01257.hp2 HG01515.hp1	intron_variant	MODIFIER	c.1485-233G>A c.1485-233G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12		chrX	52189154
chrX:52189230	GGAGGTGC GGAGGTGC	G G	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1485-154_1485-148d others(9): Show c.1485-154_1485-148delGGTGCGA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12	INFO_REALIGN_3_PRIME	chrX	52189230
chrX:52189296	TG TG	T T	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1485-88delG c.1485-88delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	7/12	INFO_REALIGN_3_PRIME	chrX	52189296
chrX:52189618	T T	TC TC	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1607+28dupC c.1607+28dupC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189618
chrX:52189624	CG CG	C C	1	a0008c0013t0001g0051 a0008c0013t0001g0051	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1607+32delG c.1607+32delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189624
chrX:52189641	CA CA	C C	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	NA19082.hp1 NA19082.hp1	intron_variant	MODIFIER	c.1607+50delA c.1607+50delA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189641
chrX:52189649	TC TC	T T	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1607+57delC c.1607+57delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189649
chrX:52189689	T T	TG TG	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1607+99dupG c.1607+99dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189689
chrX:52189696	C C	T T	3	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0005g0005 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0005g0005	13	HG00408.hp1 HG00609.hp1 HG01346.hp1 others(10): Show HG00408.hp1 HG00609.hp1 HG01346.hp1 HG02523.hp2 HG02683.hp2 HG03239.hp1 HG03710.hp1 HG04115.hp1 NA18995.hp1 NA19009.hp1 NA19012.hp1 NA19066.hp1 NA19090.hp1	intron_variant	MODIFIER	c.1607+102C>T c.1607+102C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12		chrX	52189696
chrX:52189737	T T	TG TG	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.1607+147dupG c.1607+147dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189737
chrX:52189847	G G	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.1608-139G>A c.1608-139G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12		chrX	52189847
chrX:52189899	G G	A A	1	a0001c0001t0001g0047 a0001c0001t0001g0047	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1608-87G>A c.1608-87G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12		chrX	52189899
chrX:52189906	CG CG	C C	1	a0005c0006t0008g0014 a0005c0006t0008g0014	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1608-75delG c.1608-75delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189906
chrX:52189913	T T	TG TG	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	NA19082.hp1 NA19082.hp1	intron_variant	MODIFIER	c.1608-70dupG c.1608-70dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	52189913
chrX:52190130	C C	G G	4	a0001c0002t0001g0009 a0001c0002t0001g0020 a0001c0002t0001g0021 others(1): Show a0001c0002t0001g0009 a0001c0002t0001g0020 a0001c0002t0001g0021 a0001c0002t0001g0022	5	HG01884.hp1 HG02486.hp1 HG02622.hp2 others(2): Show HG01884.hp1 HG02486.hp1 HG02622.hp2 HG02809.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1670+82C>G c.1670+82C>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190130
chrX:52190139	CA CA	C C	1	a0008c0013t0001g0051 a0008c0013t0001g0051	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1670+93delA c.1670+93delA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190139
chrX:52190151	TG TG	T T	1	a0008c0013t0001g0051 a0008c0013t0001g0051	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1670+106delG c.1670+106delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190151
chrX:52190152	G G	A A	1	a0001c0008t0001g0015 a0001c0008t0001g0015	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.1670+104G>A c.1670+104G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190152
chrX:52190182	T T	TG TG	2	a0001c0001t0001g0013 a0001c0001t0001g0039 a0001c0001t0001g0013 a0001c0001t0001g0039	3	HG01255.hp1 HG02630.hp1 HG02976.hp2 HG01255.hp1 HG02630.hp1 HG02976.hp2	intron_variant	MODIFIER	c.1670+140dupG c.1670+140dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190182
chrX:52190221	C C	CG CG	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	NA19082.hp1 NA19082.hp1	intron_variant	MODIFIER	c.1670+175dupG c.1670+175dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190221
chrX:52190230	GA GA	G G	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1670+186delA c.1670+186delA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190230
chrX:52190264	T T	TG TG	1	a0010c0015t0001g0019 a0010c0015t0001g0019	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1670+220dupG c.1670+220dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190264
chrX:52190277	C C	T T	1	a0001c0012t0001g0049 a0001c0012t0001g0049	1	HG03704.hp2 HG03704.hp2	intron_variant	MODIFIER	c.1670+229C>T c.1670+229C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190277
chrX:52190278	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.1670+230G>A c.1670+230G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190278
chrX:52190350	C C	T T	1	a0001c0002t0001g0021 a0001c0002t0001g0021	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.1670+302C>T c.1670+302C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190350
chrX:52190447	C C	G G	2	a0001c0001t0001g0027 a0001c0001t0001g0037 a0001c0001t0001g0027 a0001c0001t0001g0037	2	HG01192.hp1 HG02698.hp1 HG01192.hp1 HG02698.hp1	intron_variant	MODIFIER	c.1670+399C>G c.1670+399C>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190447
chrX:52190447	C C	T T	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	HG03195.hp2 HG03195.hp2	intron_variant	MODIFIER	c.1670+399C>T c.1670+399C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190447
chrX:52190477	G G	A A	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG03239.hp2 HG03239.hp2	intron_variant	MODIFIER	c.1670+429G>A c.1670+429G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190477
chrX:52190480	C C	CA CA	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1670+433dupA c.1670+433dupA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190480
chrX:52190495	A A	AG AG	1	a0002c0010t0001g0018 a0002c0010t0001g0018	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.1670+450dupG c.1670+450dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190495
chrX:52190528	G G	A A	3	a0001c0001t0001g0032 a0001c0001t0001g0042 a0001c0001t0001g0048 a0001c0001t0001g0032 a0001c0001t0001g0042 a0001c0001t0001g0048	3	NA18974.hp1 NA19004.hp1 NA19010.hp1 NA18974.hp1 NA19004.hp1 NA19010.hp1	intron_variant	MODIFIER	c.1671-466G>A c.1671-466G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190528
chrX:52190529	C C	CT CT	1	a0002c0010t0001g0018 a0002c0010t0001g0018	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.1671-463dupT c.1671-463dupT	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190529
chrX:52190556	TC TC	T T	1	a0008c0013t0001g0051 a0008c0013t0001g0051	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1671-436delC c.1671-436delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190556
chrX:52190585	AG AG	A A	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1671-406delG c.1671-406delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190585
chrX:52190604	GC GC	G G	1	a0002c0010t0001g0018 a0002c0010t0001g0018	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.1671-388delC c.1671-388delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190604
chrX:52190680	A A	AG AG	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1671-312dupG c.1671-312dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190680
chrX:52190751	A A	C C	13	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 others(10): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0039 a0001c0001t0001g0043 a0001c0001t0001g0057 a0001c0001t0007g0056 a0001c0008t0001g0015 a0002c0003t0001g0041 a0003c0004t0001g0004 a0003c0004t0001g0007 a0012c0016t0001g0038	19	HG01070.hp2 HG01081.hp2 HG01099.hp1 others(16): Show HG01070.hp2 HG01081.hp2 HG01099.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01891.hp1 HG02109.hp2 HG02258.hp1 HG02630.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03195.hp1 HG03225.hp1 HG03831.hp2 NA18940.hp1 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.1671-243A>C c.1671-243A>C	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190751
chrX:52190774	TC TC	T T	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1671-218delC c.1671-218delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190774
chrX:52190776	CG CG	C C	1	a0011c0007t0001g0052 a0011c0007t0001g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.1671-214delG c.1671-214delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190776
chrX:52190841	G G	GT GT	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1671-150dupT c.1671-150dupT	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190841
chrX:52190848	A A	G G	1	a0011c0007t0001g0052 a0011c0007t0001g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.1671-146A>G c.1671-146A>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12		chrX	52190848
chrX:52190852	A A	AGT AGT	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1671-140_1671-139d others(4): Show c.1671-140_1671-139dupTG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190852
chrX:52190857	A A	AG AG	1	a0002c0010t0001g0018 a0002c0010t0001g0018	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.1671-134dupG c.1671-134dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190857
chrX:52190906	CG CG	C C	1	a0002c0010t0001g0018 a0002c0010t0001g0018	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.1671-85delG c.1671-85delG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190906
chrX:52190937	C C	CG CG	1	a0011c0007t0001g0052 a0011c0007t0001g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.1671-56dupG c.1671-56dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	52190937
chrX:52191118	C C	A A	12	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 others(9): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0039 a0001c0001t0001g0043 a0001c0001t0001g0057 a0001c0001t0007g0056 a0001c0008t0001g0015 a0003c0004t0001g0004 a0003c0004t0001g0007 a0012c0016t0001g0038	18	HG01070.hp2 HG01081.hp2 HG01099.hp1 others(15): Show HG01070.hp2 HG01081.hp2 HG01099.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01891.hp1 HG02109.hp2 HG02258.hp1 HG02630.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03195.hp1 HG03225.hp1 NA18940.hp1 NA20129.hp1 NA20129.hp2	intron_variant	MODIFIER	c.1785+10C>A c.1785+10C>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12		chrX	52191118
chrX:52191173	CTTGGTCG others(17): Show CTTGGTCGAGGCCTCCTTCCCATTA	C C	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	NA18980.hp1 NA18980.hp1	intron_variant	MODIFIER	c.1785+66_1785+89del others(24): Show c.1785+66_1785+89delTTGGTCGAGGCCTCCTTCCCATTA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12		chrX	52191173
chrX:52191190	TC TC	T T	1	a0006c0018t0002g0016 a0006c0018t0002g0016	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.1785+85delC c.1785+85delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	52191190
chrX:52191233	A A	AG AG	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1785+127dupG c.1785+127dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	52191233
chrX:52191340	C C	CA CA	1	a0011c0007t0001g0052 a0011c0007t0001g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.1786-90dupA c.1786-90dupA	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	52191340
chrX:52191351	C C	T T	1	a0001c0001t0001g0057 a0001c0001t0001g0057	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.1786-80C>T c.1786-80C>T	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12		chrX	52191351
chrX:52191366	C C	CG CG	1	a0011c0007t0001g0052 a0011c0007t0001g0052	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.1786-62dupG c.1786-62dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	52191366
chrX:52191390	T T	TG TG	1	a0010c0015t0001g0019 a0010c0015t0001g0019	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1786-37dupG c.1786-37dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	52191390
chrX:52191421	TC TC	T T	1	a0011c0007t0001g0052 a0011c0007t0001g0052	1	HG03654.hp1 HG03654.hp1	splice_region_variant&intron_variant	LOW	c.1786-8delC c.1786-8delC	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	52191421
chrX:52191929	A A	C C	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.2216+68A>C c.2216+68A>C	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/12		chrX	52191929
chrX:52191933	C C	A A	1	a0001c0001t0001g0057 a0001c0001t0001g0057	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.2216+72C>A c.2216+72C>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/12		chrX	52191933
chrX:52191935	A A	G G	69	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(66): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0003g0034 a0001c0001t0004g0001 a0001c0001t0005g0005 a0001c0001t0006g0001 a0001c0001t0007g0056 a0001c0002t0001g0009 a0001c0002t0001g0020 a0001c0002t0001g0021 a0001c0002t0001g0022 a0001c0008t0001g0015 a0001c0012t0001g0049 a0001c0017t0001g0001 a0002c0003t0001g0002 a0002c0003t0001g0026 a0002c0003t0001g0041 a0002c0009t0001g0001 a0002c0010t0001g0018 a0003c0004t0001g0004 a0003c0004t0001g0007 a0004c0005t0001g0001 a0004c0005t0001g0002 a0005c0006t0008g0014 a0006c0018t0002g0016 a0007c0011t0001g0002 a0008c0013t0001g0051 a0009c0014t0001g0002 a0010c0015t0001g0019 a0011c0007t0001g0052 a0012c0016t0001g0038	220	HG00140.hp1 HG00280.hp1 HG00408.hp1 others(217): Show HG00140.hp1 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.2216+74A>G c.2216+74A>G	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/12		chrX	52191935
chrX:52191939	T T	TG TG	2	a0002c0003t0001g0041 a0008c0013t0001g0051 a0002c0003t0001g0041 a0008c0013t0001g0051	2	HG03831.hp2 NA19076.hp1 HG03831.hp2 NA19076.hp1	intron_variant	MODIFIER	c.2216+83dupG c.2216+83dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	52191939
chrX:52191948	T T	TG TG	1	a0002c0010t0001g0018 a0002c0010t0001g0018	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.2216+92dupG c.2216+92dupG	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	52191948
chrX:52191957	C C	A A	1	a0001c0001t0003g0034 a0001c0001t0003g0034	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.2216+96C>A c.2216+96C>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/12		chrX	52191957
chrX:52191973	G G	A A	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.2217-84G>A c.2217-84G>A	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/12		chrX	52191973

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JoGo Online Haplotype Explorer MAGED4_chrX_52179888_52197268

JoGo Local Haplotype Explorer (on iGV) MAGED4_chrX_52179888_52197268

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 12)

CCoding Level Haplotype Info (Total: 18)

TTranscript Level Haplotype Info (Total: 8)

GGenebody Level Haplotype Info (Total: 57)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 18)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 23)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 69)

Haplotype Details by Sample (Haploid Level) (Total: 220)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 29)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 4)

TTranscript Level Haplotype Variants (Exon) (Total: 9)

GGenebody Level Haplotype Variants (Intron) (Total: 120)

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Annotation (Repeats)

Annotation (SNP Array)