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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

  Error connecting to IGV?   MAGED4_chrX_52179888_52197268  MAGED4_chrX_52179888_52197268 (clean+top1000)

Multiple Alignments (by translate haplotype frequency)Multiple Alignments (by aa haplotype frequency) Multiple Alignments (by translate haplotype similarity)Multiple Alignments (by aa haplotype similarity)

Item Value
geneid 728239
ensemblid ENSG00000154545.17
hgncid 23793
symbol MAGED4
name MAGE family member D4
refseq_nuc NM_001272063.2
refseq_prot NP_001258992.1
ensembl_nuc ENST00000471932.6
ensembl_prot ENSP00000507908.1
mane_status MANE Select
chr chrX
start 52184888
end 52192268
strand +
ver v1.2
region chrX:52184888-52192268
region5000 chrX:52179888-52197268
regionname0 MAGED4_chrX_52184888_52192268
regionname5000 MAGED4_chrX_52179888_52197268

ahapid grch38/
chm13v2 		alen total AFR AMR EAS EUR SAS JPT regionname genename aa chr start end
a0001 0/0 741 199 50 42 85 4 18 62 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0002 0/0 418 6 1 2 1 0 2 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0003 0/0 741 4 3 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0004 0/0 741 3 0 0 3 0 0 3 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0005 0/0 15 1 0 0 1 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0006 0/0 381 1 0 0 1 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0007 0/0 741 1 0 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0008 0/0 631 1 0 0 1 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0009 0/0 418 1 0 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0010 0/0 233 1 0 0 1 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0011 0/0 133 1 0 0 0 0 1 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0012 0/0 741 1 1 0 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268

chapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
c0001 0/0 2226 191 43 42 85 4 17 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0002 0/0 2226 5 5 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0003 0/0 2227 4 1 1 0 0 2 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0004 0/0 2226 4 3 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0005 0/0 2226 3 0 0 3 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0006 0/0 2231 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0007 0/0 2227 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0008 0/0 2226 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0009 0/0 2227 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0010 0/0 2226 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0011 0/0 2226 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0012 0/0 2226 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0013 0/0 2225 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0014 0/0 2227 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0015 0/0 2227 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0016 0/0 2226 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0017 0/0 2226 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
c0018 0/0 2234 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268

thapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
t0001 0/0 312 213 53 46 91 4 19 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
t0002 0/0 314 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
t0003 0/0 312 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
t0004 0/0 313 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
t0005 0/0 312 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
t0006 0/0 312 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
t0007 0/0 312 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
t0008 0/0 312 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268

ghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
g0001 0/0 78 22 9 41 2 4 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0002 0/0 57 8 16 26 1 6 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0003 0/0 8 0 1 5 0 2 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0004 0/0 6 1 4 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0005 0/0 5 0 0 3 0 2 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0006 0/0 4 0 4 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0007 0/0 4 3 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0008 0/0 4 0 4 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0009 0/0 2 2 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0010 0/0 2 2 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0011 0/0 2 0 0 2 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0012 0/0 2 0 0 2 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0013 0/0 2 2 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0014 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0015 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0016 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0017 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0018 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0019 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0020 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0021 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0022 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0023 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0024 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0025 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0026 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0027 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0028 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0029 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0030 0/0 1 0 0 0 1 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0031 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0032 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0033 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0034 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0035 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0036 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0037 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0038 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0039 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0040 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0041 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0042 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0043 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0044 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0045 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0046 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0047 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0048 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0049 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0050 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0051 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0052 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0053 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0054 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0055 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0056 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
g0057 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268

achapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
a0001c0001 0/0 2226 191 43 42 85 4 17 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0002 0/0 2226 5 5 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0008 0/0 2226 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0012 0/0 2226 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0017 0/0 2226 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0002c0003 0/0 2227 4 1 1 0 0 2 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0002c0009 0/0 2227 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0002c0010 0/0 2226 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0003c0004 0/0 2226 4 3 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0004c0005 0/0 2226 3 0 0 3 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0005c0006 0/0 2231 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0006c0018 0/0 2234 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0007c0011 0/0 2226 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0008c0013 0/0 2225 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0009c0014 0/0 2227 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0010c0015 0/0 2227 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0011c0007 0/0 2227 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0012c0016 0/0 2226 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268

acthapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
a0001c0001t0001 0/0 2537 186 41 42 84 4 15 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0001t0003 0/0 2537 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0001t0004 0/0 2538 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0001t0005 0/0 2537 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0001t0006 0/0 2537 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0001t0007 0/0 2537 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0002t0001 0/0 2537 5 5 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0008t0001 0/0 2537 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0012t0001 0/0 2537 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0001c0017t0001 0/0 2537 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0002c0003t0001 0/0 2538 4 1 1 0 0 2 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0002c0009t0001 0/0 2538 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0002c0010t0001 0/0 2537 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0003c0004t0001 0/0 2537 4 3 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0004c0005t0001 0/0 2537 3 0 0 3 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0005c0006t0008 0/0 2542 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0006c0018t0002 0/0 2547 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0007c0011t0001 0/0 2537 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0008c0013t0001 0/0 2536 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0009c0014t0001 0/0 2538 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0010c0015t0001 0/0 2538 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0011c0007t0001 0/0 2538 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268
a0012c0016t0001 0/0 2537 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 copy fasta chrX 52179888 52197268

actghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
a0001c0001t0001g0001 0/0 72 21 9 37 2 3 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0002 0/0 52 7 15 24 1 5 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0003 0/0 8 0 1 5 0 2 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0004 0/0 4 0 3 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0005 0/0 4 0 0 3 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0006 0/0 4 0 4 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0007 0/0 2 1 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0008 0/0 4 0 4 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0010 0/0 2 2 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0011 0/0 2 0 0 2 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0012 0/0 2 0 0 2 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0013 0/0 2 2 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0017 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0023 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0024 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0025 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0027 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0028 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0029 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0030 0/0 1 0 0 0 1 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0031 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0032 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0033 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0035 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0036 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0037 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0039 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0040 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0042 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0043 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0044 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0045 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0046 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0047 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0048 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0050 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0053 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0054 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0055 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0001g0057 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0003g0034 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0004g0001 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0005g0005 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0006g0001 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0001t0007g0056 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0002t0001g0009 0/0 2 2 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0002t0001g0020 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0002t0001g0021 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0002t0001g0022 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0008t0001g0015 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0012t0001g0049 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0001c0017t0001g0001 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0002c0003t0001g0002 0/0 2 1 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0002c0003t0001g0026 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0002c0003t0001g0041 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0002c0009t0001g0001 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0002c0010t0001g0018 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0003c0004t0001g0004 0/0 2 1 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0003c0004t0001g0007 0/0 2 2 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0004c0005t0001g0001 0/0 2 0 0 2 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0004c0005t0001g0002 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0005c0006t0008g0014 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0006c0018t0002g0016 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0007c0011t0001g0002 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0008c0013t0001g0051 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0009c0014t0001g0002 0/0 1 0 1 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0010c0015t0001g0019 0/0 1 0 0 1 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0011c0007t0001g0052 0/0 1 0 0 0 0 1 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
a0012c0016t0001g0038 0/0 1 1 0 0 0 0 MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268

sampleid ID
haplotypeid
 ahapid chapid thapid ghapid gpopname popname regionname genename chr start end
HG00140 hp1 a0001 c0001 t0001 g0001 EUR GBR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00280 hp1 a0001 c0001 t0001 g0001 EUR FIN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00408 hp1 a0001 c0001 t0001 g0005 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00408 hp2 a0001 c0001 t0001 g0001 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00438 hp1 a0001 c0001 t0001 g0002 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00438 hp2 a0001 c0001 t0001 g0002 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00558 hp1 a0001 c0001 t0001 g0001 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00558 hp2 a0001 c0001 t0001 g0002 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00597 hp1 a0001 c0001 t0001 g0002 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00597 hp2 a0001 c0001 t0001 g0002 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00609 hp1 a0001 c0001 t0001 g0005 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00621 hp1 a0001 c0001 t0001 g0025 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00639 hp1 a0001 c0001 t0001 g0002 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00639 hp2 a0001 c0001 t0001 g0002 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00673 hp1 a0001 c0001 t0001 g0001 EAS CHS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00735 hp1 a0009 c0014 t0001 g0002 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00735 hp2 a0001 c0001 t0001 g0002 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00738 hp1 a0002 c0010 t0001 g0018 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00741 hp1 a0001 c0001 t0001 g0001 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG00741 hp2 a0001 c0001 t0001 g0040 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01069 hp1 a0001 c0001 t0001 g0001 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01070 hp1 a0001 c0001 t0001 g0008 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01070 hp2 a0001 c0001 t0001 g0004 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01071 hp1 a0001 c0001 t0001 g0002 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01071 hp2 a0001 c0001 t0001 g0006 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01081 hp1 a0001 c0001 t0001 g0002 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01081 hp2 a0001 c0001 t0001 g0007 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01099 hp1 a0001 c0001 t0001 g0004 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01106 hp1 a0001 c0001 t0001 g0002 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01167 hp1 a0001 c0001 t0001 g0001 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01175 hp1 a0001 c0001 t0001 g0001 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01175 hp2 a0001 c0001 t0001 g0004 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01192 hp1 a0001 c0001 t0001 g0027 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01243 hp1 a0003 c0004 t0001 g0004 AMR PUR MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01255 hp1 a0001 c0001 t0001 g0039 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01257 hp1 a0001 c0001 t0001 g0001 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01257 hp2 a0001 c0001 t0001 g0045 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01261 hp1 a0002 c0003 t0001 g0026 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01346 hp1 a0001 c0001 t0001 g0003 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01346 hp2 a0001 c0001 t0001 g0001 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01361 hp1 a0001 c0001 t0001 g0001 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01361 hp2 a0001 c0001 t0001 g0001 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01433 hp1 a0001 c0001 t0001 g0036 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01496 hp1 a0001 c0001 t0001 g0002 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01496 hp2 a0001 c0001 t0001 g0002 AMR CLM MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01515 hp1 a0001 c0001 t0001 g0030 EUR IBS MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01884 hp1 a0001 c0002 t0001 g0009 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01884 hp2 a0001 c0001 t0003 g0034 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01891 hp1 a0003 c0004 t0001 g0007 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01891 hp2 a0001 c0001 t0001 g0035 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01928 hp1 a0001 c0001 t0001 g0002 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01934 hp1 a0001 c0001 t0001 g0002 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01943 hp1 a0001 c0001 t0001 g0008 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01952 hp1 a0001 c0001 t0001 g0001 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01978 hp1 a0001 c0001 t0001 g0002 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01978 hp2 a0001 c0001 t0001 g0006 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01981 hp1 a0001 c0001 t0001 g0008 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG01981 hp2 a0001 c0001 t0001 g0002 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02004 hp1 a0001 c0001 t0001 g0008 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02004 hp2 a0001 c0001 t0001 g0002 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02027 hp1 a0001 c0001 t0001 g0001 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02040 hp1 a0001 c0001 t0001 g0001 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02055 hp1 a0001 c0001 t0001 g0002 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02071 hp1 a0001 c0001 t0001 g0055 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02074 hp1 a0001 c0001 t0001 g0002 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02080 hp1 a0001 c0001 t0001 g0002 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02080 hp2 a0001 c0001 t0001 g0002 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02083 hp1 a0001 c0001 t0001 g0002 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02129 hp1 a0001 c0001 t0001 g0001 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02135 hp1 a0007 c0011 t0001 g0002 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02145 hp1 a0002 c0003 t0001 g0002 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02148 hp1 a0001 c0001 t0001 g0006 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02148 hp2 a0001 c0001 t0001 g0002 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02258 hp1 a0001 c0008 t0001 g0015 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02273 hp1 a0001 c0001 t0001 g0006 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02273 hp2 a0001 c0001 t0001 g0002 AMR PEL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02451 hp1 a0001 c0001 t0001 g0001 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02451 hp2 a0001 c0001 t0001 g0001 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02523 hp1 a0001 c0001 t0001 g0001 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02523 hp2 a0001 c0001 t0001 g0003 EAS KHV MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02572 hp1 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02602 hp1 a0001 c0001 t0001 g0002 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02615 hp1 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02615 hp2 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02622 hp1 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02622 hp2 a0001 c0002 t0001 g0021 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02630 hp1 a0001 c0001 t0001 g0013 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02630 hp2 a0001 c0001 t0007 g0056 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02647 hp1 a0001 c0001 t0001 g0029 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02683 hp1 a0001 c0001 t0001 g0002 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02683 hp2 a0001 c0001 t0001 g0003 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02698 hp1 a0001 c0001 t0001 g0037 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02717 hp1 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02735 hp1 a0001 c0001 t0001 g0044 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02738 hp1 a0002 c0003 t0001 g0002 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02809 hp1 a0001 c0002 t0001 g0020 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02809 hp2 a0001 c0001 t0001 g0010 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02886 hp1 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02886 hp2 a0001 c0001 t0001 g0057 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02895 hp1 a0003 c0004 t0001 g0004 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02896 hp1 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02896 hp2 a0001 c0001 t0001 g0001 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02897 hp1 a0001 c0001 t0001 g0043 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02897 hp2 a0001 c0001 t0001 g0002 AFR GWD MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02922 hp1 a0001 c0017 t0001 g0001 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02922 hp2 a0001 c0001 t0001 g0001 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02965 hp1 a0001 c0001 t0001 g0001 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02976 hp1 a0001 c0001 t0001 g0001 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02976 hp2 a0001 c0001 t0001 g0013 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03130 hp1 a0001 c0001 t0001 g0001 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03139 hp1 a0001 c0001 t0001 g0002 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03195 hp1 a0001 c0001 t0001 g0023 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03195 hp2 a0001 c0001 t0001 g0054 AFR ESN MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03209 hp1 a0001 c0001 t0001 g0002 AFR MSL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03225 hp1 a0001 c0001 t0001 g0007 AFR MSL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03239 hp1 a0001 c0001 t0001 g0005 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03239 hp2 a0001 c0001 t0001 g0031 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03486 hp1 a0001 c0001 t0001 g0002 AFR MSL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03486 hp2 a0001 c0001 t0001 g0002 AFR MSL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03490 hp1 a0001 c0001 t0001 g0001 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03654 hp1 a0011 c0007 t0001 g0052 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03704 hp1 a0001 c0001 t0001 g0001 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03704 hp2 a0001 c0012 t0001 g0049 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03710 hp1 a0001 c0001 t0001 g0003 SAS PJL MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03831 hp1 a0001 c0001 t0001 g0002 SAS BEB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03831 hp2 a0002 c0003 t0001 g0041 SAS BEB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG03942 hp1 a0001 c0001 t0006 g0001 SAS BEB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG04115 hp1 a0001 c0001 t0005 g0005 SAS STU MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG04184 hp1 a0001 c0001 t0001 g0002 SAS BEB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG04184 hp2 a0001 c0001 t0001 g0028 SAS BEB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG04204 hp1 a0001 c0001 t0001 g0002 SAS STU MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18522 hp1 a0001 c0001 t0001 g0001 AFR YRI MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18612 hp1 a0001 c0001 t0001 g0002 EAS CHB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18747 hp1 a0001 c0001 t0001 g0001 EAS CHB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18940 hp1 a0001 c0001 t0001 g0004 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18944 hp1 a0001 c0001 t0001 g0046 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18945 hp1 a0004 c0005 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18946 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18946 hp2 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18948 hp1 a0001 c0001 t0001 g0053 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18952 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18954 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18954 hp2 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18959 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18960 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18961 hp1 a0002 c0009 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18962 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18965 hp1 a0005 c0006 t0008 g0014 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18966 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18967 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18970 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18971 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18974 hp1 a0001 c0001 t0001 g0042 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18977 hp1 a0001 c0001 t0004 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18980 hp1 a0001 c0001 t0001 g0033 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18980 hp2 a0004 c0005 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18982 hp1 a0006 c0018 t0002 g0016 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18983 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18984 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18986 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18988 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18990 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18994 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18995 hp1 a0001 c0001 t0001 g0003 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18999 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18999 hp2 a0001 c0001 t0001 g0012 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19000 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19004 hp1 a0001 c0001 t0001 g0048 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19005 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19006 hp1 a0010 c0015 t0001 g0019 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19007 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19009 hp1 a0001 c0001 t0001 g0003 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19010 hp1 a0001 c0001 t0001 g0032 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19010 hp2 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19011 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19011 hp2 a0004 c0005 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19012 hp1 a0001 c0001 t0001 g0003 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19030 hp1 a0001 c0002 t0001 g0022 AFR LWK MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19030 hp2 a0001 c0001 t0001 g0002 AFR LWK MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19043 hp1 a0001 c0001 t0001 g0001 AFR LWK MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19055 hp1 a0001 c0001 t0001 g0017 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19056 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19058 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19060 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19062 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19063 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19065 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19065 hp2 a0001 c0001 t0001 g0011 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19066 hp1 a0001 c0001 t0001 g0003 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19067 hp1 a0001 c0001 t0001 g0012 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19068 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19070 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19075 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19076 hp1 a0008 c0013 t0001 g0051 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19079 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19081 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19081 hp2 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19082 hp1 a0001 c0001 t0001 g0050 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19083 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19085 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19086 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19088 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19089 hp1 a0001 c0001 t0001 g0002 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19090 hp1 a0001 c0001 t0001 g0005 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19090 hp2 a0001 c0001 t0001 g0011 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA19091 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA20129 hp1 a0001 c0001 t0001 g0024 AFR ASW MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA20129 hp2 a0012 c0016 t0001 g0038 AFR ASW MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA20752 hp1 a0001 c0001 t0001 g0002 EUR TSI MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA20905 hp1 a0001 c0001 t0001 g0001 SAS GIH MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02109 hp1 a0001 c0001 t0001 g0001 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02109 hp2 a0003 c0004 t0001 g0007 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG02486 hp1 a0001 c0002 t0001 g0009 AFR ACB MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG06807 hp1 a0001 c0001 t0001 g0010 AFR USA MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
HG06807 hp2 a0001 c0001 t0001 g0001 AFR USA MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA18955 hp1 a0001 c0001 t0001 g0001 EAS JPT MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA20300 hp1 a0001 c0001 t0001 g0001 AFR USA MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA20300 hp2 a0001 c0001 t0001 g0001 AFR USA MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA21309 hp1 a0001 c0001 t0001 g0001 AFR LWK MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268
NA21309 hp2 a0001 c0001 t0001 g0047 AFR LWK MAGED4_chrX_52179888_52197268 MAGED4 chrX 52179888 52197268

chr:pos ref alt #
# of ahapid:amino-acid(protein) level
 ahapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:52185947 C
C
 CA
CA
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.27dupA
c.27dupA
 p.Ser10fs
p.Ser10fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/13 137/2537 28/2226 10/741 INFO_REALIGN_3_PRIME chrX 52185947
chrX:52185953 GA
GA
 G
G
 1 a0006
a0006
 1 NA18982.hp1
NA18982.hp1
 frameshift_variant HIGH c.34delA
c.34delA
 p.Ser12fs
p.Ser12fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/13 143/2537 34/2226 12/741 INFO_REALIGN_3_PRIME chrX 52185953
chrX:52185997 C
C
 CG
CG
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.79dupG
c.79dupG
 p.Glu27fs
p.Glu27fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/13 189/2537 80/2226 27/741 INFO_REALIGN_3_PRIME chrX 52185997
chrX:52185997 C
C
 CT
CT
 1 a0006
a0006
 1 NA18982.hp1
NA18982.hp1
 frameshift_variant HIGH c.75_76insT
c.75_76insT
 p.Gly26fs
p.Gly26fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/13 185/2537 76/2226 26/741 chrX 52185997
chrX:52186449 C
C
 T
T
 1 a0012
a0012
 1 NA20129.hp2
NA20129.hp2
 missense_variant MODERATE c.263C>T
c.263C>T
 p.Ala88Val
p.Ala88Val
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 372/2537 263/2226 88/741 chrX 52186449
chrX:52186525 CA
CA
 C
C
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.341delA
c.341delA
 p.Asn114fs
p.Asn114fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 450/2537 341/2226 114/741 INFO_REALIGN_3_PRIME chrX 52186525
chrX:52186547 G
G
 GC
GC
 1 a0011
a0011
 1 HG03654.hp1
HG03654.hp1
 frameshift_variant HIGH c.363dupC
c.363dupC
 p.Ala122fs
p.Ala122fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 473/2537 364/2226 122/741 INFO_REALIGN_3_PRIME chrX 52186547
chrX:52186656 A
A
 AG
AG
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.474dupG
c.474dupG
 p.Pro159fs
p.Pro159fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 584/2537 475/2226 159/741 INFO_REALIGN_3_PRIME chrX 52186656
chrX:52186745 AC
AC
 A
A
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.561delC
c.561delC
 p.Ser188fs
p.Ser188fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 670/2537 561/2226 187/741 INFO_REALIGN_3_PRIME chrX 52186745
chrX:52186775 G
G
 GC
GC
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.592dupC
c.592dupC
 p.Gln198fs
p.Gln198fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 702/2537 593/2226 198/741 INFO_REALIGN_3_PRIME chrX 52186775
chrX:52186798 C
C
 CCCTAGTA
others(1): Show 
CCCTAGTAG
 1 a0006
a0006
 1 NA18982.hp1
NA18982.hp1
 frameshift_variant HIGH c.614_621dupCTAGTAGC
c.614_621dupCTAGTAGC
 p.Ala208fs
p.Ala208fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 731/2537 622/2226 208/741 INFO_REALIGN_3_PRIME chrX 52186798
chrX:52186838 A
A
 AG
AG
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.655dupG
c.655dupG
 p.Glu219fs
p.Glu219fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 765/2537 656/2226 219/741 INFO_REALIGN_3_PRIME chrX 52186838
chrX:52186845 T
T
 TG
TG
 1 a0010
a0010
 1 NA19006.hp1
NA19006.hp1
 frameshift_variant HIGH c.661dupG
c.661dupG
 p.Asp221fs
p.Asp221fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 771/2537 662/2226 221/741 INFO_REALIGN_3_PRIME chrX 52186845
chrX:52186938 G
G
 GC
GC
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.756dupC
c.756dupC
 p.Lys253fs
p.Lys253fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 866/2537 757/2226 253/741 INFO_REALIGN_3_PRIME chrX 52186938
chrX:52186970 G
G
 GC
GC
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.786dupC
c.786dupC
 p.Thr263fs
p.Thr263fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 896/2537 787/2226 263/741 INFO_REALIGN_3_PRIME chrX 52186970
chrX:52187041 GC
GC
 G
G
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.858delC
c.858delC
 p.Lys287fs
p.Lys287fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 967/2537 858/2226 286/741 INFO_REALIGN_3_PRIME chrX 52187041
chrX:52187081 C
C
 CG
CG
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.897dupG
c.897dupG
 p.Trp300fs
p.Trp300fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 1007/2537 898/2226 300/741 INFO_REALIGN_3_PRIME chrX 52187081
chrX:52187227 GA
GA
 G
G
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant&splice_region_variant HIGH c.1043delA
c.1043delA
 p.Lys348fs
p.Lys348fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/13 1152/2537 1043/2226 348/741 INFO_REALIGN_3_PRIME chrX 52187227
chrX:52187700 T
T
 TC
TC
 1 a0009
a0009
 1 HG00735.hp1
HG00735.hp1
 frameshift_variant HIGH c.1106dupC
c.1106dupC
 p.Pro370fs
p.Pro370fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 4/13 1216/2537 1107/2226 369/741 INFO_REALIGN_3_PRIME chrX 52187700
chrX:52187757 C
C
 CA
CA
 1 a0005
a0005
 1 NA18965.hp1
NA18965.hp1
 frameshift_variant HIGH c.1160_1161insA
c.1160_1161insA
 p.Arg388fs
p.Arg388fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 4/13 1270/2537 1161/2226 387/741 chrX 52187757
chrX:52187812 G
G
 GC
GC
 1 a0002
a0002
 6 HG00738.hp1
HG01261.hp1
HG02145.hp1
others(3): Show 
HG00738.hp1
HG01261.hp1
HG02145.hp1
HG02738.hp1
HG03831.hp2
NA18961.hp1
 frameshift_variant HIGH c.1222dupC
c.1222dupC
 p.Arg408fs
p.Arg408fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 4/13 1332/2537 1223/2226 408/741 INFO_REALIGN_3_PRIME chrX 52187812
chrX:52188217 G
G
 A
A
 2 a0002
a0004
a0002
a0004
 4 NA18945.hp1
NA18961.hp1
NA18980.hp2
others(1): Show 
NA18945.hp1
NA18961.hp1
NA18980.hp2
NA19011.hp2
 missense_variant MODERATE c.1324G>A
c.1324G>A
 p.Asp442Asn
p.Asp442Asn
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 6/13 1433/2537 1324/2226 442/741 chrX 52188217
chrX:52189588 G
G
 A
A
 1 a0007
a0007
 1 HG02135.hp1
HG02135.hp1
 missense_variant MODERATE c.1601G>A
c.1601G>A
 p.Arg534His
p.Arg534His
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/13 1710/2537 1601/2226 534/741 chrX 52189588
chrX:52191444 A
A
 AC
AC
 1 a0002
a0002
 1 HG00738.hp1
HG00738.hp1
 frameshift_variant HIGH c.1804dupC
c.1804dupC
 p.Arg602fs
p.Arg602fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/13 1914/2537 1805/2226 602/741 INFO_REALIGN_3_PRIME chrX 52191444
chrX:52191444 AC
AC
 A
A
 2 a0006
a0008
a0006
a0008
 2 NA18982.hp1
NA19076.hp1
NA18982.hp1
NA19076.hp1
 frameshift_variant HIGH c.1804delC
c.1804delC
 p.Arg602fs
p.Arg602fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/13 1913/2537 1804/2226 602/741 INFO_REALIGN_3_PRIME chrX 52191444
chrX:52191559 CG
CG
 C
C
 1 a0002
a0002
 1 HG00738.hp1
HG00738.hp1
 frameshift_variant HIGH c.1918delG
c.1918delG
 p.Asp640fs
p.Asp640fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/13 2027/2537 1918/2226 640/741 INFO_REALIGN_3_PRIME chrX 52191559
chrX:52191669 CT
CT
 C
C
 1 a0002
a0002
 1 HG00738.hp1
HG00738.hp1
 frameshift_variant HIGH c.2027delT
c.2027delT
 p.Phe676fs
p.Phe676fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/13 2136/2537 2027/2226 676/741 INFO_REALIGN_3_PRIME chrX 52191669
chrX:52191742 C
C
 CG
CG
 1 a0006
a0006
 1 NA18982.hp1
NA18982.hp1
 frameshift_variant HIGH c.2098dupG
c.2098dupG
 p.Val700fs
p.Val700fs
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/13 2208/2537 2099/2226 700/741 INFO_REALIGN_3_PRIME chrX 52191742
chrX:52191828 C
C
 G
G
 1 a0003
a0003
 4 HG01243.hp1
HG01891.hp1
HG02109.hp2
others(1): Show 
HG01243.hp1
HG01891.hp1
HG02109.hp2
HG02895.hp1
 missense_variant MODERATE c.2183C>G
c.2183C>G
 p.Ala728Gly
p.Ala728Gly
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/13 2292/2537 2183/2226 728/741 chrX 52191828

chr:pos ref alt #
# of chapid
 chapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:52186090 C
C
 G
G
 1 a0001c0017
a0001c0017
 1 HG02922.hp1
HG02922.hp1
 synonymous_variant LOW c.168C>G
c.168C>G
 p.Leu56Leu
p.Leu56Leu
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/13 277/2537 168/2226 56/741 chrX 52186090
chrX:52187737 G
G
 A
A
 1 a0001c0008
a0001c0008
 1 HG02258.hp1
HG02258.hp1
 synonymous_variant LOW c.1140G>A
c.1140G>A
 p.Thr380Thr
p.Thr380Thr
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 4/13 1249/2537 1140/2226 380/741 chrX 52187737
chrX:52187815 C
C
 A
A
 1 a0001c0002
a0001c0002
 5 HG01884.hp1
HG02486.hp1
HG02622.hp2
others(2): Show 
HG01884.hp1
HG02486.hp1
HG02622.hp2
HG02809.hp1
NA19030.hp1
 synonymous_variant LOW c.1218C>A
c.1218C>A
 p.Pro406Pro
p.Pro406Pro
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 4/13 1327/2537 1218/2226 406/741 chrX 52187815
chrX:52191646 T
T
 C
C
 1 a0001c0012
a0001c0012
 1 HG03704.hp2
HG03704.hp2
 synonymous_variant LOW c.2001T>C
c.2001T>C
 p.Asp667Asp
p.Asp667Asp
 MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/13 2110/2537 2001/2226 667/741 chrX 52191646

chr:pos ref alt #
# of thapid:transcript level
 thapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:52184919 CG
CG
 C
C
 1 a0005c0006t0008
a0005c0006t0008
 1 NA18965.hp1
NA18965.hp1
 5_prime_UTR_variant MODIFIER c.-74delG
c.-74delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/13 1000 INFO_REALIGN_3_PRIME chrX 52184919
chrX:52184931 T
T
 TG
TG
 1 a0005c0006t0008
a0005c0006t0008
 1 NA18965.hp1
NA18965.hp1
 5_prime_UTR_variant MODIFIER c.-65dupG
c.-65dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/13 990 INFO_REALIGN_3_PRIME chrX 52184931
chrX:52185914 A
A
 AC
AC
 1 a0006c0018t0002
a0006c0018t0002
 1 NA18982.hp1
NA18982.hp1
 5_prime_UTR_variant MODIFIER c.-6dupC
c.-6dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/13 5 INFO_REALIGN_3_PRIME chrX 52185914
chrX:52192077 C
C
 T
T
 1 a0001c0001t0007
a0001c0001t0007
 1 HG02630.hp2
HG02630.hp2
 3_prime_UTR_variant MODIFIER c.*11C>T
c.*11C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 13/13 11 chrX 52192077
chrX:52192078 G
G
 A
A
 1 a0001c0001t0003
a0001c0001t0003
 1 HG01884.hp2
HG01884.hp2
 3_prime_UTR_variant MODIFIER c.*12G>A
c.*12G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 13/13 12 chrX 52192078
chrX:52192131 A
A
 AC
AC
 1 a0001c0001t0004
a0001c0001t0004
 1 NA18977.hp1
NA18977.hp1
 3_prime_UTR_variant MODIFIER c.*68dupC
c.*68dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 13/13 69 INFO_REALIGN_3_PRIME chrX 52192131
chrX:52192158 G
G
 A
A
 1 a0001c0001t0005
a0001c0001t0005
 1 HG04115.hp1
HG04115.hp1
 3_prime_UTR_variant MODIFIER c.*92G>A
c.*92G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 13/13 92 chrX 52192158
chrX:52192159 G
G
 GA
GA
 1 a0006c0018t0002
a0006c0018t0002
 1 NA18982.hp1
NA18982.hp1
 3_prime_UTR_variant MODIFIER c.*94dupA
c.*94dupA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 13/13 95 INFO_REALIGN_3_PRIME chrX 52192159
chrX:52192226 T
T
 C
C
 1 a0001c0001t0006
a0001c0001t0006
 1 HG03942.hp1
HG03942.hp1
 3_prime_UTR_variant MODIFIER c.*160T>C
c.*160T>C
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 13/13 160 chrX 52192226

chr:pos ref alt #
# of ghapid:genebody level
 ghapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid genebody_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:52184977 GC
GC
 G
G
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+16delC
c.-32+16delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52184977
chrX:52185017 C
C
 G
G
 2 a0001c0001t0001g0057
a0001c0001t0007g0056
a0001c0001t0001g0057
a0001c0001t0007g0056
 2 HG02630.hp2
HG02886.hp2
HG02630.hp2
HG02886.hp2
 intron_variant MODIFIER c.-32+52C>G
c.-32+52C>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185017
chrX:52185026 C
C
 T
T
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+61C>T
c.-32+61C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185026
chrX:52185027 T
T
 C
C
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+62T>C
c.-32+62T>C
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185027
chrX:52185120 AC
AC
 A
A
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+158delC
c.-32+158delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185120
chrX:52185157 GC
GC
 G
G
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+195delC
c.-32+195delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185157
chrX:52185220 G
G
 A
A
 1 a0001c0008t0001g0015
a0001c0008t0001g0015
 1 HG02258.hp1
HG02258.hp1
 intron_variant MODIFIER c.-32+255G>A
c.-32+255G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185220
chrX:52185232 C
C
 CA
CA
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.-32+267_-32+268ins
others(1): Show 
c.-32+267_-32+268insA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185232
chrX:52185255 G
G
 GC
GC
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+290_-32+291ins
others(1): Show 
c.-32+290_-32+291insC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185255
chrX:52185346 A
A
 AG
AG
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+383dupG
c.-32+383dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185346
chrX:52185384 G
G
 GC
GC
 1 a0001c0001t0001g0055
a0001c0001t0001g0055
 1 HG02071.hp1
HG02071.hp1
 intron_variant MODIFIER c.-32+423dupC
c.-32+423dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185384
chrX:52185384 GC
GC
 G
G
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-32+423delC
c.-32+423delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185384
chrX:52185385 C
C
 A
A
 1 a0001c0001t0007g0056
a0001c0001t0007g0056
 1 HG02630.hp2
HG02630.hp2
 intron_variant MODIFIER c.-32+420C>A
c.-32+420C>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185385
chrX:52185408 A
A
 AC
AC
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.-32+445dupC
c.-32+445dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185408
chrX:52185413 GC
GC
 G
G
 2 a0001c0001t0001g0017
a0005c0006t0008g0014
a0001c0001t0001g0017
a0005c0006t0008g0014
 2 NA18965.hp1
NA19055.hp1
NA18965.hp1
NA19055.hp1
 intron_variant MODIFIER c.-32+450delC
c.-32+450delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185413
chrX:52185546 T
T
 C
C
 1 a0002c0010t0001g0018
a0002c0010t0001g0018
 1 HG00738.hp1
HG00738.hp1
 intron_variant MODIFIER c.-31-346T>C
c.-31-346T>C
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185546
chrX:52185632 GC
GC
 G
G
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-31-258delC
c.-31-258delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185632
chrX:52185696 TG
TG
 T
T
 1 a0001c0001t0001g0017
a0001c0001t0001g0017
 1 NA19055.hp1
NA19055.hp1
 intron_variant MODIFIER c.-31-193delG
c.-31-193delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185696
chrX:52185711 AC
AC
 A
A
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-31-179delC
c.-31-179delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185711
chrX:52185744 T
T
 TC
TC
 1 a0010c0015t0001g0019
a0010c0015t0001g0019
 1 NA19006.hp1
NA19006.hp1
 intron_variant MODIFIER c.-31-141dupC
c.-31-141dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185744
chrX:52185744 T
T
 TCC
TCC
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.-31-142_-31-141dup
others(2): Show 
c.-31-142_-31-141dupCC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185744
chrX:52185757 T
T
 TC
TC
 1 a0001c0002t0001g0022
a0001c0002t0001g0022
 1 NA19030.hp1
NA19030.hp1
 intron_variant MODIFIER c.-31-133dupC
c.-31-133dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185757
chrX:52185757 T
T
 TCC
TCC
 2 a0001c0002t0001g0009
a0001c0002t0001g0021
a0001c0002t0001g0009
a0001c0002t0001g0021
 3 HG01884.hp1
HG02486.hp1
HG02622.hp2
HG01884.hp1
HG02486.hp1
HG02622.hp2
 intron_variant MODIFIER c.-31-134_-31-133dup
others(2): Show 
c.-31-134_-31-133dupCC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185757
chrX:52185757 T
T
 TCCC
TCCC
 1 a0001c0002t0001g0020
a0001c0002t0001g0020
 1 HG02809.hp1
HG02809.hp1
 intron_variant MODIFIER c.-31-133_-31-132ins
others(3): Show 
c.-31-133_-31-132insCCC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185757
chrX:52185759 CT
CT
 C
C
 1 a0001c0008t0001g0015
a0001c0008t0001g0015
 1 HG02258.hp1
HG02258.hp1
 intron_variant MODIFIER c.-31-132delT
c.-31-132delT
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185759
chrX:52185760 T
T
 C
C
 4 a0001c0002t0001g0009
a0001c0002t0001g0020
a0001c0002t0001g0021
others(1): Show 
a0001c0002t0001g0009
a0001c0002t0001g0020
a0001c0002t0001g0021
a0001c0002t0001g0022
 5 HG01884.hp1
HG02486.hp1
HG02622.hp2
others(2): Show 
HG01884.hp1
HG02486.hp1
HG02622.hp2
HG02809.hp1
NA19030.hp1
 intron_variant MODIFIER c.-31-132T>C
c.-31-132T>C
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185760
chrX:52185760 T
T
 TC
TC
 30 a0001c0001t0001g0002
a0001c0001t0001g0005
a0001c0001t0001g0006
others(27): Show 
a0001c0001t0001g0002
a0001c0001t0001g0005
a0001c0001t0001g0006
a0001c0001t0001g0007
a0001c0001t0001g0010
a0001c0001t0001g0027
a0001c0001t0001g0028
a0001c0001t0001g0029
a0001c0001t0001g0030
a0001c0001t0001g0031
a0001c0001t0001g0032
a0001c0001t0001g0033
a0001c0001t0001g0035
a0001c0001t0001g0036
a0001c0001t0001g0037
a0001c0001t0001g0039
a0001c0001t0001g0040
a0001c0001t0001g0042
a0001c0001t0001g0043
a0001c0001t0003g0034
a0001c0001t0005g0005
a0002c0003t0001g0002
a0002c0003t0001g0041
a0002c0010t0001g0018
a0003c0004t0001g0007
a0004c0005t0001g0002
a0006c0018t0002g0016
a0007c0011t0001g0002
a0009c0014t0001g0002
a0012c0016t0001g0038
 91 HG00408.hp1
HG00438.hp1
HG00438.hp2
others(88): Show 
HG00408.hp1
HG00438.hp1
HG00438.hp2
HG00558.hp2
HG00597.hp1
HG00597.hp2
HG00609.hp1
HG00639.hp1
HG00639.hp2
HG00735.hp1
HG00735.hp2
HG00738.hp1
HG00741.hp2
HG01071.hp1
HG01071.hp2
HG01081.hp1
HG01081.hp2
HG01106.hp1
HG01192.hp1
HG01255.hp1
HG01433.hp1
HG01496.hp1
HG01496.hp2
HG01515.hp1
HG01884.hp2
HG01891.hp1
HG01891.hp2
HG01928.hp1
HG01934.hp1
HG01978.hp1
HG01978.hp2
HG01981.hp2
HG02004.hp2
HG02055.hp1
HG02074.hp1
HG02080.hp1
HG02080.hp2
HG02083.hp1
HG02109.hp2
HG02135.hp1
HG02145.hp1
HG02148.hp1
HG02148.hp2
HG02273.hp1
HG02273.hp2
HG02602.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG02738.hp1
HG02809.hp2
HG02897.hp1
HG02897.hp2
HG03139.hp1
HG03209.hp1
HG03225.hp1
HG03239.hp1
HG03239.hp2
HG03486.hp1
HG03486.hp2
HG03831.hp1
HG03831.hp2
HG04115.hp1
HG04184.hp1
HG04184.hp2
HG04204.hp1
HG06807.hp1
NA18612.hp1
NA18946.hp1
NA18946.hp2
NA18960.hp1
NA18966.hp1
NA18967.hp1
NA18971.hp1
NA18974.hp1
NA18980.hp1
NA18980.hp2
NA18982.hp1
NA18988.hp1
NA18990.hp1
NA18994.hp1
NA19000.hp1
NA19005.hp1
NA19010.hp1
NA19030.hp2
NA19062.hp1
NA19079.hp1
NA19089.hp1
NA19090.hp1
NA20129.hp2
NA20752.hp1
 intron_variant MODIFIER c.-31-122dupC
c.-31-122dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185760
chrX:52185760 T
T
 TCC
TCC
 2 a0001c0001t0001g0025
a0002c0003t0001g0026
a0001c0001t0001g0025
a0002c0003t0001g0026
 2 HG00621.hp1
HG01261.hp1
HG00621.hp1
HG01261.hp1
 intron_variant MODIFIER c.-31-123_-31-122dup
others(2): Show 
c.-31-123_-31-122dupCC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185760
chrX:52185760 T
T
 TCCC
TCCC
 1 a0001c0001t0001g0024
a0001c0001t0001g0024
 1 NA20129.hp1
NA20129.hp1
 intron_variant MODIFIER c.-31-124_-31-122dup
others(3): Show 
c.-31-124_-31-122dupCCC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185760
chrX:52185760 T
T
 TCCCC
TCCCC
 1 a0001c0001t0001g0023
a0001c0001t0001g0023
 1 HG03195.hp1
HG03195.hp1
 intron_variant MODIFIER c.-31-125_-31-122dup
others(4): Show 
c.-31-125_-31-122dupCCCC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185760
chrX:52185760 TC
TC
 T
T
 2 a0001c0001t0001g0053
a0001c0001t0001g0054
a0001c0001t0001g0053
a0001c0001t0001g0054
 2 HG03195.hp2
NA18948.hp1
HG03195.hp2
NA18948.hp1
 intron_variant MODIFIER c.-31-122delC
c.-31-122delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185760
chrX:52185768 C
C
 G
G
 1 a0001c0001t0001g0017
a0001c0001t0001g0017
 1 NA19055.hp1
NA19055.hp1
 intron_variant MODIFIER c.-31-124C>G
c.-31-124C>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 chrX 52185768
chrX:52185813 G
G
 GC
GC
 1 a0001c0001t0001g0027
a0001c0001t0001g0027
 1 HG01192.hp1
HG01192.hp1
 intron_variant MODIFIER c.-31-75dupC
c.-31-75dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185813
chrX:52185840 T
T
 TC
TC
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.-31-49dupC
c.-31-49dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185840
chrX:52185854 G
G
 GC
GC
 1 a0001c0001t0001g0027
a0001c0001t0001g0027
 1 HG01192.hp1
HG01192.hp1
 intron_variant MODIFIER c.-31-33dupC
c.-31-33dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185854
chrX:52185860 T
T
 TCC
TCC
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.-31-28_-31-27dupCC
c.-31-28_-31-27dupCC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 1/12 INFO_REALIGN_3_PRIME chrX 52185860
chrX:52186181 A
A
 G
G
 2 a0001c0001t0001g0013
a0002c0010t0001g0018
a0001c0001t0001g0013
a0002c0010t0001g0018
 3 HG00738.hp1
HG02630.hp1
HG02976.hp2
HG00738.hp1
HG02630.hp1
HG02976.hp2
 intron_variant MODIFIER c.210+49A>G
c.210+49A>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/12 chrX 52186181
chrX:52186182 T
T
 TG
TG
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.210+55dupG
c.210+55dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/12 INFO_REALIGN_3_PRIME chrX 52186182
chrX:52186195 A
A
 AG
AG
 5 a0001c0001t0001g0027
a0001c0001t0001g0042
a0001c0001t0001g0043
others(2): Show 
a0001c0001t0001g0027
a0001c0001t0001g0042
a0001c0001t0001g0043
a0002c0003t0001g0026
a0006c0018t0002g0016
 5 HG01192.hp1
HG01261.hp1
HG02897.hp1
others(2): Show 
HG01192.hp1
HG01261.hp1
HG02897.hp1
NA18974.hp1
NA18982.hp1
 intron_variant MODIFIER c.210+69dupG
c.210+69dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/12 INFO_REALIGN_3_PRIME chrX 52186195
chrX:52186276 TG
TG
 T
T
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.211-118delG
c.211-118delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/12 INFO_REALIGN_3_PRIME chrX 52186276
chrX:52186338 TA
TA
 T
T
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.211-57delA
c.211-57delA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/12 INFO_REALIGN_3_PRIME chrX 52186338
chrX:52186369 TC
TC
 T
T
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.211-24delC
c.211-24delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/12 INFO_REALIGN_3_PRIME chrX 52186369
chrX:52186388 GC
GC
 G
G
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 splice_region_variant&intron_variant LOW c.211-7delC
c.211-7delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 2/12 INFO_REALIGN_3_PRIME chrX 52186388
chrX:52187244 GC
GC
 G
G
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1044+19delC
c.1044+19delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/12 INFO_REALIGN_3_PRIME chrX 52187244
chrX:52187290 C
C
 T
T
 1 a0001c0001t0001g0012
a0001c0001t0001g0012
 2 NA18999.hp2
NA19067.hp1
NA18999.hp2
NA19067.hp1
 intron_variant MODIFIER c.1044+60C>T
c.1044+60C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/12 chrX 52187290
chrX:52187380 TC
TC
 T
T
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1044+154delC
c.1044+154delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 3/12 INFO_REALIGN_3_PRIME chrX 52187380
chrX:52187929 G
G
 A
A
 2 a0001c0001t0001g0028
a0001c0001t0001g0044
a0001c0001t0001g0028
a0001c0001t0001g0044
 2 HG02735.hp1
HG04184.hp2
HG02735.hp1
HG04184.hp2
 intron_variant MODIFIER c.1249-20G>A
c.1249-20G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 4/12 chrX 52187929
chrX:52188187 A
A
 AC
AC
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1313-18dupC
c.1313-18dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 5/12 INFO_REALIGN_3_PRIME chrX 52188187
chrX:52188312 T
T
 TG
TG
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1392+32dupG
c.1392+32dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 6/12 INFO_REALIGN_3_PRIME chrX 52188312
chrX:52188338 G
G
 A
A
 1 a0001c0001t0001g0011
a0001c0001t0001g0011
 2 NA19065.hp2
NA19090.hp2
NA19065.hp2
NA19090.hp2
 intron_variant MODIFIER c.1392+53G>A
c.1392+53G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 6/12 chrX 52188338
chrX:52188389 TC
TC
 T
T
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1392+106delC
c.1392+106delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 6/12 INFO_REALIGN_3_PRIME chrX 52188389
chrX:52188528 A
A
 AAG
AAG
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1393-146_1393-145i
others(4): Show 
c.1393-146_1393-145insAG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 6/12 chrX 52188528
chrX:52188537 G
G
 A
A
 1 a0001c0001t0001g0053
a0001c0001t0001g0053
 1 NA18948.hp1
NA18948.hp1
 intron_variant MODIFIER c.1393-137G>A
c.1393-137G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 6/12 chrX 52188537
chrX:52188799 G
G
 A
A
 1 a0001c0001t0001g0010
a0001c0001t0001g0010
 2 HG02809.hp2
HG06807.hp1
HG02809.hp2
HG06807.hp1
 intron_variant MODIFIER c.1484+34G>A
c.1484+34G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 chrX 52188799
chrX:52188822 AC
AC
 A
A
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1484+61delC
c.1484+61delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 INFO_REALIGN_3_PRIME chrX 52188822
chrX:52188856 TGCGGC
TGCGGC
 T
T
 2 a0001c0001t0001g0029
a0001c0001t0001g0054
a0001c0001t0001g0029
a0001c0001t0001g0054
 2 HG02647.hp1
HG03195.hp2
HG02647.hp1
HG03195.hp2
 intron_variant MODIFIER c.1484+94_1484+98del
others(5): Show 
c.1484+94_1484+98delGGCGC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 INFO_REALIGN_3_PRIME chrX 52188856
chrX:52188866 C
C
 G
G
 19 a0001c0001t0001g0004
a0001c0001t0001g0007
a0001c0001t0001g0023
others(16): Show 
a0001c0001t0001g0004
a0001c0001t0001g0007
a0001c0001t0001g0023
a0001c0001t0001g0024
a0001c0001t0001g0039
a0001c0001t0001g0040
a0001c0001t0001g0043
a0001c0001t0001g0057
a0001c0001t0007g0056
a0001c0002t0001g0009
a0001c0002t0001g0020
a0001c0002t0001g0021
a0001c0002t0001g0022
a0001c0008t0001g0015
a0002c0003t0001g0041
a0003c0004t0001g0004
a0003c0004t0001g0007
a0011c0007t0001g0052
a0012c0016t0001g0038
 26 HG00741.hp2
HG01070.hp2
HG01081.hp2
others(23): Show 
HG00741.hp2
HG01070.hp2
HG01081.hp2
HG01099.hp1
HG01175.hp2
HG01243.hp1
HG01255.hp1
HG01884.hp1
HG01891.hp1
HG02109.hp2
HG02258.hp1
HG02486.hp1
HG02622.hp2
HG02630.hp2
HG02809.hp1
HG02886.hp2
HG02895.hp1
HG02897.hp1
HG03195.hp1
HG03225.hp1
HG03654.hp1
HG03831.hp2
NA18940.hp1
NA19030.hp1
NA20129.hp1
NA20129.hp2
 intron_variant MODIFIER c.1484+101C>G
c.1484+101C>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 chrX 52188866
chrX:52189075 G
G
 T
T
 2 a0001c0001t0001g0006
a0001c0001t0001g0008
a0001c0001t0001g0006
a0001c0001t0001g0008
 8 HG01070.hp1
HG01071.hp2
HG01943.hp1
others(5): Show 
HG01070.hp1
HG01071.hp2
HG01943.hp1
HG01978.hp2
HG01981.hp1
HG02004.hp1
HG02148.hp1
HG02273.hp1
 intron_variant MODIFIER c.1484+310G>T
c.1484+310G>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 chrX 52189075
chrX:52189095 G
G
 C
C
 3 a0001c0001t0001g0023
a0001c0001t0001g0024
a0012c0016t0001g0038
a0001c0001t0001g0023
a0001c0001t0001g0024
a0012c0016t0001g0038
 3 HG03195.hp1
NA20129.hp1
NA20129.hp2
HG03195.hp1
NA20129.hp1
NA20129.hp2
 intron_variant MODIFIER c.1485-292G>C
c.1485-292G>C
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 chrX 52189095
chrX:52189154 G
G
 A
A
 2 a0001c0001t0001g0030
a0001c0001t0001g0045
a0001c0001t0001g0030
a0001c0001t0001g0045
 2 HG01257.hp2
HG01515.hp1
HG01257.hp2
HG01515.hp1
 intron_variant MODIFIER c.1485-233G>A
c.1485-233G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 chrX 52189154
chrX:52189230 GGAGGTGC
GGAGGTGC
 G
G
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1485-154_1485-148d
others(9): Show 
c.1485-154_1485-148delGGTGCGA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 INFO_REALIGN_3_PRIME chrX 52189230
chrX:52189296 TG
TG
 T
T
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1485-88delG
c.1485-88delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 7/12 INFO_REALIGN_3_PRIME chrX 52189296
chrX:52189618 T
T
 TC
TC
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1607+28dupC
c.1607+28dupC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189618
chrX:52189624 CG
CG
 C
C
 1 a0008c0013t0001g0051
a0008c0013t0001g0051
 1 NA19076.hp1
NA19076.hp1
 intron_variant MODIFIER c.1607+32delG
c.1607+32delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189624
chrX:52189641 CA
CA
 C
C
 1 a0001c0001t0001g0050
a0001c0001t0001g0050
 1 NA19082.hp1
NA19082.hp1
 intron_variant MODIFIER c.1607+50delA
c.1607+50delA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189641
chrX:52189649 TC
TC
 T
T
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1607+57delC
c.1607+57delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189649
chrX:52189689 T
T
 TG
TG
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1607+99dupG
c.1607+99dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189689
chrX:52189696 C
C
 T
T
 3 a0001c0001t0001g0003
a0001c0001t0001g0005
a0001c0001t0005g0005
a0001c0001t0001g0003
a0001c0001t0001g0005
a0001c0001t0005g0005
 13 HG00408.hp1
HG00609.hp1
HG01346.hp1
others(10): Show 
HG00408.hp1
HG00609.hp1
HG01346.hp1
HG02523.hp2
HG02683.hp2
HG03239.hp1
HG03710.hp1
HG04115.hp1
NA18995.hp1
NA19009.hp1
NA19012.hp1
NA19066.hp1
NA19090.hp1
 intron_variant MODIFIER c.1607+102C>T
c.1607+102C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 chrX 52189696
chrX:52189737 T
T
 TG
TG
 1 a0001c0001t0001g0027
a0001c0001t0001g0027
 1 HG01192.hp1
HG01192.hp1
 intron_variant MODIFIER c.1607+147dupG
c.1607+147dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189737
chrX:52189847 G
G
 A
A
 1 a0001c0001t0001g0046
a0001c0001t0001g0046
 1 NA18944.hp1
NA18944.hp1
 intron_variant MODIFIER c.1608-139G>A
c.1608-139G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 chrX 52189847
chrX:52189899 G
G
 A
A
 1 a0001c0001t0001g0047
a0001c0001t0001g0047
 1 NA21309.hp2
NA21309.hp2
 intron_variant MODIFIER c.1608-87G>A
c.1608-87G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 chrX 52189899
chrX:52189906 CG
CG
 C
C
 1 a0005c0006t0008g0014
a0005c0006t0008g0014
 1 NA18965.hp1
NA18965.hp1
 intron_variant MODIFIER c.1608-75delG
c.1608-75delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189906
chrX:52189913 T
T
 TG
TG
 1 a0001c0001t0001g0050
a0001c0001t0001g0050
 1 NA19082.hp1
NA19082.hp1
 intron_variant MODIFIER c.1608-70dupG
c.1608-70dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 9/12 INFO_REALIGN_3_PRIME chrX 52189913
chrX:52190130 C
C
 G
G
 4 a0001c0002t0001g0009
a0001c0002t0001g0020
a0001c0002t0001g0021
others(1): Show 
a0001c0002t0001g0009
a0001c0002t0001g0020
a0001c0002t0001g0021
a0001c0002t0001g0022
 5 HG01884.hp1
HG02486.hp1
HG02622.hp2
others(2): Show 
HG01884.hp1
HG02486.hp1
HG02622.hp2
HG02809.hp1
NA19030.hp1
 intron_variant MODIFIER c.1670+82C>G
c.1670+82C>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190130
chrX:52190139 CA
CA
 C
C
 1 a0008c0013t0001g0051
a0008c0013t0001g0051
 1 NA19076.hp1
NA19076.hp1
 intron_variant MODIFIER c.1670+93delA
c.1670+93delA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190139
chrX:52190151 TG
TG
 T
T
 1 a0008c0013t0001g0051
a0008c0013t0001g0051
 1 NA19076.hp1
NA19076.hp1
 intron_variant MODIFIER c.1670+106delG
c.1670+106delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190151
chrX:52190152 G
G
 A
A
 1 a0001c0008t0001g0015
a0001c0008t0001g0015
 1 HG02258.hp1
HG02258.hp1
 intron_variant MODIFIER c.1670+104G>A
c.1670+104G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190152
chrX:52190182 T
T
 TG
TG
 2 a0001c0001t0001g0013
a0001c0001t0001g0039
a0001c0001t0001g0013
a0001c0001t0001g0039
 3 HG01255.hp1
HG02630.hp1
HG02976.hp2
HG01255.hp1
HG02630.hp1
HG02976.hp2
 intron_variant MODIFIER c.1670+140dupG
c.1670+140dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190182
chrX:52190221 C
C
 CG
CG
 1 a0001c0001t0001g0050
a0001c0001t0001g0050
 1 NA19082.hp1
NA19082.hp1
 intron_variant MODIFIER c.1670+175dupG
c.1670+175dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190221
chrX:52190230 GA
GA
 G
G
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1670+186delA
c.1670+186delA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190230
chrX:52190264 T
T
 TG
TG
 1 a0010c0015t0001g0019
a0010c0015t0001g0019
 1 NA19006.hp1
NA19006.hp1
 intron_variant MODIFIER c.1670+220dupG
c.1670+220dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190264
chrX:52190277 C
C
 T
T
 1 a0001c0012t0001g0049
a0001c0012t0001g0049
 1 HG03704.hp2
HG03704.hp2
 intron_variant MODIFIER c.1670+229C>T
c.1670+229C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190277
chrX:52190278 G
G
 A
A
 1 a0001c0001t0001g0053
a0001c0001t0001g0053
 1 NA18948.hp1
NA18948.hp1
 intron_variant MODIFIER c.1670+230G>A
c.1670+230G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190278
chrX:52190350 C
C
 T
T
 1 a0001c0002t0001g0021
a0001c0002t0001g0021
 1 HG02622.hp2
HG02622.hp2
 intron_variant MODIFIER c.1670+302C>T
c.1670+302C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190350
chrX:52190447 C
C
 G
G
 2 a0001c0001t0001g0027
a0001c0001t0001g0037
a0001c0001t0001g0027
a0001c0001t0001g0037
 2 HG01192.hp1
HG02698.hp1
HG01192.hp1
HG02698.hp1
 intron_variant MODIFIER c.1670+399C>G
c.1670+399C>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190447
chrX:52190447 C
C
 T
T
 1 a0001c0001t0001g0054
a0001c0001t0001g0054
 1 HG03195.hp2
HG03195.hp2
 intron_variant MODIFIER c.1670+399C>T
c.1670+399C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190447
chrX:52190477 G
G
 A
A
 1 a0001c0001t0001g0031
a0001c0001t0001g0031
 1 HG03239.hp2
HG03239.hp2
 intron_variant MODIFIER c.1670+429G>A
c.1670+429G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190477
chrX:52190480 C
C
 CA
CA
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1670+433dupA
c.1670+433dupA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190480
chrX:52190495 A
A
 AG
AG
 1 a0002c0010t0001g0018
a0002c0010t0001g0018
 1 HG00738.hp1
HG00738.hp1
 intron_variant MODIFIER c.1670+450dupG
c.1670+450dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190495
chrX:52190528 G
G
 A
A
 3 a0001c0001t0001g0032
a0001c0001t0001g0042
a0001c0001t0001g0048
a0001c0001t0001g0032
a0001c0001t0001g0042
a0001c0001t0001g0048
 3 NA18974.hp1
NA19004.hp1
NA19010.hp1
NA18974.hp1
NA19004.hp1
NA19010.hp1
 intron_variant MODIFIER c.1671-466G>A
c.1671-466G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190528
chrX:52190529 C
C
 CT
CT
 1 a0002c0010t0001g0018
a0002c0010t0001g0018
 1 HG00738.hp1
HG00738.hp1
 intron_variant MODIFIER c.1671-463dupT
c.1671-463dupT
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190529
chrX:52190556 TC
TC
 T
T
 1 a0008c0013t0001g0051
a0008c0013t0001g0051
 1 NA19076.hp1
NA19076.hp1
 intron_variant MODIFIER c.1671-436delC
c.1671-436delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190556
chrX:52190585 AG
AG
 A
A
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1671-406delG
c.1671-406delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190585
chrX:52190604 GC
GC
 G
G
 1 a0002c0010t0001g0018
a0002c0010t0001g0018
 1 HG00738.hp1
HG00738.hp1
 intron_variant MODIFIER c.1671-388delC
c.1671-388delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190604
chrX:52190680 A
A
 AG
AG
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1671-312dupG
c.1671-312dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190680
chrX:52190751 A
A
 C
C
 13 a0001c0001t0001g0004
a0001c0001t0001g0007
a0001c0001t0001g0023
others(10): Show 
a0001c0001t0001g0004
a0001c0001t0001g0007
a0001c0001t0001g0023
a0001c0001t0001g0024
a0001c0001t0001g0039
a0001c0001t0001g0043
a0001c0001t0001g0057
a0001c0001t0007g0056
a0001c0008t0001g0015
a0002c0003t0001g0041
a0003c0004t0001g0004
a0003c0004t0001g0007
a0012c0016t0001g0038
 19 HG01070.hp2
HG01081.hp2
HG01099.hp1
others(16): Show 
HG01070.hp2
HG01081.hp2
HG01099.hp1
HG01175.hp2
HG01243.hp1
HG01255.hp1
HG01891.hp1
HG02109.hp2
HG02258.hp1
HG02630.hp2
HG02886.hp2
HG02895.hp1
HG02897.hp1
HG03195.hp1
HG03225.hp1
HG03831.hp2
NA18940.hp1
NA20129.hp1
NA20129.hp2
 intron_variant MODIFIER c.1671-243A>C
c.1671-243A>C
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190751
chrX:52190774 TC
TC
 T
T
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1671-218delC
c.1671-218delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190774
chrX:52190776 CG
CG
 C
C
 1 a0011c0007t0001g0052
a0011c0007t0001g0052
 1 HG03654.hp1
HG03654.hp1
 intron_variant MODIFIER c.1671-214delG
c.1671-214delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190776
chrX:52190841 G
G
 GT
GT
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1671-150dupT
c.1671-150dupT
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190841
chrX:52190848 A
A
 G
G
 1 a0011c0007t0001g0052
a0011c0007t0001g0052
 1 HG03654.hp1
HG03654.hp1
 intron_variant MODIFIER c.1671-146A>G
c.1671-146A>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 chrX 52190848
chrX:52190852 A
A
 AGT
AGT
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1671-140_1671-139d
others(4): Show 
c.1671-140_1671-139dupTG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190852
chrX:52190857 A
A
 AG
AG
 1 a0002c0010t0001g0018
a0002c0010t0001g0018
 1 HG00738.hp1
HG00738.hp1
 intron_variant MODIFIER c.1671-134dupG
c.1671-134dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190857
chrX:52190906 CG
CG
 C
C
 1 a0002c0010t0001g0018
a0002c0010t0001g0018
 1 HG00738.hp1
HG00738.hp1
 intron_variant MODIFIER c.1671-85delG
c.1671-85delG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190906
chrX:52190937 C
C
 CG
CG
 1 a0011c0007t0001g0052
a0011c0007t0001g0052
 1 HG03654.hp1
HG03654.hp1
 intron_variant MODIFIER c.1671-56dupG
c.1671-56dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 10/12 INFO_REALIGN_3_PRIME chrX 52190937
chrX:52191118 C
C
 A
A
 12 a0001c0001t0001g0004
a0001c0001t0001g0007
a0001c0001t0001g0023
others(9): Show 
a0001c0001t0001g0004
a0001c0001t0001g0007
a0001c0001t0001g0023
a0001c0001t0001g0024
a0001c0001t0001g0039
a0001c0001t0001g0043
a0001c0001t0001g0057
a0001c0001t0007g0056
a0001c0008t0001g0015
a0003c0004t0001g0004
a0003c0004t0001g0007
a0012c0016t0001g0038
 18 HG01070.hp2
HG01081.hp2
HG01099.hp1
others(15): Show 
HG01070.hp2
HG01081.hp2
HG01099.hp1
HG01175.hp2
HG01243.hp1
HG01255.hp1
HG01891.hp1
HG02109.hp2
HG02258.hp1
HG02630.hp2
HG02886.hp2
HG02895.hp1
HG02897.hp1
HG03195.hp1
HG03225.hp1
NA18940.hp1
NA20129.hp1
NA20129.hp2
 intron_variant MODIFIER c.1785+10C>A
c.1785+10C>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 chrX 52191118
chrX:52191173 CTTGGTCG
others(17): Show 
CTTGGTCGAGGCCTCCTTCCCATTA
 C
C
 1 a0001c0001t0001g0033
a0001c0001t0001g0033
 1 NA18980.hp1
NA18980.hp1
 intron_variant MODIFIER c.1785+66_1785+89del
others(24): Show 
c.1785+66_1785+89delTTGGTCGAGGCCTCCTTCCCATTA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 chrX 52191173
chrX:52191190 TC
TC
 T
T
 1 a0006c0018t0002g0016
a0006c0018t0002g0016
 1 NA18982.hp1
NA18982.hp1
 intron_variant MODIFIER c.1785+85delC
c.1785+85delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 INFO_REALIGN_3_PRIME chrX 52191190
chrX:52191233 A
A
 AG
AG
 1 a0001c0001t0001g0042
a0001c0001t0001g0042
 1 NA18974.hp1
NA18974.hp1
 intron_variant MODIFIER c.1785+127dupG
c.1785+127dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 INFO_REALIGN_3_PRIME chrX 52191233
chrX:52191340 C
C
 CA
CA
 1 a0011c0007t0001g0052
a0011c0007t0001g0052
 1 HG03654.hp1
HG03654.hp1
 intron_variant MODIFIER c.1786-90dupA
c.1786-90dupA
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 INFO_REALIGN_3_PRIME chrX 52191340
chrX:52191351 C
C
 T
T
 1 a0001c0001t0001g0057
a0001c0001t0001g0057
 1 HG02886.hp2
HG02886.hp2
 intron_variant MODIFIER c.1786-80C>T
c.1786-80C>T
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 chrX 52191351
chrX:52191366 C
C
 CG
CG
 1 a0011c0007t0001g0052
a0011c0007t0001g0052
 1 HG03654.hp1
HG03654.hp1
 intron_variant MODIFIER c.1786-62dupG
c.1786-62dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 INFO_REALIGN_3_PRIME chrX 52191366
chrX:52191390 T
T
 TG
TG
 1 a0010c0015t0001g0019
a0010c0015t0001g0019
 1 NA19006.hp1
NA19006.hp1
 intron_variant MODIFIER c.1786-37dupG
c.1786-37dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 INFO_REALIGN_3_PRIME chrX 52191390
chrX:52191421 TC
TC
 T
T
 1 a0011c0007t0001g0052
a0011c0007t0001g0052
 1 HG03654.hp1
HG03654.hp1
 splice_region_variant&intron_variant LOW c.1786-8delC
c.1786-8delC
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 11/12 INFO_REALIGN_3_PRIME chrX 52191421
chrX:52191929 A
A
 C
C
 1 a0001c0001t0001g0036
a0001c0001t0001g0036
 1 HG01433.hp1
HG01433.hp1
 intron_variant MODIFIER c.2216+68A>C
c.2216+68A>C
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/12 chrX 52191929
chrX:52191933 C
C
 A
A
 1 a0001c0001t0001g0057
a0001c0001t0001g0057
 1 HG02886.hp2
HG02886.hp2
 intron_variant MODIFIER c.2216+72C>A
c.2216+72C>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/12 chrX 52191933
chrX:52191935 A
A
 G
G
 69 a0001c0001t0001g0001
a0001c0001t0001g0002
a0001c0001t0001g0003
others(66): Show 
a0001c0001t0001g0001
a0001c0001t0001g0002
a0001c0001t0001g0003
a0001c0001t0001g0004
a0001c0001t0001g0005
a0001c0001t0001g0006
a0001c0001t0001g0007
a0001c0001t0001g0008
a0001c0001t0001g0010
a0001c0001t0001g0011
a0001c0001t0001g0012
a0001c0001t0001g0013
a0001c0001t0001g0017
a0001c0001t0001g0023
a0001c0001t0001g0024
a0001c0001t0001g0025
a0001c0001t0001g0027
a0001c0001t0001g0028
a0001c0001t0001g0029
a0001c0001t0001g0030
a0001c0001t0001g0031
a0001c0001t0001g0032
a0001c0001t0001g0033
a0001c0001t0001g0035
a0001c0001t0001g0036
a0001c0001t0001g0037
a0001c0001t0001g0039
a0001c0001t0001g0040
a0001c0001t0001g0042
a0001c0001t0001g0043
a0001c0001t0001g0044
a0001c0001t0001g0045
a0001c0001t0001g0046
a0001c0001t0001g0047
a0001c0001t0001g0048
a0001c0001t0001g0050
a0001c0001t0001g0053
a0001c0001t0001g0054
a0001c0001t0001g0055
a0001c0001t0001g0057
a0001c0001t0003g0034
a0001c0001t0004g0001
a0001c0001t0005g0005
a0001c0001t0006g0001
a0001c0001t0007g0056
a0001c0002t0001g0009
a0001c0002t0001g0020
a0001c0002t0001g0021
a0001c0002t0001g0022
a0001c0008t0001g0015
a0001c0012t0001g0049
a0001c0017t0001g0001
a0002c0003t0001g0002
a0002c0003t0001g0026
a0002c0003t0001g0041
a0002c0009t0001g0001
a0002c0010t0001g0018
a0003c0004t0001g0004
a0003c0004t0001g0007
a0004c0005t0001g0001
a0004c0005t0001g0002
a0005c0006t0008g0014
a0006c0018t0002g0016
a0007c0011t0001g0002
a0008c0013t0001g0051
a0009c0014t0001g0002
a0010c0015t0001g0019
a0011c0007t0001g0052
a0012c0016t0001g0038
 220 HG00140.hp1
HG00280.hp1
HG00408.hp1
others(217): Show 
HG00140.hp1
HG00280.hp1
HG00408.hp1
HG00408.hp2
HG00438.hp1
HG00438.hp2
HG00558.hp1
HG00558.hp2
HG00597.hp1
HG00597.hp2
HG00609.hp1
HG00621.hp1
HG00639.hp1
HG00639.hp2
HG00673.hp1
HG00735.hp1
HG00735.hp2
HG00738.hp1
HG00741.hp1
HG00741.hp2
HG01069.hp1
HG01070.hp1
HG01070.hp2
HG01071.hp1
HG01071.hp2
HG01081.hp1
HG01081.hp2
HG01099.hp1
HG01106.hp1
HG01167.hp1
HG01175.hp1
HG01175.hp2
HG01192.hp1
HG01243.hp1
HG01255.hp1
HG01257.hp1
HG01257.hp2
HG01261.hp1
HG01346.hp1
HG01346.hp2
HG01361.hp1
HG01361.hp2
HG01433.hp1
HG01496.hp1
HG01496.hp2
HG01515.hp1
HG01884.hp1
HG01884.hp2
HG01891.hp1
HG01891.hp2
HG01928.hp1
HG01934.hp1
HG01943.hp1
HG01952.hp1
HG01978.hp1
HG01978.hp2
HG01981.hp1
HG01981.hp2
HG02004.hp1
HG02004.hp2
HG02027.hp1
HG02040.hp1
HG02055.hp1
HG02071.hp1
HG02074.hp1
HG02080.hp1
HG02080.hp2
HG02083.hp1
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02135.hp1
HG02145.hp1
HG02148.hp1
HG02148.hp2
HG02258.hp1
HG02273.hp1
HG02273.hp2
HG02451.hp1
HG02451.hp2
HG02486.hp1
HG02523.hp1
HG02523.hp2
HG02572.hp1
HG02602.hp1
HG02615.hp1
HG02615.hp2
HG02622.hp1
HG02622.hp2
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02735.hp1
HG02738.hp1
HG02809.hp1
HG02809.hp2
HG02886.hp1
HG02886.hp2
HG02895.hp1
HG02896.hp1
HG02896.hp2
HG02897.hp1
HG02897.hp2
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG02976.hp1
HG02976.hp2
HG03130.hp1
HG03139.hp1
HG03195.hp1
HG03195.hp2
HG03209.hp1
HG03225.hp1
HG03239.hp1
HG03239.hp2
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03654.hp1
HG03704.hp1
HG03704.hp2
HG03710.hp1
HG03831.hp1
HG03831.hp2
HG03942.hp1
HG04115.hp1
HG04184.hp1
HG04184.hp2
HG04204.hp1
HG06807.hp1
HG06807.hp2
NA18522.hp1
NA18612.hp1
NA18747.hp1
NA18940.hp1
NA18944.hp1
NA18945.hp1
NA18946.hp1
NA18946.hp2
NA18948.hp1
NA18952.hp1
NA18954.hp1
NA18954.hp2
NA18955.hp1
NA18959.hp1
NA18960.hp1
NA18961.hp1
NA18962.hp1
NA18965.hp1
NA18966.hp1
NA18967.hp1
NA18970.hp1
NA18971.hp1
NA18974.hp1
NA18977.hp1
NA18980.hp1
NA18980.hp2
NA18982.hp1
NA18983.hp1
NA18984.hp1
NA18986.hp1
NA18988.hp1
NA18990.hp1
NA18994.hp1
NA18995.hp1
NA18999.hp1
NA18999.hp2
NA19000.hp1
NA19004.hp1
NA19005.hp1
NA19006.hp1
NA19007.hp1
NA19009.hp1
NA19010.hp1
NA19010.hp2
NA19011.hp1
NA19011.hp2
NA19012.hp1
NA19030.hp1
NA19030.hp2
NA19043.hp1
NA19055.hp1
NA19056.hp1
NA19058.hp1
NA19060.hp1
NA19062.hp1
NA19063.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19067.hp1
NA19068.hp1
NA19070.hp1
NA19075.hp1
NA19076.hp1
NA19079.hp1
NA19081.hp1
NA19081.hp2
NA19082.hp1
NA19083.hp1
NA19085.hp1
NA19086.hp1
NA19088.hp1
NA19089.hp1
NA19090.hp1
NA19090.hp2
NA19091.hp1
NA20129.hp1
NA20129.hp2
NA20300.hp1
NA20300.hp2
NA20752.hp1
NA20905.hp1
NA21309.hp1
NA21309.hp2
 intron_variant MODIFIER c.2216+74A>G
c.2216+74A>G
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/12 chrX 52191935
chrX:52191939 T
T
 TG
TG
 2 a0002c0003t0001g0041
a0008c0013t0001g0051
a0002c0003t0001g0041
a0008c0013t0001g0051
 2 HG03831.hp2
NA19076.hp1
HG03831.hp2
NA19076.hp1
 intron_variant MODIFIER c.2216+83dupG
c.2216+83dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/12 INFO_REALIGN_3_PRIME chrX 52191939
chrX:52191948 T
T
 TG
TG
 1 a0002c0010t0001g0018
a0002c0010t0001g0018
 1 HG00738.hp1
HG00738.hp1
 intron_variant MODIFIER c.2216+92dupG
c.2216+92dupG
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/12 INFO_REALIGN_3_PRIME chrX 52191948
chrX:52191957 C
C
 A
A
 1 a0001c0001t0003g0034
a0001c0001t0003g0034
 1 HG01884.hp2
HG01884.hp2
 intron_variant MODIFIER c.2216+96C>A
c.2216+96C>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/12 chrX 52191957
chrX:52191973 G
G
 A
A
 1 a0001c0001t0001g0035
a0001c0001t0001g0035
 1 HG01891.hp2
HG01891.hp2
 intron_variant MODIFIER c.2217-84G>A
c.2217-84G>A
MAGED4 ENSG00000154545.17 transcript ENST00000471932.6 protein_coding 12/12 chrX 52191973

  • GeneCards
  • OpenTarget
  • The Human Protein Atlas
  • Gnomad v4.1.0
  • PhewebJP (Japan)
  • UKB-TOPMed (UMich) (UK and US)
  • FinnGen r11 (Finland)
  • KoGES (Korean)
  • Mouse Phenotype
  • Zebra Phenotype
  • TogoVar

  • DNA
  • Satellite
  • All Snps 1.4.2
  • RC
  • snRNA
  • SINE
  • GC %
  • Simple_repeat
  • RNA
  • Retroposon
  • Unknown
  • Low_complexity
  • LINE
  • scRNA
  • CpG Islands
  • Phastcons (20 way)
  • srpRNA
  • Common Snps 1.4.2
  • rRNA
  • LTR
  • tRNA

  • Axiom Genome-Wide Array (Japonica Array V1)
  • Axiom Genome-Wide Array (Japonica Array V2)
  • Axiom Genome-Wide ASI Array V1 (ASI V1)
​

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