Joint Open Genome and Omics Platform (JoGo)

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geneid	84631
ensemblid	ENSG00000185985.11
hgncid	13449
symbol	SLITRK2
name	SLIT and NTRK like family member 2
refseq_nuc	NM_032539.5
refseq_prot	NP_115928.1
ensembl_nuc	ENST00000335565.6
ensembl_prot	ENSP00000334374.5
mane_status	MANE Select
chr	chrX
start	145817829
end	145829856
strand	+
ver	v1.2
region	chrX:145817829-145829856
region5000	chrX:145812829-145834856
regionname0	SLITRK2_chrX_145817829_145829856
regionname5000	SLITRK2_chrX_145812829_145834856

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	845	269	75	46	102	13	31	78	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002	0/0	845	54	0	8	44	0	2	37	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0003	0/0	217	1	0	0	1	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0004	0/0	845	1	0	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0005	0/0	674	1	0	0	1	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/1	2538	191	36	38	88	10	18	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0002	0/0	2538	54	0	8	44	0	2	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0003	0/0	2538	44	14	5	13	1	11	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0004	0/0	2538	11	9	2	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0005	0/0	2538	9	8	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0006	0/0	2538	5	3	0	0	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0007	1/0	2538	4	1	0	0	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0008	0/0	2538	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0009	0/0	2530	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0010	0/0	2538	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0011	0/0	2538	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0012	0/0	2538	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0013	0/0	2539	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
c0014	0/0	2538	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	5881	116	19	26	48	8	14	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0002	0/0	5881	56	11	5	26	1	13	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0003	0/0	5885	51	5	7	37	0	2	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0004	0/0	5881	8	6	1	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0005	0/0	5881	6	0	0	6	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0006	0/0	5880	6	0	4	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0007	0/0	5882	6	0	0	6	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0008	0/0	5885	6	5	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0009	0/0	5882	4	3	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0010	1/0	5884	4	1	0	0	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0011	0/0	5884	4	3	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0012	0/0	5881	3	0	2	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0013	0/0	5881	3	0	0	3	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0014	0/0	5881	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0015	0/0	5880	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0016	0/0	5881	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0017	0/0	5881	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0018	0/0	5884	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0019	0/0	5885	2	1	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0020	0/0	5885	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0021	0/0	5885	2	1	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0022	0/0	5886	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0023	0/0	5884	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0024	0/0	5885	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0025	0/0	5881	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0026	0/0	5881	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0027	0/0	5880	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0028	0/0	5886	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0029	0/0	5887	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0030	0/0	5882	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0031	0/0	5881	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0032	0/0	5881	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0033	0/0	5880	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0034	0/0	5881	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0035	0/0	5881	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0036	0/0	5881	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0037	0/0	5882	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0038	0/0	5882	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0039	0/0	5883	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0040	0/0	5885	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0041	0/0	5885	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0042	0/0	5886	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0043	0/0	5881	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0044	0/0	5881	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0045	0/0	5881	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0046	0/0	5884	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0047	0/0	5885	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0048	0/0	5885	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0049	0/0	5886	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0050	0/0	5885	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0051	0/0	5885	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0052	0/0	5885	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0053	0/0	5881	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0054	0/0	5881	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
t0055	0/0	5881	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/1	76	10	16	38	5	6	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0002	0/0	33	0	7	25	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0003	0/0	26	0	8	11	2	5	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0004	0/0	22	3	6	10	1	2	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0005	0/0	16	2	1	12	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0006	0/0	11	4	0	2	0	5	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0007	0/0	8	6	1	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0008	0/0	7	0	0	6	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0009	0/0	6	0	0	6	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0010	0/0	6	3	0	3	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0011	0/0	4	0	0	4	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0012	0/0	4	0	0	2	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0013	0/0	4	1	1	1	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0014	0/0	4	4	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0015	0/0	3	3	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0016	0/0	3	1	1	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0017	1/0	3	1	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0018	0/0	3	3	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0019	0/0	3	3	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0020	0/0	2	0	2	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0021	0/0	2	1	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0022	0/0	2	0	1	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0023	0/0	2	0	0	1	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0024	0/0	2	0	2	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0025	0/0	2	0	0	1	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0026	0/0	2	1	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0027	0/0	2	1	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0028	0/0	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0029	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0030	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0031	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0032	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0033	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0034	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0035	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0036	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0037	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0038	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0039	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0040	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0041	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0042	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0043	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0044	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0045	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0046	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0047	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0048	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0049	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0050	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0051	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0052	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0053	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0054	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0055	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0056	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0057	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0058	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0059	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0060	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0061	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0062	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0063	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0064	0/0	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0065	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0066	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0067	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0068	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0069	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0070	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0071	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0072	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0073	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0074	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0075	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0076	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0077	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0078	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0079	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0080	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0081	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0082	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0083	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0084	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0085	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0086	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0087	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0088	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0089	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0090	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0091	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0092	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0093	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
g0094	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/1	2538	191	36	38	88	10	18	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003	0/0	2538	44	14	5	13	1	11	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004	0/0	2538	11	9	2	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0005	0/0	2538	9	8	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0006	0/0	2538	5	3	0	0	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0007	1/0	2538	4	1	0	0	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0008	0/0	2538	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0011	0/0	2538	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0012	0/0	2538	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0014	0/0	2538	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002	0/0	2538	54	0	8	44	0	2	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0003c0009	0/0	2530	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0004c0010	0/0	2538	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0005c0013	0/0	2539	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	8418	115	19	26	47	8	14	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0002	0/0	8418	19	0	2	16	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0003	0/0	8422	2	1	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0004	0/0	8418	5	4	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0005	0/0	8418	6	0	0	6	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0006	0/0	8417	6	0	4	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0007	0/0	8419	6	0	0	6	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0008	0/0	8422	4	4	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0009	0/0	8419	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0011	0/0	8421	3	2	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0012	0/0	8418	3	0	2	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0013	0/0	8418	3	0	0	3	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0014	0/0	8418	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0016	0/0	8418	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0025	0/0	8418	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0026	0/0	8418	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0027	0/0	8417	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0030	0/0	8419	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0031	0/0	8418	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0032	0/0	8418	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0033	0/0	8417	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0035	0/0	8418	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0038	0/0	8419	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0040	0/0	8422	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0043	0/0	8418	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0045	0/0	8418	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0054	0/0	8418	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0001t0055	0/0	8418	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003t0002	0/0	8418	35	11	3	9	1	11	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003t0009	0/0	8419	3	3	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003t0015	0/0	8417	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003t0017	0/0	8418	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003t0034	0/0	8418	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003t0036	0/0	8418	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0003t0053	0/0	8418	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0018	0/0	8421	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0019	0/0	8422	2	1	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0020	0/0	8422	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0022	0/0	8423	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0028	0/0	8423	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0039	0/0	8420	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0041	0/0	8422	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0004t0047	0/0	8422	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0005t0003	0/0	8422	4	4	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0005t0008	0/0	8422	2	1	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0005t0023	0/0	8421	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0005t0051	0/0	8422	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0006t0004	0/0	8418	3	2	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0006t0037	0/0	8419	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0006t0044	0/0	8418	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0007t0010	1/0	8421	4	1	0	0	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0008t0021	0/0	8422	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0008t0042	0/0	8423	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0011t0018	0/0	8421	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0012t0011	0/0	8421	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0001c0014t0001	0/0	8418	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0003	0/0	8422	45	0	7	37	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0021	0/0	8422	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0024	0/0	8422	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0029	0/0	8424	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0046	0/0	8421	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0048	0/0	8422	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0049	0/0	8423	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0050	0/0	8422	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0002c0002t0052	0/0	8422	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0003c0009t0017	0/0	8410	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0004c0010t0002	0/0	8418	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856
a0005c0013t0002	0/0	8419	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	copy fasta	chrX	145812829	145834856

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	52	9	13	19	5	5	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0003	0/0	17	0	4	7	1	5	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0004	0/0	15	2	3	8	1	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0008	0/0	4	0	0	3	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0010	0/0	3	1	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0012	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0013	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0020	0/0	2	0	2	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0023	0/0	2	0	0	1	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0024	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0025	0/0	2	0	0	1	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0026	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0027	0/0	2	1	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0060	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0062	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0069	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0073	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0076	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0077	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0082	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0083	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0087	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0001g0088	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0001	0/0	7	0	0	7	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0003	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0008	0/0	3	0	0	3	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0012	0/0	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0016	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0026	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0048	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0061	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0070	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0002g0078	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0003g0005	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0003g0029	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0004g0018	0/0	3	3	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0004g0074	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0004g0079	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0005g0001	0/0	4	0	0	4	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0005g0055	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0005g0068	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0006g0001	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0006g0003	0/0	3	0	2	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0006g0004	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0006g0010	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0007g0001	0/0	4	0	0	4	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0007g0004	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0007g0013	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0008g0053	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0008g0066	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0008g0067	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0008g0093	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0009g0075	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0011g0017	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0011g0063	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0011g0090	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0012g0001	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0012g0004	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0012g0012	0/0	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0013g0001	0/0	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0013g0003	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0014g0014	0/0	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0016g0001	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0016g0091	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0025g0094	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0026g0059	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0027g0014	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0030g0056	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0031g0003	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0032g0001	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0033g0001	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0035g0013	0/0	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0038g0001	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0040g0013	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0043g0001	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0045g0002	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0054g0024	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0001t0055g0004	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0003	0/0	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0006	0/0	8	2	0	1	0	5	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0007	0/0	8	6	1	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0009	0/0	3	0	0	3	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0011	0/0	4	0	0	4	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0015	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0016	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0022	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0031	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0033	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0045	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0046	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0047	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0049	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0050	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0002g0052	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0009g0006	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0009g0015	0/0	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0015g0009	0/0	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0017g0006	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0034g0009	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0036g0022	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0003t0053g0030	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0018g0037	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0019g0003	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0019g0010	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0020g0039	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0020g0040	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0022g0057	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0022g0072	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0028g0071	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0039g0089	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0041g0038	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0004t0047g0041	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0005t0003g0005	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0005t0003g0010	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0005t0003g0019	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0005t0003g0042	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0005t0008g0004	0/0	2	1	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0005t0023g0019	0/0	2	2	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0005t0051g0092	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0006t0004g0014	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0006t0004g0021	0/0	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0006t0004g0044	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0006t0037g0080	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0006t0044g0021	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0007t0010g0017	1/0	2	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0007t0010g0064	0/0	1	0	0	0	1	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0007t0010g0065	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0008t0021g0016	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0008t0042g0006	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0011t0018g0036	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0012t0011g0058	0/0	1	1	0	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0001c0014t0001g0003	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0002	0/0	30	0	6	23	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0005	0/0	9	0	1	8	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0028	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0043	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0081	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0084	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0085	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0003g0086	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0021g0005	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0024g0005	0/0	2	0	0	2	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0029g0054	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0046g0002	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0048g0028	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0049g0002	0/0	1	0	1	0	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0050g0005	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0002c0002t0052g0005	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0003c0009t0017g0034	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0004c0010t0002g0051	0/0	1	0	0	0	0	1	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
a0005c0013t0002g0004	0/0	1	0	0	1	0	0	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0006	t0004	g0021	EUR	GBR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00099	hp2	a0001	c0001	t0001	g0023	EUR	GBR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00140	hp1	a0001	c0001	t0001	g0004	EUR	GBR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00280	hp1	a0001	c0001	t0001	g0003	EUR	FIN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00323	hp1	a0001	c0003	t0002	g0003	EUR	FIN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00323	hp2	a0001	c0001	t0012	g0012	EUR	FIN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00408	hp1	a0002	c0002	t0003	g0002	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00408	hp2	a0001	c0001	t0007	g0004	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00423	hp1	a0001	c0001	t0001	g0004	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00423	hp2	a0001	c0001	t0001	g0004	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00438	hp1	a0001	c0001	t0001	g0004	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00544	hp1	a0001	c0001	t0013	g0003	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00558	hp1	a0001	c0003	t0002	g0006	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00558	hp2	a0001	c0001	t0002	g0001	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00621	hp1	a0002	c0002	t0003	g0002	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00639	hp1	a0001	c0001	t0001	g0003	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00639	hp2	a0001	c0005	t0008	g0004	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00642	hp1	a0001	c0003	t0053	g0030	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00735	hp1	a0001	c0001	t0012	g0004	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00738	hp1	a0001	c0001	t0001	g0020	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00741	hp1	a0001	c0001	t0001	g0020	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01069	hp1	a0001	c0001	t0001	g0004	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01071	hp1	a0001	c0001	t0001	g0027	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01081	hp1	a0001	c0001	t0001	g0013	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01081	hp2	a0001	c0003	t0036	g0022	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01099	hp1	a0001	c0001	t0001	g0088	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01106	hp1	a0001	c0001	t0012	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01109	hp1	a0001	c0004	t0019	g0003	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01167	hp1	a0001	c0001	t0006	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01168	hp1	a0001	c0001	t0002	g0016	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01168	hp2	a0001	c0001	t0006	g0004	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01175	hp1	a0001	c0003	t0002	g0007	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01192	hp1	a0002	c0002	t0003	g0002	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01243	hp1	a0001	c0001	t0011	g0090	AMR	PUR	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01255	hp1	a0001	c0001	t0001	g0004	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01256	hp1	a0001	c0001	t0001	g0003	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01257	hp1	a0002	c0002	t0003	g0002	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01257	hp2	a0001	c0001	t0006	g0003	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01258	hp1	a0002	c0002	t0003	g0002	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01261	hp1	a0002	c0002	t0003	g0002	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01346	hp1	a0001	c0003	t0002	g0052	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01346	hp2	a0001	c0001	t0001	g0024	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01358	hp1	a0001	c0001	t0001	g0004	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01361	hp2	a0001	c0003	t0002	g0050	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01433	hp1	a0002	c0002	t0003	g0005	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01516	hp1	a0001	c0001	t0035	g0013	EUR	IBS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01884	hp1	a0001	c0003	t0002	g0045	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01884	hp2	a0001	c0001	t0001	g0083	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01891	hp1	a0001	c0005	t0003	g0010	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01891	hp2	a0001	c0001	t0001	g0032	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01934	hp1	a0001	c0001	t0004	g0079	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01943	hp1	a0001	c0001	t0006	g0003	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01952	hp1	a0001	c0001	t0002	g0003	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01975	hp1	a0001	c0001	t0001	g0003	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01975	hp2	a0002	c0002	t0003	g0002	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01978	hp1	a0001	c0001	t0054	g0024	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01978	hp2	a0001	c0001	t0001	g0003	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02027	hp1	a0001	c0001	t0016	g0091	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02040	hp1	a0001	c0003	t0002	g0011	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02055	hp1	a0001	c0001	t0001	g0004	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02071	hp1	a0002	c0002	t0003	g0081	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02074	hp1	a0001	c0001	t0001	g0004	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02080	hp1	a0002	c0002	t0003	g0084	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02080	hp2	a0001	c0001	t0001	g0004	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02083	hp1	a0002	c0002	t0003	g0002	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02129	hp1	a0001	c0001	t0001	g0004	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02132	hp1	a0001	c0001	t0002	g0026	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02135	hp1	a0002	c0002	t0003	g0002	EAS	KHV	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02145	hp1	a0001	c0003	t0009	g0015	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02148	hp2	a0002	c0002	t0049	g0002	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02155	hp1	a0001	c0003	t0002	g0011	EAS	CDX	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02155	hp2	a0001	c0001	t0013	g0001	EAS	CDX	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02165	hp2	a0001	c0001	t0002	g0078	EAS	CDX	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02257	hp1	a0001	c0006	t0044	g0021	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02257	hp2	a0001	c0003	t0002	g0007	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02258	hp1	a0001	c0001	t0004	g0018	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02280	hp2	a0001	c0004	t0019	g0010	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02293	hp2	a0001	c0001	t0043	g0001	AMR	PEL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02451	hp1	a0001	c0003	t0002	g0007	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02451	hp2	a0001	c0001	t0004	g0018	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02572	hp1	a0001	c0003	t0002	g0006	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02602	hp1	a0002	c0002	t0021	g0005	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02615	hp1	a0001	c0003	t0002	g0007	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02615	hp2	a0001	c0011	t0018	g0036	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02622	hp1	a0001	c0004	t0020	g0040	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02622	hp2	a0001	c0001	t0001	g0082	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02630	hp1	a0001	c0001	t0001	g0026	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02630	hp2	a0001	c0012	t0011	g0058	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02683	hp1	a0001	c0007	t0010	g0017	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02698	hp1	a0001	c0003	t0002	g0047	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02723	hp1	a0001	c0004	t0022	g0072	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02723	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02735	hp1	a0001	c0003	t0002	g0031	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02738	hp1	a0001	c0001	t0002	g0070	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02809	hp1	a0001	c0001	t0008	g0067	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02809	hp2	a0001	c0001	t0038	g0001	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02818	hp1	a0001	c0003	t0009	g0006	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02818	hp2	a0001	c0004	t0020	g0039	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02886	hp1	a0001	c0001	t0001	g0010	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02886	hp2	a0001	c0001	t0008	g0053	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02895	hp1	a0001	c0005	t0023	g0019	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02896	hp1	a0001	c0001	t0003	g0005	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02896	hp2	a0001	c0001	t0014	g0014	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02922	hp1	a0001	c0001	t0027	g0014	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02922	hp2	a0001	c0001	t0040	g0013	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02970	hp1	a0001	c0008	t0042	g0006	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02970	hp2	a0001	c0004	t0018	g0037	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02976	hp1	a0001	c0001	t0014	g0014	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02976	hp2	a0001	c0005	t0003	g0005	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03017	hp1	a0001	c0003	t0002	g0006	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03041	hp2	a0001	c0001	t0008	g0093	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03098	hp1	a0001	c0006	t0004	g0044	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03130	hp1	a0001	c0008	t0021	g0016	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03195	hp1	a0001	c0005	t0003	g0042	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03195	hp2	a0001	c0001	t0011	g0017	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03209	hp1	a0001	c0005	t0051	g0092	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03225	hp1	a0001	c0001	t0001	g0004	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03239	hp2	a0001	c0003	t0002	g0006	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03453	hp1	a0001	c0001	t0001	g0077	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03453	hp2	a0001	c0004	t0028	g0071	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03486	hp1	a0001	c0003	t0002	g0033	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03486	hp2	a0001	c0003	t0002	g0006	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03490	hp1	a0001	c0003	t0002	g0006	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03491	hp1	a0001	c0001	t0001	g0003	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03491	hp2	a0001	c0003	t0002	g0007	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03492	hp1	a0001	c0001	t0001	g0003	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03516	hp1	a0001	c0007	t0010	g0065	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03516	hp2	a0001	c0001	t0008	g0066	AFR	ESN	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03540	hp1	a0001	c0001	t0001	g0027	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03540	hp2	a0001	c0004	t0047	g0041	AFR	GWD	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03579	hp1	a0001	c0003	t0002	g0007	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03669	hp1	a0001	c0003	t0002	g0022	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03669	hp2	a0001	c0001	t0001	g0003	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03688	hp1	a0001	c0001	t0032	g0001	SAS	STU	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03704	hp1	a0001	c0001	t0001	g0003	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03704	hp2	a0001	c0001	t0001	g0004	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03831	hp1	a0004	c0010	t0002	g0051	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03831	hp2	a0001	c0001	t0001	g0008	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03834	hp1	a0002	c0002	t0003	g0002	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03834	hp2	a0001	c0003	t0002	g0006	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03927	hp1	a0001	c0001	t0001	g0012	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03927	hp2	a0001	c0003	t0002	g0049	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03942	hp1	a0001	c0001	t0055	g0004	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG04115	hp1	a0001	c0001	t0001	g0025	SAS	STU	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG04184	hp1	a0001	c0001	t0003	g0029	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG04184	hp2	a0001	c0003	t0002	g0046	SAS	BEB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG04204	hp1	a0001	c0003	t0002	g0006	SAS	STU	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG04228	hp1	a0001	c0006	t0037	g0080	SAS	STU	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18612	hp1	a0002	c0002	t0003	g0005	EAS	CHB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18747	hp1	a0001	c0001	t0005	g0001	EAS	CHB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18906	hp1	a0001	c0001	t0011	g0063	AFR	YRI	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18906	hp2	a0001	c0001	t0004	g0018	AFR	YRI	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18939	hp1	a0001	c0003	t0002	g0011	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18939	hp2	a0001	c0001	t0013	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18940	hp1	a0001	c0001	t0007	g0013	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18941	hp1	a0002	c0002	t0024	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18942	hp1	a0001	c0001	t0007	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18942	hp2	a0001	c0001	t0007	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18944	hp1	a0001	c0001	t0007	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18945	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18946	hp1	a0001	c0003	t0015	g0009	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18947	hp1	a0001	c0001	t0001	g0008	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18947	hp2	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18948	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18949	hp1	a0001	c0001	t0001	g0008	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18949	hp2	a0001	c0001	t0001	g0076	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18950	hp1	a0001	c0003	t0002	g0009	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18950	hp2	a0001	c0001	t0005	g0068	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18951	hp1	a0002	c0002	t0046	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18951	hp2	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18952	hp1	a0001	c0003	t0002	g0009	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18953	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18956	hp1	a0002	c0002	t0003	g0086	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18956	hp2	a0001	c0001	t0030	g0056	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18960	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18961	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18962	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18964	hp1	a0003	c0009	t0017	g0034	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18964	hp2	a0002	c0002	t0050	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18965	hp1	a0001	c0003	t0002	g0009	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18966	hp1	a0001	c0003	t0002	g0016	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18967	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18968	hp1	a0001	c0001	t0001	g0023	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18968	hp2	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18969	hp1	a0001	c0003	t0015	g0009	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18969	hp2	a0001	c0001	t0006	g0010	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18970	hp1	a0002	c0002	t0024	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18971	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18972	hp1	a0002	c0002	t0003	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18972	hp2	a0001	c0001	t0001	g0025	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18973	hp1	a0002	c0002	t0003	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18973	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18974	hp1	a0001	c0001	t0025	g0094	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18977	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18978	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18978	hp2	a0002	c0002	t0003	g0085	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18980	hp1	a0001	c0001	t0002	g0012	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18980	hp2	a0001	c0001	t0001	g0060	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18981	hp1	a0001	c0001	t0001	g0087	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18981	hp2	a0001	c0001	t0016	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18983	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18984	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18986	hp1	a0002	c0002	t0003	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18989	hp1	a0002	c0002	t0003	g0028	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18990	hp1	a0001	c0001	t0001	g0008	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18991	hp1	a0001	c0001	t0002	g0061	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18991	hp2	a0001	c0003	t0002	g0011	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18992	hp1	a0001	c0001	t0002	g0008	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18992	hp2	a0001	c0001	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18993	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18993	hp2	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18994	hp1	a0001	c0001	t0001	g0004	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18995	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18997	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18997	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18998	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18998	hp2	a0001	c0001	t0001	g0073	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19000	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19001	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19001	hp2	a0001	c0003	t0034	g0009	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19003	hp1	a0001	c0001	t0001	g0035	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19003	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19004	hp1	a0001	c0014	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19005	hp1	a0001	c0001	t0001	g0004	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19007	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19009	hp1	a0001	c0001	t0009	g0075	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19011	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19011	hp2	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19012	hp1	a0001	c0001	t0045	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19043	hp1	a0001	c0003	t0002	g0007	AFR	LWK	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19055	hp1	a0001	c0001	t0006	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19056	hp1	a0001	c0001	t0002	g0008	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19057	hp1	a0001	c0001	t0001	g0010	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19057	hp2	a0001	c0001	t0001	g0010	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19058	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19060	hp1	a0002	c0002	t0003	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19062	hp1	a0001	c0001	t0031	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19064	hp1	a0001	c0001	t0007	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19064	hp2	a0001	c0001	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19065	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19065	hp2	a0001	c0003	t0017	g0006	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19066	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19067	hp1	a0002	c0002	t0029	g0054	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19068	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19070	hp1	a0001	c0001	t0005	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19072	hp1	a0005	c0013	t0002	g0004	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19076	hp1	a0001	c0001	t0033	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19077	hp1	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19077	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19079	hp1	a0002	c0002	t0003	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19080	hp1	a0001	c0001	t0002	g0048	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19080	hp2	a0002	c0002	t0052	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19082	hp1	a0001	c0001	t0002	g0012	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19083	hp1	a0001	c0001	t0002	g0008	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19084	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19085	hp1	a0001	c0001	t0001	g0062	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19086	hp1	a0002	c0002	t0003	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19087	hp2	a0002	c0002	t0048	g0028	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19088	hp1	a0002	c0002	t0003	g0043	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19090	hp1	a0001	c0001	t0005	g0055	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19090	hp2	a0002	c0002	t0003	g0002	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19091	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19240	hp1	a0001	c0006	t0004	g0014	AFR	YRI	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA19240	hp2	a0001	c0001	t0001	g0069	AFR	YRI	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA20752	hp1	a0001	c0007	t0010	g0064	EUR	TSI	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA20905	hp1	a0001	c0001	t0001	g0003	SAS	GIH	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01123	hp1	a0002	c0002	t0003	g0002	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG01123	hp2	a0001	c0004	t0041	g0038	AMR	CLM	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02109	hp2	a0001	c0004	t0039	g0089	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02486	hp1	a0001	c0004	t0022	g0057	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG02559	hp2	a0001	c0003	t0002	g0007	AFR	ACB	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG03471	hp1	a0001	c0005	t0003	g0019	AFR	MSL	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG06807	hp1	a0001	c0003	t0009	g0015	AFR	USA	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
HG06807	hp2	a0001	c0005	t0023	g0019	AFR	USA	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA18955	hp1	a0002	c0002	t0003	g0005	EAS	JPT	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA20300	hp1	a0001	c0001	t0026	g0059	AFR	USA	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA20300	hp2	a0001	c0001	t0004	g0074	AFR	USA	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA21309	hp1	a0001	c0005	t0008	g0004	AFR	LWK	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
NA21309	hp2	a0001	c0003	t0002	g0015	AFR	LWK	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856
homoSapiens_grch38	hp1	a0001	c0007	t0010	g0017	REF	REF	SLITRK2_chrX_145812829_145834856	SLITRK2	chrX	145812829	145834856

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:145823077	TG TG	T T	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.654delG c.654delG	p.Trp218fs p.Trp218fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1644/8421	654/2538	218/845	INFO_REALIGN_3_PRIME	chrX	145823077
chrX:145823227	GC GC	G G	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.804delC c.804delC	p.Ser269fs p.Ser269fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1794/8421	804/2538	268/845	INFO_REALIGN_3_PRIME	chrX	145823227
chrX:145823304	CA CA	C C	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.881delA c.881delA	p.Asn294fs p.Asn294fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1871/8421	881/2538	294/845	INFO_REALIGN_3_PRIME	chrX	145823304
chrX:145823311	AC AC	A A	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.888delC c.888delC	p.Arg297fs p.Arg297fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1878/8421	888/2538	296/845	INFO_REALIGN_3_PRIME	chrX	145823311
chrX:145823363	CT CT	C C	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.939delT c.939delT	p.Arg314fs p.Arg314fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1929/8421	939/2538	313/845		chrX	145823363
chrX:145823978	TC TC	T T	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.1556delC c.1556delC	p.Pro519fs p.Pro519fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2546/8421	1556/2538	519/845	INFO_REALIGN_3_PRIME	chrX	145823978
chrX:145824011	AC AC	A A	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.1590delC c.1590delC	p.Trp531fs p.Trp531fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2580/8421	1590/2538	530/845	INFO_REALIGN_3_PRIME	chrX	145824011
chrX:145824140	TG TG	T T	1	a0003 a0003	1	NA18964.hp1 NA18964.hp1	frameshift_variant	HIGH	c.1719delG c.1719delG	p.Arg574fs p.Arg574fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2709/8421	1719/2538	573/845	INFO_REALIGN_3_PRIME	chrX	145824140
chrX:145824190	G G	A A	1	a0004 a0004	1	HG03831.hp1 HG03831.hp1	missense_variant	MODERATE	c.1765G>A c.1765G>A	p.Val589Ile p.Val589Ile	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2755/8421	1765/2538	589/845		chrX	145824190
chrX:145824226	T T	C C	1	a0002 a0002	54	HG00408.hp1 HG00621.hp1 HG01123.hp1 others(51): Show HG00408.hp1 HG00621.hp1 HG01123.hp1 HG01192.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01975.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02602.hp1 HG03834.hp1 NA18612.hp1 NA18941.hp1 NA18947.hp2 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18956.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18978.hp2 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19011.hp2 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp2	missense_variant	MODERATE	c.1801T>C c.1801T>C	p.Ser601Pro p.Ser601Pro	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2791/8421	1801/2538	601/845		chrX	145824226
chrX:145824432	T T	TG TG	1	a0005 a0005	1	NA19072.hp1 NA19072.hp1	frameshift_variant	HIGH	c.2010dupG c.2010dupG	p.Ser671fs p.Ser671fs	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3001/8421	2011/2538	671/845	INFO_REALIGN_3_PRIME	chrX	145824432

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:145822734	G G	A A	4	a0001c0003 a0001c0008 a0003c0009 others(1): Show a0001c0003 a0001c0008 a0003c0009 a0004c0010	48	HG00323.hp1 HG00558.hp1 HG00642.hp1 others(45): Show HG00323.hp1 HG00558.hp1 HG00642.hp1 HG01081.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp2 HG01884.hp1 HG02040.hp1 HG02145.hp1 HG02155.hp1 HG02257.hp2 HG02451.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02698.hp1 HG02735.hp1 HG02818.hp1 HG02970.hp1 HG03017.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp2 HG03579.hp1 HG03669.hp1 HG03831.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04204.hp1 HG06807.hp1 NA18939.hp1 NA18946.hp1 NA18950.hp1 NA18952.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18969.hp1 NA18991.hp2 NA19001.hp2 NA19043.hp1 NA19065.hp2 NA21309.hp2	synonymous_variant	LOW	c.309G>A c.309G>A	p.Thr103Thr p.Thr103Thr	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1299/8421	309/2538	103/845	chrX	145822734
chrX:145822914	C C	G G	1	a0001c0006 a0001c0006	5	HG00099.hp1 HG02257.hp1 HG03098.hp1 others(2): Show HG00099.hp1 HG02257.hp1 HG03098.hp1 HG04228.hp1 NA19240.hp1	synonymous_variant	LOW	c.489C>G c.489C>G	p.Leu163Leu p.Leu163Leu	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1479/8421	489/2538	163/845	chrX	145822914
chrX:145823112	C C	T T	1	a0001c0014 a0001c0014	1	NA19004.hp1 NA19004.hp1	synonymous_variant	LOW	c.687C>T c.687C>T	p.Ala229Ala p.Ala229Ala	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1677/8421	687/2538	229/845	chrX	145823112
chrX:145823364	T T	C C	12	a0001c0001 a0001c0003 a0001c0004 others(9): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0011 a0001c0012 a0001c0014 a0002c0002 a0004c0010 a0005c0013	321	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(318): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.939T>C c.939T>C	p.Pro313Pro p.Pro313Pro	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1929/8421	939/2538	313/845	chrX	145823364
chrX:145823427	T T	C C	2	a0001c0004 a0001c0011 a0001c0004 a0001c0011	12	HG01109.hp1 HG01123.hp2 HG02109.hp2 others(9): Show HG01109.hp1 HG01123.hp2 HG02109.hp2 HG02280.hp2 HG02486.hp1 HG02615.hp2 HG02622.hp1 HG02723.hp1 HG02818.hp2 HG02970.hp2 HG03453.hp2 HG03540.hp2	synonymous_variant	LOW	c.1002T>C c.1002T>C	p.Ser334Ser p.Ser334Ser	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1992/8421	1002/2538	334/845	chrX	145823427
chrX:145823892	T T	C C	1	a0001c0012 a0001c0012	1	HG02630.hp2 HG02630.hp2	synonymous_variant	LOW	c.1467T>C c.1467T>C	p.Asn489Asn p.Asn489Asn	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2457/8421	1467/2538	489/845	chrX	145823892
chrX:145823920	C C	T T	3	a0001c0005 a0001c0008 a0002c0002 a0001c0005 a0001c0008 a0002c0002	65	HG00408.hp1 HG00621.hp1 HG00639.hp2 others(62): Show HG00408.hp1 HG00621.hp1 HG00639.hp2 HG01123.hp1 HG01192.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01891.hp1 HG01975.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02602.hp1 HG02895.hp1 HG02970.hp1 HG02976.hp2 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03471.hp1 HG03834.hp1 HG06807.hp2 NA18612.hp1 NA18941.hp1 NA18947.hp2 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18956.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18978.hp2 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19011.hp2 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp2 NA21309.hp1	synonymous_variant	LOW	c.1495C>T c.1495C>T	p.Leu499Leu p.Leu499Leu	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2485/8421	1495/2538	499/845	chrX	145823920
chrX:145824006	G G	A A	1	a0001c0011 a0001c0011	1	HG02615.hp2 HG02615.hp2	synonymous_variant	LOW	c.1581G>A c.1581G>A	p.Gln527Gln p.Gln527Gln	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2571/8421	1581/2538	527/845	chrX	145824006

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:145817850	G G	GC GC	1	a0001c0001t0025 a0001c0001t0025	1	NA18974.hp1 NA18974.hp1	5_prime_UTR_variant	MODIFIER	c.-966dupC c.-966dupC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/5	4572	INFO_REALIGN_3_PRIME	chrX	145817850
chrX:145817898	GC GC	G G	1	a0001c0001t0025 a0001c0001t0025	1	NA18974.hp1 NA18974.hp1	5_prime_UTR_variant	MODIFIER	c.-918delC c.-918delC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/5	4525	INFO_REALIGN_3_PRIME	chrX	145817898
chrX:145817916	G G	C C	1	a0001c0001t0026 a0001c0001t0026	1	NA20300.hp1 NA20300.hp1	5_prime_UTR_variant	MODIFIER	c.-903G>C c.-903G>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/5	4510		chrX	145817916
chrX:145817938	A A	G G	1	a0001c0001t0055 a0001c0001t0055	1	HG03942.hp1 HG03942.hp1	5_prime_UTR_variant	MODIFIER	c.-881A>G c.-881A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/5	4488		chrX	145817938
chrX:145817955	G G	A A	2	a0001c0001t0014 a0001c0001t0027 a0001c0001t0014 a0001c0001t0027	3	HG02896.hp2 HG02922.hp1 HG02976.hp1 HG02896.hp2 HG02922.hp1 HG02976.hp1	5_prime_UTR_variant	MODIFIER	c.-864G>A c.-864G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/5	4471		chrX	145817955
chrX:145817968	C C	T T	1	a0001c0001t0054 a0001c0001t0054	1	HG01978.hp1 HG01978.hp1	5_prime_UTR_variant	MODIFIER	c.-851C>T c.-851C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/5	4458		chrX	145817968
chrX:145821472	C C	A A	1	a0001c0004t0028 a0001c0004t0028	1	HG03453.hp2 HG03453.hp2	5_prime_UTR_variant	MODIFIER	c.-605C>A c.-605C>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/5	954		chrX	145821472
chrX:145821597	C C	T T	1	a0001c0003t0053 a0001c0003t0053	1	HG00642.hp1 HG00642.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-480C>T c.-480C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/5			chrX	145821597
chrX:145821608	G G	GC GC	1	a0002c0002t0029 a0002c0002t0029	1	NA19067.hp1 NA19067.hp1	5_prime_UTR_variant	MODIFIER	c.-467dupC c.-467dupC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/5	815	INFO_REALIGN_3_PRIME	chrX	145821608
chrX:145821642	C C	G G	14	a0001c0001t0003 a0001c0001t0045 a0001c0004t0047 others(11): Show a0001c0001t0003 a0001c0001t0045 a0001c0004t0047 a0001c0005t0003 a0001c0005t0023 a0001c0005t0051 a0002c0002t0003 a0002c0002t0024 a0002c0002t0029 a0002c0002t0046 a0002c0002t0048 a0002c0002t0049 a0002c0002t0050 a0002c0002t0052	64	HG00408.hp1 HG00621.hp1 HG01123.hp1 others(61): Show HG00408.hp1 HG00621.hp1 HG01123.hp1 HG01192.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01891.hp1 HG01975.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02895.hp1 HG02896.hp1 HG02976.hp2 HG03195.hp1 HG03209.hp1 HG03471.hp1 HG03540.hp2 HG03834.hp1 HG04184.hp1 HG06807.hp2 NA18612.hp1 NA18941.hp1 NA18947.hp2 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18956.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18978.hp2 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19011.hp2 NA19012.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp2	5_prime_UTR_variant	MODIFIER	c.-435C>G c.-435C>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/5	784		chrX	145821642
chrX:145821738	G G	A A	1	a0001c0001t0030 a0001c0001t0030	1	NA18956.hp2 NA18956.hp2	5_prime_UTR_variant	MODIFIER	c.-339G>A c.-339G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/5	688		chrX	145821738
chrX:145821792	G G	C C	1	a0001c0001t0005 a0001c0001t0005	6	NA18747.hp1 NA18945.hp1 NA18950.hp2 others(3): Show NA18747.hp1 NA18945.hp1 NA18950.hp2 NA19011.hp1 NA19070.hp1 NA19090.hp1	5_prime_UTR_variant	MODIFIER	c.-285G>C c.-285G>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/5	634		chrX	145821792
chrX:145822383	G G	GT GT	1	a0002c0002t0029 a0002c0002t0029	1	NA19067.hp1 NA19067.hp1	5_prime_UTR_variant	MODIFIER	c.-40dupT c.-40dupT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	39	INFO_REALIGN_3_PRIME	chrX	145822383
chrX:145822411	C C	T T	1	a0001c0006t0044 a0001c0006t0044	1	HG02257.hp1 HG02257.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-15C>T c.-15C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5			chrX	145822411
chrX:145825007	C C	T T	2	a0001c0001t0043 a0002c0002t0052 a0001c0001t0043 a0002c0002t0052	2	HG02293.hp2 NA19080.hp2 HG02293.hp2 NA19080.hp2	3_prime_UTR_variant	MODIFIER	c.44C>T c.44C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	44		chrX	145825007
chrX:145825169	C C	CT CT	19	a0001c0001t0003 a0001c0001t0008 a0001c0001t0040 others(16): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0040 a0001c0004t0019 a0001c0004t0020 a0001c0004t0041 a0001c0004t0047 a0001c0005t0003 a0001c0005t0008 a0001c0005t0051 a0001c0008t0021 a0002c0002t0003 a0002c0002t0021 a0002c0002t0024 a0002c0002t0029 a0002c0002t0048 a0002c0002t0049 a0002c0002t0050 a0002c0002t0052	74	HG00408.hp1 HG00621.hp1 HG00639.hp2 others(71): Show HG00408.hp1 HG00621.hp1 HG00639.hp2 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01192.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01891.hp1 HG01975.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02280.hp2 HG02602.hp1 HG02622.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02896.hp1 HG02922.hp2 HG02976.hp2 HG03041.hp2 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03471.hp1 HG03516.hp2 HG03540.hp2 HG03834.hp1 HG04184.hp1 NA18612.hp1 NA18941.hp1 NA18947.hp2 NA18951.hp2 NA18955.hp1 NA18956.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18978.hp2 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19011.hp2 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.228dupT c.228dupT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	229	INFO_REALIGN_3_PRIME	chrX	145825169
chrX:145825169	C C	CTT CTT	3	a0001c0004t0022 a0001c0004t0028 a0001c0008t0042 a0001c0004t0022 a0001c0004t0028 a0001c0008t0042	4	HG02486.hp1 HG02723.hp1 HG02970.hp1 others(1): Show HG02486.hp1 HG02723.hp1 HG02970.hp1 HG03453.hp2	3_prime_UTR_variant	MODIFIER	c.227_228dupTT c.227_228dupTT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	229	INFO_REALIGN_3_PRIME	chrX	145825169
chrX:145825169	CT CT	C C	1	a0001c0004t0039 a0001c0004t0039	1	HG02109.hp2 HG02109.hp2	3_prime_UTR_variant	MODIFIER	c.228delT c.228delT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	228	INFO_REALIGN_3_PRIME	chrX	145825169
chrX:145825169	CTT CTT	C C	5	a0001c0001t0009 a0001c0001t0030 a0001c0001t0038 others(2): Show a0001c0001t0009 a0001c0001t0030 a0001c0001t0038 a0001c0003t0009 a0001c0006t0037	7	HG02145.hp1 HG02809.hp2 HG02818.hp1 others(4): Show HG02145.hp1 HG02809.hp2 HG02818.hp1 HG04228.hp1 HG06807.hp1 NA18956.hp2 NA19009.hp1	3_prime_UTR_variant	MODIFIER	c.227_228delTT c.227_228delTT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	227	INFO_REALIGN_3_PRIME	chrX	145825169
chrX:145825169	CTTT CTTT	C C	30	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(27): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0025 a0001c0001t0026 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0035 a0001c0001t0043 a0001c0001t0045 a0001c0001t0054 a0001c0001t0055 a0001c0003t0002 a0001c0003t0017 a0001c0003t0034 a0001c0003t0036 a0001c0003t0053 a0001c0006t0004 a0001c0006t0044 a0001c0014t0001 a0003c0009t0017 a0004c0010t0002 a0005c0013t0002	218	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(215): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01255.hp1 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02886.hp1 HG02896.hp2 HG02965.hp1 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 NA18522.hp1 NA18747.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18953.hp1 NA18959.hp1 NA18962.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18972.hp2 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp2 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19011.hp1 NA19012.hp1 NA19043.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19070.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19080.hp1 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19087.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.226_228delTTT c.226_228delTTT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	226	INFO_REALIGN_3_PRIME	chrX	145825169
chrX:145825169	CTTTT CTTTT	C C	3	a0001c0001t0006 a0001c0001t0027 a0001c0003t0015 a0001c0001t0006 a0001c0001t0027 a0001c0003t0015	9	HG01167.hp1 HG01168.hp2 HG01257.hp2 others(6): Show HG01167.hp1 HG01168.hp2 HG01257.hp2 HG01943.hp1 HG02922.hp1 NA18946.hp1 NA18969.hp1 NA18969.hp2 NA19055.hp1	3_prime_UTR_variant	MODIFIER	c.225_228delTTTT c.225_228delTTTT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	225	INFO_REALIGN_3_PRIME	chrX	145825169
chrX:145825420	A A	C C	1	a0001c0003t0036 a0001c0003t0036	1	HG01081.hp2 HG01081.hp2	3_prime_UTR_variant	MODIFIER	c.457A>C c.457A>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	457		chrX	145825420
chrX:145825876	A A	G G	65	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(62): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0035 a0001c0001t0038 a0001c0001t0040 a0001c0001t0043 a0001c0001t0045 a0001c0001t0054 a0001c0001t0055 a0001c0003t0002 a0001c0003t0009 a0001c0003t0015 a0001c0003t0017 a0001c0003t0034 a0001c0003t0036 a0001c0003t0053 a0001c0004t0018 a0001c0004t0019 a0001c0004t0020 a0001c0004t0022 a0001c0004t0028 a0001c0004t0039 a0001c0004t0041 a0001c0004t0047 a0001c0005t0003 a0001c0005t0008 a0001c0005t0023 a0001c0005t0051 a0001c0006t0004 a0001c0006t0037 a0001c0006t0044 a0001c0008t0021 a0001c0008t0042 a0001c0011t0018 a0001c0014t0001 a0002c0002t0003 a0002c0002t0021 a0002c0002t0024 a0002c0002t0029 a0002c0002t0046 a0002c0002t0048 a0002c0002t0049 a0002c0002t0050 a0002c0002t0052 a0003c0009t0017 a0004c0010t0002 a0005c0013t0002	318	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(315): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.913A>G c.913A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	913		chrX	145825876
chrX:145825977	A A	G G	1	a0001c0001t0013 a0001c0001t0013	3	HG00544.hp1 HG02155.hp2 NA18939.hp2 HG00544.hp1 HG02155.hp2 NA18939.hp2	3_prime_UTR_variant	MODIFIER	c.1014A>G c.1014A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1014		chrX	145825977
chrX:145826696	C C	T T	1	a0001c0004t0039 a0001c0004t0039	1	HG02109.hp2 HG02109.hp2	3_prime_UTR_variant	MODIFIER	c.1733C>T c.1733C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1733		chrX	145826696
chrX:145826736	A A	G G	1	a0001c0001t0035 a0001c0001t0035	1	HG01516.hp1 HG01516.hp1	3_prime_UTR_variant	MODIFIER	c.1773A>G c.1773A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	1773		chrX	145826736
chrX:145826970	C C	T T	1	a0002c0002t0046 a0002c0002t0046	1	NA18951.hp1 NA18951.hp1	3_prime_UTR_variant	MODIFIER	c.2007C>T c.2007C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2007		chrX	145826970
chrX:145826995	A A	G G	17	a0001c0001t0003 a0001c0001t0008 a0001c0005t0003 others(14): Show a0001c0001t0003 a0001c0001t0008 a0001c0005t0003 a0001c0005t0008 a0001c0005t0023 a0001c0005t0051 a0001c0008t0021 a0001c0008t0042 a0002c0002t0003 a0002c0002t0021 a0002c0002t0024 a0002c0002t0029 a0002c0002t0046 a0002c0002t0048 a0002c0002t0049 a0002c0002t0050 a0002c0002t0052	71	HG00408.hp1 HG00621.hp1 HG00639.hp2 others(68): Show HG00408.hp1 HG00621.hp1 HG00639.hp2 HG01123.hp1 HG01192.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01891.hp1 HG01975.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02602.hp1 HG02809.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG02976.hp2 HG03041.hp2 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03471.hp1 HG03516.hp2 HG03834.hp1 HG04184.hp1 HG06807.hp2 NA18612.hp1 NA18941.hp1 NA18947.hp2 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18956.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18978.hp2 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19011.hp2 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.2032A>G c.2032A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2032		chrX	145826995
chrX:145827013	T T	A A	1	a0001c0001t0031 a0001c0001t0031	1	NA19062.hp1 NA19062.hp1	3_prime_UTR_variant	MODIFIER	c.2050T>A c.2050T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2050		chrX	145827013
chrX:145827182	C C	T T	1	a0002c0002t0024 a0002c0002t0024	2	NA18941.hp1 NA18970.hp1 NA18941.hp1 NA18970.hp1	3_prime_UTR_variant	MODIFIER	c.2219C>T c.2219C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2219		chrX	145827182
chrX:145827588	G G	A A	4	a0001c0001t0004 a0001c0004t0047 a0001c0006t0004 others(1): Show a0001c0001t0004 a0001c0004t0047 a0001c0006t0004 a0001c0006t0037	10	HG00099.hp1 HG01934.hp1 HG02258.hp1 others(7): Show HG00099.hp1 HG01934.hp1 HG02258.hp1 HG02451.hp2 HG03098.hp1 HG03540.hp2 HG04228.hp1 NA18906.hp2 NA19240.hp1 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.2625G>A c.2625G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2625		chrX	145827588
chrX:145827783	T T	G G	14	a0001c0001t0003 a0001c0005t0003 a0001c0005t0023 others(11): Show a0001c0001t0003 a0001c0005t0003 a0001c0005t0023 a0001c0008t0021 a0001c0008t0042 a0002c0002t0003 a0002c0002t0021 a0002c0002t0024 a0002c0002t0029 a0002c0002t0046 a0002c0002t0048 a0002c0002t0049 a0002c0002t0050 a0002c0002t0052	64	HG00408.hp1 HG00621.hp1 HG01123.hp1 others(61): Show HG00408.hp1 HG00621.hp1 HG01123.hp1 HG01192.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01891.hp1 HG01975.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02602.hp1 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG02976.hp2 HG03130.hp1 HG03195.hp1 HG03471.hp1 HG03834.hp1 HG04184.hp1 HG06807.hp2 NA18612.hp1 NA18941.hp1 NA18947.hp2 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18956.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18978.hp2 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19011.hp2 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.2820T>G c.2820T>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2820		chrX	145827783
chrX:145827798	T T	A A	1	a0001c0001t0032 a0001c0001t0032	1	HG03688.hp1 HG03688.hp1	3_prime_UTR_variant	MODIFIER	c.2835T>A c.2835T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2835		chrX	145827798
chrX:145827874	G G	A A	1	a0001c0004t0047 a0001c0004t0047	1	HG03540.hp2 HG03540.hp2	3_prime_UTR_variant	MODIFIER	c.2911G>A c.2911G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	2911		chrX	145827874
chrX:145828261	A A	T T	1	a0001c0001t0030 a0001c0001t0030	1	NA18956.hp2 NA18956.hp2	3_prime_UTR_variant	MODIFIER	c.3298A>T c.3298A>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3298		chrX	145828261
chrX:145828595	C C	G G	4	a0001c0004t0018 a0001c0004t0020 a0001c0004t0041 others(1): Show a0001c0004t0018 a0001c0004t0020 a0001c0004t0041 a0001c0011t0018	5	HG01123.hp2 HG02615.hp2 HG02622.hp1 others(2): Show HG01123.hp2 HG02615.hp2 HG02622.hp1 HG02818.hp2 HG02970.hp2	3_prime_UTR_variant	MODIFIER	c.3632C>G c.3632C>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3632		chrX	145828595
chrX:145828599	C C	T T	2	a0001c0003t0017 a0003c0009t0017 a0001c0003t0017 a0003c0009t0017	2	NA18964.hp1 NA19065.hp2 NA18964.hp1 NA19065.hp2	3_prime_UTR_variant	MODIFIER	c.3636C>T c.3636C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3636		chrX	145828599
chrX:145828624	G G	A A	20	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(17): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0025 a0001c0001t0027 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0035 a0001c0001t0038 a0001c0001t0040 a0001c0001t0043 a0001c0001t0045 a0001c0001t0054 a0001c0001t0055 a0001c0014t0001	154	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(151): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00609.hp1 HG00639.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02055.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02280.hp1 HG02293.hp1 HG02293.hp2 HG02559.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp1 HG03139.hp1 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03927.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 NA18522.hp1 NA18747.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18959.hp1 NA18968.hp1 NA18969.hp2 NA18972.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18980.hp2 NA18981.hp1 NA18982.hp1 NA18990.hp1 NA18992.hp2 NA18994.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19011.hp1 NA19012.hp1 NA19055.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19070.hp1 NA19076.hp1 NA19077.hp2 NA19084.hp2 NA19085.hp1 NA19087.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp2 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.3661G>A c.3661G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3661		chrX	145828624
chrX:145828629	G G	C C	1	a0002c0002t0048 a0002c0002t0048	1	NA19087.hp2 NA19087.hp2	3_prime_UTR_variant	MODIFIER	c.3666G>C c.3666G>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3666		chrX	145828629
chrX:145828800	TA TA	T T	1	a0001c0001t0033 a0001c0001t0033	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.3842delA c.3842delA	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3842	INFO_REALIGN_3_PRIME	chrX	145828800
chrX:145828807	G G	GA GA	2	a0001c0001t0007 a0002c0002t0049 a0001c0001t0007 a0002c0002t0049	7	HG00408.hp2 HG02148.hp2 NA18940.hp1 others(4): Show HG00408.hp2 HG02148.hp2 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA19064.hp1	3_prime_UTR_variant	MODIFIER	c.3852dupA c.3852dupA	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	3853	INFO_REALIGN_3_PRIME	chrX	145828807
chrX:145829012	T T	C C	1	a0001c0001t0016 a0001c0001t0016	2	HG02027.hp1 NA18981.hp2 HG02027.hp1 NA18981.hp2	3_prime_UTR_variant	MODIFIER	c.4049T>C c.4049T>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4049		chrX	145829012
chrX:145829211	A A	G G	1	a0002c0002t0029 a0002c0002t0029	1	NA19067.hp1 NA19067.hp1	3_prime_UTR_variant	MODIFIER	c.4248A>G c.4248A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4248		chrX	145829211
chrX:145829289	A A	G G	1	a0001c0003t0034 a0001c0003t0034	1	NA19001.hp2 NA19001.hp2	3_prime_UTR_variant	MODIFIER	c.4326A>G c.4326A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4326		chrX	145829289
chrX:145829293	T T	A A	1	a0001c0001t0030 a0001c0001t0030	1	NA18956.hp2 NA18956.hp2	3_prime_UTR_variant	MODIFIER	c.4330T>A c.4330T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4330		chrX	145829293
chrX:145829407	C C	A A	1	a0001c0001t0012 a0001c0001t0012	3	HG00323.hp2 HG00735.hp1 HG01106.hp1 HG00323.hp2 HG00735.hp1 HG01106.hp1	3_prime_UTR_variant	MODIFIER	c.4444C>A c.4444C>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4444		chrX	145829407
chrX:145829418	C C	T T	67	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(64): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0035 a0001c0001t0038 a0001c0001t0040 a0001c0001t0043 a0001c0001t0045 a0001c0001t0054 a0001c0001t0055 a0001c0003t0002 a0001c0003t0009 a0001c0003t0015 a0001c0003t0017 a0001c0003t0034 a0001c0003t0036 a0001c0003t0053 a0001c0004t0018 a0001c0004t0019 a0001c0004t0020 a0001c0004t0022 a0001c0004t0028 a0001c0004t0039 a0001c0004t0041 a0001c0004t0047 a0001c0005t0003 a0001c0005t0008 a0001c0005t0023 a0001c0005t0051 a0001c0006t0004 a0001c0006t0037 a0001c0006t0044 a0001c0008t0021 a0001c0008t0042 a0001c0011t0018 a0001c0012t0011 a0001c0014t0001 a0002c0002t0003 a0002c0002t0021 a0002c0002t0024 a0002c0002t0029 a0002c0002t0046 a0002c0002t0048 a0002c0002t0049 a0002c0002t0050 a0002c0002t0052 a0003c0009t0017 a0004c0010t0002 a0005c0013t0002	322	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(319): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.4455C>T c.4455C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4455		chrX	145829418
chrX:145829426	T T	C C	1	a0001c0001t0030 a0001c0001t0030	1	NA18956.hp2 NA18956.hp2	3_prime_UTR_variant	MODIFIER	c.4463T>C c.4463T>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4463		chrX	145829426
chrX:145829450	C C	T T	1	a0001c0004t0041 a0001c0004t0041	1	HG01123.hp2 HG01123.hp2	3_prime_UTR_variant	MODIFIER	c.4487C>T c.4487C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4487		chrX	145829450
chrX:145829826	C C	G G	1	a0002c0002t0050 a0002c0002t0050	1	NA18964.hp2 NA18964.hp2	3_prime_UTR_variant	MODIFIER	c.4863C>G c.4863C>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	5/5	4863		chrX	145829826

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:145818153	G G	A A	1	a0001c0001t0003g0029 a0001c0001t0003g0029	1	HG04184.hp1 HG04184.hp1	intron_variant	MODIFIER	c.-793+127G>A c.-793+127G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145818153
chrX:145818255	C C	A A	1	a0001c0003t0053g0030 a0001c0003t0053g0030	1	HG00642.hp1 HG00642.hp1	intron_variant	MODIFIER	c.-793+229C>A c.-793+229C>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145818255
chrX:145818275	G G	C C	1	a0001c0003t0002g0031 a0001c0003t0002g0031	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.-793+249G>C c.-793+249G>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145818275
chrX:145818293	C C	CCA CCA	1	a0001c0001t0025g0094 a0001c0001t0025g0094	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-793+267_-793+268i others(4): Show c.-793+267_-793+268insCA	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145818293
chrX:145818294	A A	C C	1	a0001c0001t0025g0094 a0001c0001t0025g0094	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-793+268A>C c.-793+268A>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145818294
chrX:145818536	G G	C C	2	a0001c0001t0001g0032 a0001c0003t0002g0033 a0001c0001t0001g0032 a0001c0003t0002g0033	2	HG01891.hp2 HG03486.hp1 HG01891.hp2 HG03486.hp1	intron_variant	MODIFIER	c.-793+510G>C c.-793+510G>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145818536
chrX:145818600	A A	C C	1	a0001c0001t0008g0093 a0001c0001t0008g0093	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-793+574A>C c.-793+574A>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145818600
chrX:145818821	T T	TG TG	1	a0001c0001t0025g0094 a0001c0001t0025g0094	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-793+799dupG c.-793+799dupG	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	145818821
chrX:145819049	C C	CAGTTAG CAGTTAG	1	a0003c0009t0017g0034 a0003c0009t0017g0034	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.-793+1025_-793+103 others(10): Show c.-793+1025_-793+1030dupGTTAGA	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	145819049
chrX:145819247	T T	A A	4	a0001c0003t0002g0009 a0001c0003t0002g0011 a0001c0003t0015g0009 others(1): Show a0001c0003t0002g0009 a0001c0003t0002g0011 a0001c0003t0015g0009 a0001c0003t0034g0009	10	HG02040.hp1 HG02155.hp1 NA18939.hp1 others(7): Show HG02040.hp1 HG02155.hp1 NA18939.hp1 NA18946.hp1 NA18950.hp1 NA18952.hp1 NA18965.hp1 NA18969.hp1 NA18991.hp2 NA19001.hp2	intron_variant	MODIFIER	c.-793+1221T>A c.-793+1221T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145819247
chrX:145819268	A A	AT AT	2	a0001c0003t0002g0033 a0001c0005t0051g0092 a0001c0003t0002g0033 a0001c0005t0051g0092	2	HG03209.hp1 HG03486.hp1 HG03209.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-792-1197dupT c.-792-1197dupT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	145819268
chrX:145819268	AT AT	A A	9	a0001c0001t0001g0020 a0001c0001t0001g0035 a0001c0004t0018g0037 others(6): Show a0001c0001t0001g0020 a0001c0001t0001g0035 a0001c0004t0018g0037 a0001c0004t0020g0039 a0001c0004t0020g0040 a0001c0004t0041g0038 a0001c0004t0047g0041 a0001c0005t0003g0042 a0001c0011t0018g0036	10	HG00738.hp1 HG00741.hp1 HG01123.hp2 others(7): Show HG00738.hp1 HG00741.hp1 HG01123.hp2 HG02615.hp2 HG02622.hp1 HG02818.hp2 HG02970.hp2 HG03195.hp1 HG03540.hp2 NA19003.hp1	intron_variant	MODIFIER	c.-792-1197delT c.-792-1197delT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	145819268
chrX:145819505	C C	A A	1	a0002c0002t0003g0043 a0002c0002t0003g0043	1	NA19088.hp1 NA19088.hp1	intron_variant	MODIFIER	c.-792-969C>A c.-792-969C>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145819505
chrX:145819661	T T	G G	3	a0001c0006t0004g0021 a0001c0006t0004g0044 a0001c0006t0044g0021 a0001c0006t0004g0021 a0001c0006t0004g0044 a0001c0006t0044g0021	3	HG00099.hp1 HG02257.hp1 HG03098.hp1 HG00099.hp1 HG02257.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-792-813T>G c.-792-813T>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145819661
chrX:145819737	C C	G G	2	a0001c0005t0003g0019 a0001c0005t0023g0019 a0001c0005t0003g0019 a0001c0005t0023g0019	3	HG02895.hp1 HG03471.hp1 HG06807.hp2 HG02895.hp1 HG03471.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-792-737C>G c.-792-737C>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145819737
chrX:145819882	G G	A A	28	a0001c0001t0001g0035 a0001c0001t0002g0016 a0001c0001t0002g0048 others(25): Show a0001c0001t0001g0035 a0001c0001t0002g0016 a0001c0001t0002g0048 a0001c0003t0002g0006 a0001c0003t0002g0007 a0001c0003t0002g0009 a0001c0003t0002g0011 a0001c0003t0002g0015 a0001c0003t0002g0016 a0001c0003t0002g0022 a0001c0003t0002g0031 a0001c0003t0002g0045 a0001c0003t0002g0046 a0001c0003t0002g0047 a0001c0003t0002g0049 a0001c0003t0002g0050 a0001c0003t0002g0052 a0001c0003t0009g0006 a0001c0003t0009g0015 a0001c0003t0015g0009 a0001c0003t0017g0006 a0001c0003t0034g0009 a0001c0003t0036g0022 a0001c0003t0053g0030 a0001c0008t0021g0016 a0001c0008t0042g0006 a0003c0009t0017g0034 a0004c0010t0002g0051	49	HG00558.hp1 HG00642.hp1 HG01081.hp2 others(46): Show HG00558.hp1 HG00642.hp1 HG01081.hp2 HG01168.hp1 HG01175.hp1 HG01346.hp1 HG01361.hp2 HG01884.hp1 HG02040.hp1 HG02145.hp1 HG02155.hp1 HG02257.hp2 HG02451.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02698.hp1 HG02735.hp1 HG02818.hp1 HG02970.hp1 HG03017.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03490.hp1 HG03491.hp2 HG03579.hp1 HG03669.hp1 HG03831.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04204.hp1 HG06807.hp1 NA18939.hp1 NA18946.hp1 NA18950.hp1 NA18952.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18969.hp1 NA18991.hp2 NA19001.hp2 NA19003.hp1 NA19043.hp1 NA19065.hp2 NA19080.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-792-592G>A c.-792-592G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145819882
chrX:145819889	A A	G G	1	a0001c0001t0016g0091 a0001c0001t0016g0091	1	HG02027.hp1 HG02027.hp1	intron_variant	MODIFIER	c.-792-585A>G c.-792-585A>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145819889
chrX:145820078	TG TG	T T	1	a0001c0001t0011g0090 a0001c0001t0011g0090	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.-792-394delG c.-792-394delG	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	145820078
chrX:145820106	T T	A A	7	a0001c0001t0008g0053 a0001c0001t0008g0093 a0001c0004t0018g0037 others(4): Show a0001c0001t0008g0053 a0001c0001t0008g0093 a0001c0004t0018g0037 a0001c0004t0020g0039 a0001c0004t0020g0040 a0001c0004t0041g0038 a0001c0011t0018g0036	7	HG01123.hp2 HG02615.hp2 HG02622.hp1 others(4): Show HG01123.hp2 HG02615.hp2 HG02622.hp1 HG02818.hp2 HG02886.hp2 HG02970.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-792-368T>A c.-792-368T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145820106
chrX:145820203	T T	TC TC	1	a0002c0002t0029g0054 a0002c0002t0029g0054	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-792-268dupC c.-792-268dupC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	145820203
chrX:145820206	C C	T T	5	a0001c0004t0018g0037 a0001c0004t0020g0039 a0001c0004t0020g0040 others(2): Show a0001c0004t0018g0037 a0001c0004t0020g0039 a0001c0004t0020g0040 a0001c0004t0041g0038 a0001c0011t0018g0036	5	HG01123.hp2 HG02615.hp2 HG02622.hp1 others(2): Show HG01123.hp2 HG02615.hp2 HG02622.hp1 HG02818.hp2 HG02970.hp2	intron_variant	MODIFIER	c.-792-268C>T c.-792-268C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145820206
chrX:145820309	A A	AG AG	1	a0002c0002t0029g0054 a0002c0002t0029g0054	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-792-164dupG c.-792-164dupG	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	145820309
chrX:145820461	C C	T T	1	a0001c0004t0039g0089 a0001c0004t0039g0089	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.-792-13C>T c.-792-13C>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	1/4		chrX	145820461
chrX:145820694	CAG CAG	C C	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-730+159_-730+160d others(4): Show c.-730+159_-730+160delAG	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145820694
chrX:145820763	C C	CT CT	1	a0002c0002t0029g0054 a0002c0002t0029g0054	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-730+227_-730+228i others(3): Show c.-730+227_-730+228insT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145820763
chrX:145820922	C C	G G	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	NA18981.hp1 NA18981.hp1	intron_variant	MODIFIER	c.-730+386C>G c.-730+386C>G	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145820922
chrX:145820948	G G	A A	1	a0001c0001t0005g0055 a0001c0001t0005g0055	1	NA19090.hp1 NA19090.hp1	intron_variant	MODIFIER	c.-729-400G>A c.-729-400G>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145820948
chrX:145821071	C C	CCA CCA	14	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0062 others(11): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0062 a0001c0001t0002g0012 a0001c0001t0002g0061 a0001c0001t0007g0013 a0001c0001t0011g0063 a0001c0001t0012g0012 a0001c0001t0025g0094 a0001c0001t0035g0013 a0001c0001t0040g0013 a0001c0007t0010g0064 a0001c0012t0011g0058 a0003c0009t0017g0034	15	HG00323.hp2 HG01081.hp1 HG01516.hp1 others(12): Show HG00323.hp2 HG01081.hp1 HG01516.hp1 HG02630.hp2 HG02922.hp2 HG03927.hp1 NA18906.hp1 NA18940.hp1 NA18964.hp1 NA18974.hp1 NA18980.hp1 NA18991.hp1 NA19082.hp1 NA19085.hp1 NA20752.hp1	intron_variant	MODIFIER	c.-729-247_-729-246d others(4): Show c.-729-247_-729-246dupAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	C C	CCACA CCACA	4	a0001c0001t0001g0023 a0001c0003t0002g0015 a0001c0003t0002g0045 others(1): Show a0001c0001t0001g0023 a0001c0003t0002g0015 a0001c0003t0002g0045 a0001c0003t0009g0015	6	HG00099.hp2 HG01884.hp1 HG02145.hp1 others(3): Show HG00099.hp2 HG01884.hp1 HG02145.hp1 HG06807.hp1 NA18968.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-729-249_-729-246d others(6): Show c.-729-249_-729-246dupACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	C C	CCACACA CCACACA	3	a0001c0004t0020g0039 a0001c0004t0020g0040 a0001c0004t0039g0089 a0001c0004t0020g0039 a0001c0004t0020g0040 a0001c0004t0039g0089	3	HG02109.hp2 HG02622.hp1 HG02818.hp2 HG02109.hp2 HG02622.hp1 HG02818.hp2	intron_variant	MODIFIER	c.-729-251_-729-246d others(8): Show c.-729-251_-729-246dupACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	C C	CCACACAC others(1): Show CCACACACA	2	a0001c0004t0018g0037 a0001c0004t0041g0038 a0001c0004t0018g0037 a0001c0004t0041g0038	2	HG01123.hp2 HG02970.hp2 HG01123.hp2 HG02970.hp2	intron_variant	MODIFIER	c.-729-253_-729-246d others(10): Show c.-729-253_-729-246dupACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	C C	CCACACAC others(3): Show CCACACACACA	2	a0001c0001t0008g0053 a0001c0001t0008g0093 a0001c0001t0008g0053 a0001c0001t0008g0093	2	HG02886.hp2 HG03041.hp2 HG02886.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-729-255_-729-246d others(12): Show c.-729-255_-729-246dupACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	C C	CCACACAC others(9): Show CCACACACACACACACA	1	a0001c0001t0030g0056 a0001c0001t0030g0056	1	NA18956.hp2 NA18956.hp2	intron_variant	MODIFIER	c.-729-261_-729-246d others(18): Show c.-729-261_-729-246dupACACACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	CCA CCA	C C	9	a0001c0001t0003g0029 a0002c0002t0003g0005 a0002c0002t0003g0028 others(6): Show a0001c0001t0003g0029 a0002c0002t0003g0005 a0002c0002t0003g0028 a0002c0002t0003g0081 a0002c0002t0003g0086 a0002c0002t0021g0005 a0002c0002t0024g0005 a0002c0002t0048g0028 a0002c0002t0050g0005	15	HG01433.hp1 HG02071.hp1 HG02602.hp1 others(12): Show HG01433.hp1 HG02071.hp1 HG02602.hp1 HG04184.hp1 NA18612.hp1 NA18941.hp1 NA18956.hp1 NA18964.hp2 NA18970.hp1 NA18973.hp1 NA18989.hp1 NA19060.hp1 NA19079.hp1 NA19086.hp1 NA19087.hp2	intron_variant	MODIFIER	c.-729-247_-729-246d others(4): Show c.-729-247_-729-246delAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	CCACA CCACA	C C	3	a0001c0001t0001g0027 a0001c0001t0045g0002 a0002c0002t0003g0002 a0001c0001t0001g0027 a0001c0001t0045g0002 a0002c0002t0003g0002	20	HG01123.hp1 HG01192.hp1 HG01257.hp1 others(17): Show HG01123.hp1 HG01192.hp1 HG01257.hp1 HG03540.hp1 HG03834.hp1 NA18947.hp2 NA18951.hp2 NA18968.hp2 NA18971.hp1 NA18984.hp1 NA18993.hp2 NA18995.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19012.hp1 NA19066.hp1 NA19068.hp1 NA19077.hp1 NA19090.hp2	intron_variant	MODIFIER	c.-729-249_-729-246d others(6): Show c.-729-249_-729-246delACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821071	CCACACA CCACACA	C C	4	a0001c0005t0003g0019 a0001c0005t0003g0042 a0001c0005t0023g0019 others(1): Show a0001c0005t0003g0019 a0001c0005t0003g0042 a0001c0005t0023g0019 a0002c0002t0003g0085	4	HG03195.hp1 HG03471.hp1 HG06807.hp2 others(1): Show HG03195.hp1 HG03471.hp1 HG06807.hp2 NA18978.hp2	intron_variant	MODIFIER	c.-729-251_-729-246d others(8): Show c.-729-251_-729-246delACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821071
chrX:145821095	A A	C C	1	a0002c0002t0029g0054 a0002c0002t0029g0054	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-729-253A>C c.-729-253A>C	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821095
chrX:145821095	ACACACAC others(1): Show ACACACACT	A A	8	a0001c0001t0003g0005 a0001c0005t0003g0005 a0001c0005t0023g0019 others(5): Show a0001c0001t0003g0005 a0001c0005t0003g0005 a0001c0005t0023g0019 a0002c0002t0003g0002 a0002c0002t0003g0005 a0002c0002t0046g0002 a0002c0002t0049g0002 a0002c0002t0052g0005	21	HG00408.hp1 HG00621.hp1 HG01258.hp1 others(18): Show HG00408.hp1 HG00621.hp1 HG01258.hp1 HG01261.hp1 HG01975.hp2 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02895.hp1 HG02896.hp1 HG02976.hp2 NA18951.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18972.hp1 NA18986.hp1 NA18993.hp1 NA18998.hp1 NA19011.hp2 NA19080.hp2	intron_variant	MODIFIER	c.-729-251_-729-244d others(10): Show c.-729-251_-729-244delACACACTC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821095
chrX:145821097	A A	T T	3	a0002c0002t0003g0084 a0002c0002t0003g0086 a0002c0002t0029g0054 a0002c0002t0003g0084 a0002c0002t0003g0086 a0002c0002t0029g0054	3	HG02080.hp1 NA18956.hp1 NA19067.hp1 HG02080.hp1 NA18956.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-729-251A>T c.-729-251A>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821097
chrX:145821097	ACACACTC others(1): Show ACACACTCT	A A	1	a0002c0002t0003g0043 a0002c0002t0003g0043	1	NA19088.hp1 NA19088.hp1	intron_variant	MODIFIER	c.-729-249_-729-242d others(10): Show c.-729-249_-729-242delACACTCTC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821097
chrX:145821099	A A	T T	21	a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0082 others(18): Show a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0002g0026 a0001c0001t0003g0029 a0001c0001t0014g0014 a0001c0001t0027g0014 a0001c0003t0002g0022 a0001c0003t0002g0052 a0001c0003t0036g0022 a0001c0006t0004g0014 a0002c0002t0003g0005 a0002c0002t0003g0028 a0002c0002t0003g0084 a0002c0002t0003g0086 a0002c0002t0021g0005 a0002c0002t0024g0005 a0002c0002t0029g0054 a0002c0002t0048g0028 a0002c0002t0050g0005	28	HG01071.hp1 HG01081.hp2 HG01346.hp1 others(25): Show HG01071.hp1 HG01081.hp2 HG01346.hp1 HG01433.hp1 HG01884.hp2 HG02080.hp1 HG02132.hp1 HG02602.hp1 HG02622.hp2 HG02630.hp1 HG02896.hp2 HG02922.hp1 HG02976.hp1 HG03669.hp1 HG04184.hp1 NA18612.hp1 NA18941.hp1 NA18956.hp1 NA18964.hp2 NA18970.hp1 NA18973.hp1 NA18989.hp1 NA19060.hp1 NA19067.hp1 NA19079.hp1 NA19086.hp1 NA19087.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-729-249A>T c.-729-249A>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821099
chrX:145821101	A A	AC AC	1	a0001c0003t0002g0047 a0001c0003t0002g0047	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-729-246dupC c.-729-246dupC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821101
chrX:145821101	A A	ACACACAC others(3): Show ACACACACACT	1	a0001c0011t0018g0036 a0001c0011t0018g0036	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.-729-246_-729-245i others(12): Show c.-729-246_-729-245insACACACACTC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821101
chrX:145821101	A A	ACACACAC others(1): Show ACACACACT	1	a0001c0004t0022g0057 a0001c0004t0022g0057	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.-729-246_-729-245i others(10): Show c.-729-246_-729-245insACACACTC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821101
chrX:145821101	A A	ACT ACT	2	a0001c0001t0001g0073 a0001c0001t0004g0074 a0001c0001t0001g0073 a0001c0001t0004g0074	2	NA18998.hp2 NA20300.hp2 NA18998.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-729-227_-729-226d others(4): Show c.-729-227_-729-226dupTC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821101
chrX:145821101	A A	T T	35	a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0076 others(32): Show a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0002g0026 a0001c0001t0002g0078 a0001c0001t0003g0029 a0001c0001t0004g0018 a0001c0001t0004g0079 a0001c0001t0009g0075 a0001c0001t0014g0014 a0001c0001t0027g0014 a0001c0001t0045g0002 a0001c0003t0002g0022 a0001c0003t0002g0033 a0001c0003t0002g0052 a0001c0003t0036g0022 a0001c0004t0047g0041 a0001c0006t0004g0014 a0001c0006t0004g0021 a0001c0006t0037g0080 a0001c0006t0044g0021 a0002c0002t0003g0002 a0002c0002t0003g0005 a0002c0002t0003g0028 a0002c0002t0003g0081 a0002c0002t0003g0084 a0002c0002t0003g0086 a0002c0002t0021g0005 a0002c0002t0024g0005 a0002c0002t0029g0054 a0002c0002t0048g0028 a0002c0002t0050g0005	61	HG00099.hp1 HG01071.hp1 HG01081.hp2 others(58): Show HG00099.hp1 HG01071.hp1 HG01081.hp2 HG01123.hp1 HG01192.hp1 HG01257.hp1 HG01346.hp1 HG01433.hp1 HG01884.hp2 HG01934.hp1 HG02071.hp1 HG02080.hp1 HG02132.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02451.hp2 HG02602.hp1 HG02622.hp2 HG02630.hp1 HG02896.hp2 HG02922.hp1 HG02976.hp1 HG03453.hp1 HG03486.hp1 HG03540.hp2 HG03669.hp1 HG03834.hp1 HG04184.hp1 HG04228.hp1 NA18612.hp1 NA18906.hp2 NA18941.hp1 NA18947.hp2 NA18949.hp2 NA18951.hp2 NA18956.hp1 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18973.hp1 NA18984.hp1 NA18989.hp1 NA18993.hp2 NA18995.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-729-247A>T c.-729-247A>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821101
chrX:145821103	T T	A A	7	a0001c0001t0001g0024 a0001c0001t0001g0060 a0001c0001t0008g0053 others(4): Show a0001c0001t0001g0024 a0001c0001t0001g0060 a0001c0001t0008g0053 a0001c0001t0026g0059 a0001c0001t0054g0024 a0001c0003t0002g0046 a0001c0012t0011g0058	7	HG01346.hp2 HG01978.hp1 HG02630.hp2 others(4): Show HG01346.hp2 HG01978.hp1 HG02630.hp2 HG02886.hp2 HG04184.hp2 NA18980.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-729-245T>A c.-729-245T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821103
chrX:145821115	T T	A A	3	a0001c0001t0008g0093 a0002c0002t0003g0084 a0002c0002t0029g0054 a0001c0001t0008g0093 a0002c0002t0003g0084 a0002c0002t0029g0054	3	HG02080.hp1 HG03041.hp2 NA19067.hp1 HG02080.hp1 HG03041.hp2 NA19067.hp1	intron_variant	MODIFIER	c.-729-233T>A c.-729-233T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821115
chrX:145821117	T T	A A	11	a0001c0001t0003g0029 a0001c0001t0008g0053 a0001c0001t0008g0093 others(8): Show a0001c0001t0003g0029 a0001c0001t0008g0053 a0001c0001t0008g0093 a0001c0011t0018g0036 a0002c0002t0003g0005 a0002c0002t0003g0028 a0002c0002t0003g0086 a0002c0002t0021g0005 a0002c0002t0024g0005 a0002c0002t0048g0028 a0002c0002t0050g0005	17	HG01433.hp1 HG02602.hp1 HG02615.hp2 others(14): Show HG01433.hp1 HG02602.hp1 HG02615.hp2 HG02886.hp2 HG03041.hp2 HG04184.hp1 NA18612.hp1 NA18941.hp1 NA18956.hp1 NA18964.hp2 NA18970.hp1 NA18973.hp1 NA18989.hp1 NA19060.hp1 NA19079.hp1 NA19086.hp1 NA19087.hp2	intron_variant	MODIFIER	c.-729-231T>A c.-729-231T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821117
chrX:145821119	T T	A A	28	a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0082 others(25): Show a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0002g0026 a0001c0001t0008g0053 a0001c0001t0008g0093 a0001c0001t0009g0075 a0001c0001t0014g0014 a0001c0001t0027g0014 a0001c0001t0030g0056 a0001c0001t0045g0002 a0001c0003t0002g0022 a0001c0003t0002g0052 a0001c0003t0036g0022 a0001c0004t0018g0037 a0001c0004t0020g0039 a0001c0004t0020g0040 a0001c0004t0022g0057 a0001c0004t0039g0089 a0001c0004t0047g0041 a0001c0006t0004g0014 a0001c0007t0010g0065 a0001c0011t0018g0036 a0002c0002t0003g0002 a0002c0002t0003g0081 a0002c0002t0003g0084 a0002c0002t0029g0054	46	HG01071.hp1 HG01081.hp2 HG01123.hp1 others(43): Show HG01071.hp1 HG01081.hp2 HG01123.hp1 HG01192.hp1 HG01257.hp1 HG01346.hp1 HG01884.hp2 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02486.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02818.hp2 HG02886.hp2 HG02896.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG03041.hp2 HG03516.hp1 HG03540.hp2 HG03669.hp1 HG03834.hp1 NA18947.hp2 NA18951.hp2 NA18956.hp2 NA18968.hp2 NA18971.hp1 NA18984.hp1 NA18993.hp2 NA18995.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19090.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-729-229T>A c.-729-229T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821119
chrX:145821119	T T	TCACACAC others(1): Show TCACACACA	1	a0001c0004t0041g0038 a0001c0004t0041g0038	1	HG01123.hp2 HG01123.hp2	intron_variant	MODIFIER	c.-729-228_-729-227i others(10): Show c.-729-228_-729-227insACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821119
chrX:145821119	T T	TCACACAC others(7): Show TCACACACACACACA	1	a0001c0001t0026g0059 a0001c0001t0026g0059	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-729-228_-729-227i others(16): Show c.-729-228_-729-227insACACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821119
chrX:145821119	T T	TCACTCAC others(1): Show TCACTCACA	2	a0001c0001t0001g0077 a0001c0005t0051g0092 a0001c0001t0001g0077 a0001c0005t0051g0092	2	HG03209.hp1 HG03453.hp1 HG03209.hp1 HG03453.hp1	intron_variant	MODIFIER	c.-729-228_-729-227i others(10): Show c.-729-228_-729-227insACTCACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821119
chrX:145821119	T T	TCACTCAC others(3): Show TCACTCACACA	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18949.hp2 NA18949.hp2	intron_variant	MODIFIER	c.-729-228_-729-227i others(12): Show c.-729-228_-729-227insACTCACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821119
chrX:145821119	T T	TCTCTCTC others(1): Show TCTCTCTCA	1	a0004c0010t0002g0051 a0004c0010t0002g0051	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.-729-226_-729-225i others(10): Show c.-729-226_-729-225insTCTCACTC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821119
chrX:145821121	T T	A A	22	a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0003g0029 others(19): Show a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0003g0029 a0001c0001t0008g0053 a0001c0001t0008g0093 a0001c0001t0026g0059 a0001c0004t0041g0038 a0001c0005t0003g0019 a0001c0005t0003g0042 a0001c0005t0023g0019 a0001c0005t0051g0092 a0001c0011t0018g0036 a0002c0002t0003g0005 a0002c0002t0003g0028 a0002c0002t0003g0084 a0002c0002t0003g0085 a0002c0002t0003g0086 a0002c0002t0021g0005 a0002c0002t0024g0005 a0002c0002t0029g0054 a0002c0002t0048g0028 a0002c0002t0050g0005	28	HG01123.hp2 HG01433.hp1 HG02080.hp1 others(25): Show HG01123.hp2 HG01433.hp1 HG02080.hp1 HG02602.hp1 HG02615.hp2 HG02886.hp2 HG03041.hp2 HG03195.hp1 HG03209.hp1 HG03453.hp1 HG03471.hp1 HG04184.hp1 HG06807.hp2 NA18612.hp1 NA18941.hp1 NA18949.hp2 NA18956.hp1 NA18964.hp2 NA18970.hp1 NA18973.hp1 NA18978.hp2 NA18989.hp1 NA19060.hp1 NA19067.hp1 NA19079.hp1 NA19086.hp1 NA19087.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-729-227T>A c.-729-227T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821121
chrX:145821121	T T	TCACA TCACA	2	a0001c0003t0002g0052 a0001c0004t0018g0037 a0001c0003t0002g0052 a0001c0004t0018g0037	2	HG01346.hp1 HG02970.hp2 HG01346.hp1 HG02970.hp2	intron_variant	MODIFIER	c.-729-224_-729-223i others(6): Show c.-729-224_-729-223insACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	T T	TCACACA TCACACA	3	a0001c0001t0001g0027 a0001c0001t0030g0056 a0001c0004t0020g0040 a0001c0001t0001g0027 a0001c0001t0030g0056 a0001c0004t0020g0040	3	HG01071.hp1 HG02622.hp1 NA18956.hp2 HG01071.hp1 HG02622.hp1 NA18956.hp2	intron_variant	MODIFIER	c.-729-224_-729-223i others(8): Show c.-729-224_-729-223insACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	T T	TCACACAC others(1): Show TCACACACA	5	a0001c0001t0001g0026 a0001c0001t0002g0026 a0001c0001t0009g0075 others(2): Show a0001c0001t0001g0026 a0001c0001t0002g0026 a0001c0001t0009g0075 a0001c0004t0020g0039 a0001c0004t0039g0089	5	HG02109.hp2 HG02132.hp1 HG02630.hp1 others(2): Show HG02109.hp2 HG02132.hp1 HG02630.hp1 HG02818.hp2 NA19009.hp1	intron_variant	MODIFIER	c.-729-224_-729-223i others(10): Show c.-729-224_-729-223insACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	T T	TCACACAC others(3): Show TCACACACACA	3	a0001c0001t0014g0014 a0001c0001t0027g0014 a0001c0006t0004g0014 a0001c0001t0014g0014 a0001c0001t0027g0014 a0001c0006t0004g0014	4	HG02896.hp2 HG02922.hp1 HG02976.hp1 others(1): Show HG02896.hp2 HG02922.hp1 HG02976.hp1 NA19240.hp1	intron_variant	MODIFIER	c.-729-224_-729-223i others(12): Show c.-729-224_-729-223insACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	T T	TCACACAC others(5): Show TCACACACACACA	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.-729-224_-729-223i others(14): Show c.-729-224_-729-223insACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	T T	TCACACAC others(7): Show TCACACACACACACA	2	a0001c0001t0008g0066 a0001c0004t0047g0041 a0001c0001t0008g0066 a0001c0004t0047g0041	2	HG03516.hp2 HG03540.hp2 HG03516.hp2 HG03540.hp2	intron_variant	MODIFIER	c.-729-224_-729-223i others(16): Show c.-729-224_-729-223insACACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	T T	TCACACAC others(9): Show TCACACACACACACACA	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.-729-224_-729-223i others(18): Show c.-729-224_-729-223insACACACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	TCA TCA	T T	1	a0001c0006t0004g0044 a0001c0006t0004g0044	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-729-225_-729-224d others(4): Show c.-729-225_-729-224delAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821121	TCACTCA TCACTCA	T T	1	a0001c0007t0010g0065 a0001c0007t0010g0065	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.-729-223_-729-218d others(8): Show c.-729-223_-729-218delTCACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821121
chrX:145821123	A A	T T	4	a0001c0005t0003g0019 a0001c0005t0003g0042 a0001c0005t0023g0019 others(1): Show a0001c0005t0003g0019 a0001c0005t0003g0042 a0001c0005t0023g0019 a0002c0002t0003g0085	4	HG03195.hp1 HG03471.hp1 HG06807.hp2 others(1): Show HG03195.hp1 HG03471.hp1 HG06807.hp2 NA18978.hp2	intron_variant	MODIFIER	c.-729-225A>T c.-729-225A>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821123
chrX:145821125	T T	A A	46	a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0076 others(43): Show a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0002g0026 a0001c0001t0003g0029 a0001c0001t0008g0053 a0001c0001t0008g0066 a0001c0001t0008g0093 a0001c0001t0009g0075 a0001c0001t0014g0014 a0001c0001t0026g0059 a0001c0001t0027g0014 a0001c0001t0030g0056 a0001c0001t0045g0002 a0001c0003t0002g0022 a0001c0003t0002g0052 a0001c0003t0036g0022 a0001c0004t0018g0037 a0001c0004t0020g0039 a0001c0004t0020g0040 a0001c0004t0022g0057 a0001c0004t0039g0089 a0001c0004t0041g0038 a0001c0004t0047g0041 a0001c0005t0003g0019 a0001c0005t0003g0042 a0001c0005t0023g0019 a0001c0005t0051g0092 a0001c0006t0004g0014 a0001c0011t0018g0036 a0002c0002t0003g0002 a0002c0002t0003g0005 a0002c0002t0003g0028 a0002c0002t0003g0081 a0002c0002t0003g0084 a0002c0002t0003g0085 a0002c0002t0003g0086 a0002c0002t0021g0005 a0002c0002t0024g0005 a0002c0002t0029g0054 a0002c0002t0048g0028 a0002c0002t0050g0005 a0004c0010t0002g0051	70	HG01071.hp1 HG01081.hp2 HG01123.hp1 others(67): Show HG01071.hp1 HG01081.hp2 HG01123.hp1 HG01123.hp2 HG01192.hp1 HG01257.hp1 HG01346.hp1 HG01433.hp1 HG01884.hp2 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02486.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02818.hp2 HG02886.hp2 HG02896.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG03041.hp2 HG03195.hp1 HG03209.hp1 HG03453.hp1 HG03471.hp1 HG03516.hp2 HG03540.hp2 HG03669.hp1 HG03831.hp1 HG03834.hp1 HG04184.hp1 HG06807.hp2 NA18612.hp1 NA18941.hp1 NA18947.hp2 NA18949.hp2 NA18951.hp2 NA18956.hp1 NA18956.hp2 NA18964.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18973.hp1 NA18978.hp2 NA18984.hp1 NA18989.hp1 NA18993.hp2 NA18995.hp1 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp2 NA19240.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-729-223T>A c.-729-223T>A	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821125
chrX:145821125	T T	TCA TCA	5	a0001c0001t0011g0063 a0001c0003t0002g0007 a0001c0003t0002g0011 others(2): Show a0001c0001t0011g0063 a0001c0003t0002g0007 a0001c0003t0002g0011 a0001c0003t0053g0030 a0001c0005t0023g0019	15	HG00642.hp1 HG01175.hp1 HG02040.hp1 others(12): Show HG00642.hp1 HG01175.hp1 HG02040.hp1 HG02155.hp1 HG02257.hp2 HG02451.hp1 HG02559.hp2 HG02615.hp1 HG02895.hp1 HG03491.hp2 HG03579.hp1 NA18906.hp1 NA18939.hp1 NA18991.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-729-195_-729-194d others(4): Show c.-729-195_-729-194dupAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACA TCACA	15	a0001c0003t0002g0006 a0001c0003t0002g0009 a0001c0003t0002g0015 others(12): Show a0001c0003t0002g0006 a0001c0003t0002g0009 a0001c0003t0002g0015 a0001c0003t0002g0031 a0001c0003t0009g0006 a0001c0003t0009g0015 a0001c0003t0015g0009 a0001c0003t0017g0006 a0001c0003t0034g0009 a0001c0008t0042g0006 a0002c0002t0003g0002 a0002c0002t0003g0043 a0002c0002t0046g0002 a0002c0002t0049g0002 a0003c0009t0017g0034	37	HG00408.hp1 HG00558.hp1 HG00621.hp1 others(34): Show HG00408.hp1 HG00558.hp1 HG00621.hp1 HG01258.hp1 HG01261.hp1 HG01975.hp2 HG02083.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02572.hp1 HG02735.hp1 HG02818.hp1 HG02970.hp1 HG03017.hp1 HG03239.hp2 HG03486.hp2 HG03490.hp1 HG03834.hp2 HG04204.hp1 HG06807.hp1 NA18946.hp1 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18964.hp1 NA18965.hp1 NA18969.hp1 NA18993.hp1 NA18998.hp1 NA19001.hp2 NA19011.hp2 NA19065.hp2 NA19088.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-729-197_-729-194d others(6): Show c.-729-197_-729-194dupACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACACA TCACACA	15	a0001c0001t0001g0010 a0001c0001t0001g0035 a0001c0001t0002g0016 others(12): Show a0001c0001t0001g0010 a0001c0001t0001g0035 a0001c0001t0002g0016 a0001c0001t0003g0005 a0001c0001t0006g0010 a0001c0003t0002g0016 a0001c0003t0002g0046 a0001c0003t0002g0047 a0001c0004t0019g0010 a0001c0004t0022g0072 a0001c0005t0003g0005 a0001c0005t0003g0010 a0001c0008t0021g0016 a0002c0002t0003g0005 a0002c0002t0052g0005	19	HG01168.hp1 HG01891.hp1 HG02280.hp2 others(16): Show HG01168.hp1 HG01891.hp1 HG02280.hp2 HG02698.hp1 HG02723.hp1 HG02886.hp1 HG02896.hp1 HG02976.hp2 HG03130.hp1 HG04184.hp2 NA18955.hp1 NA18966.hp1 NA18969.hp2 NA18972.hp1 NA18986.hp1 NA19003.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp2	intron_variant	MODIFIER	c.-729-199_-729-194d others(8): Show c.-729-199_-729-194dupACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACACAC others(1): Show TCACACACA	10	a0001c0001t0001g0003 a0001c0001t0001g0025 a0001c0001t0002g0003 others(7): Show a0001c0001t0001g0003 a0001c0001t0001g0025 a0001c0001t0002g0003 a0001c0001t0006g0003 a0001c0001t0013g0003 a0001c0001t0031g0003 a0001c0003t0002g0003 a0001c0003t0002g0049 a0001c0004t0019g0003 a0001c0014t0001g0003	29	HG00280.hp1 HG00323.hp1 HG00544.hp1 others(26): Show HG00280.hp1 HG00323.hp1 HG00544.hp1 HG00639.hp1 HG01109.hp1 HG01256.hp1 HG01257.hp2 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp2 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp1 HG03927.hp2 HG04115.hp1 NA18948.hp1 NA18953.hp1 NA18972.hp2 NA18977.hp1 NA18992.hp2 NA19004.hp1 NA19055.hp1 NA19058.hp1 NA19062.hp1 NA19064.hp2 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-729-201_-729-194d others(10): Show c.-729-201_-729-194dupACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACACAC others(3): Show TCACACACACA	31	a0001c0001t0001g0001 a0001c0001t0001g0013 a0001c0001t0001g0020 others(28): Show a0001c0001t0001g0001 a0001c0001t0001g0013 a0001c0001t0001g0020 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0062 a0001c0001t0001g0073 a0001c0001t0002g0001 a0001c0001t0002g0070 a0001c0001t0002g0078 a0001c0001t0005g0001 a0001c0001t0005g0055 a0001c0001t0006g0001 a0001c0001t0007g0001 a0001c0001t0007g0013 a0001c0001t0012g0001 a0001c0001t0013g0001 a0001c0001t0016g0001 a0001c0001t0016g0091 a0001c0001t0025g0094 a0001c0001t0032g0001 a0001c0001t0033g0001 a0001c0001t0035g0013 a0001c0001t0038g0001 a0001c0001t0040g0013 a0001c0001t0043g0001 a0001c0001t0054g0024 a0001c0003t0002g0033 a0001c0004t0028g0071	97	HG00099.hp2 HG00438.hp2 HG00544.hp2 others(94): Show HG00099.hp2 HG00438.hp2 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp2 HG01346.hp2 HG01361.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp2 HG01928.hp1 HG01978.hp1 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02109.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02293.hp1 HG02293.hp2 HG02559.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03139.hp1 HG03239.hp1 HG03453.hp2 HG03486.hp1 HG03540.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG04199.hp1 NA18522.hp1 NA18747.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18946.hp2 NA18959.hp1 NA18962.hp1 NA18967.hp1 NA18968.hp1 NA18973.hp2 NA18974.hp1 NA18978.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp2 NA19003.hp2 NA19011.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19070.hp1 NA19076.hp1 NA19077.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19087.hp1 NA19090.hp1 NA20805.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-729-203_-729-194d others(12): Show c.-729-203_-729-194dupACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACACAC others(5): Show TCACACACACACA	13	a0001c0001t0001g0004 a0001c0001t0001g0012 a0001c0001t0001g0060 others(10): Show a0001c0001t0001g0004 a0001c0001t0001g0012 a0001c0001t0001g0060 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0002g0012 a0001c0001t0006g0004 a0001c0001t0007g0004 a0001c0001t0012g0004 a0001c0001t0012g0012 a0001c0001t0055g0004 a0001c0005t0008g0004 a0005c0013t0002g0004	29	HG00140.hp1 HG00323.hp2 HG00408.hp2 others(26): Show HG00140.hp1 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00639.hp2 HG00735.hp1 HG01069.hp1 HG01099.hp1 HG01168.hp2 HG01255.hp1 HG01358.hp1 HG02055.hp1 HG02074.hp1 HG02080.hp2 HG02129.hp1 HG03225.hp1 HG03704.hp2 HG03927.hp1 HG03942.hp1 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18994.hp1 NA19005.hp1 NA19072.hp1 NA19082.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-729-205_-729-194d others(14): Show c.-729-205_-729-194dupACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACACAC others(7): Show TCACACACACACACA	5	a0001c0001t0001g0008 a0001c0001t0001g0069 a0001c0001t0002g0008 others(2): Show a0001c0001t0001g0008 a0001c0001t0001g0069 a0001c0001t0002g0008 a0001c0001t0002g0048 a0001c0001t0002g0061	10	HG03831.hp2 NA18947.hp1 NA18949.hp1 others(7): Show HG03831.hp2 NA18947.hp1 NA18949.hp1 NA18990.hp1 NA18991.hp1 NA18992.hp1 NA19056.hp1 NA19080.hp1 NA19083.hp1 NA19240.hp2	intron_variant	MODIFIER	c.-729-207_-729-194d others(16): Show c.-729-207_-729-194dupACACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACACAC others(9): Show TCACACACACACACACA	1	a0001c0001t0005g0068 a0001c0001t0005g0068	1	NA18950.hp2 NA18950.hp2	intron_variant	MODIFIER	c.-729-209_-729-194d others(18): Show c.-729-209_-729-194dupACACACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	T T	TCACACAC others(11): Show TCACACACACACACACACA	1	a0001c0001t0008g0067 a0001c0001t0008g0067	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.-729-211_-729-194d others(20): Show c.-729-211_-729-194dupACACACACACACACACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	TCA TCA	T T	1	a0001c0006t0037g0080 a0001c0006t0037g0080	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-729-195_-729-194d others(4): Show c.-729-195_-729-194delAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821125	TCACA TCACA	T T	2	a0001c0006t0004g0021 a0001c0006t0044g0021 a0001c0006t0004g0021 a0001c0006t0044g0021	2	HG00099.hp1 HG02257.hp1 HG00099.hp1 HG02257.hp1	intron_variant	MODIFIER	c.-729-197_-729-194d others(6): Show c.-729-197_-729-194delACAC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821125
chrX:145821129	A A	T T	1	a0001c0006t0004g0044 a0001c0006t0004g0044	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-729-219A>T c.-729-219A>T	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4		chrX	145821129
chrX:145821194	A A	AC AC	1	a0002c0002t0029g0054 a0002c0002t0029g0054	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-729-149dupC c.-729-149dupC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	145821194
chrX:145821892	A A	AC AC	1	a0002c0002t0029g0054 a0002c0002t0029g0054	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-193+13dupC c.-193+13dupC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	145821892
chrX:145821984	C C	CT CT	19	a0001c0001t0001g0025 a0001c0001t0001g0062 a0001c0001t0001g0069 others(16): Show a0001c0001t0001g0025 a0001c0001t0001g0062 a0001c0001t0001g0069 a0001c0001t0004g0018 a0001c0001t0004g0074 a0001c0001t0008g0066 a0001c0001t0011g0090 a0001c0001t0030g0056 a0001c0004t0022g0057 a0001c0004t0022g0072 a0001c0004t0028g0071 a0001c0004t0041g0038 a0001c0006t0004g0021 a0001c0006t0037g0080 a0001c0006t0044g0021 a0001c0007t0010g0065 a0002c0002t0003g0028 a0002c0002t0029g0054 a0002c0002t0048g0028	22	HG00099.hp1 HG01123.hp2 HG01243.hp1 others(19): Show HG00099.hp1 HG01123.hp2 HG01243.hp1 HG02257.hp1 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02723.hp1 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG04115.hp1 HG04228.hp1 NA18906.hp2 NA18956.hp2 NA18972.hp2 NA18989.hp1 NA19067.hp1 NA19085.hp1 NA19087.hp2 NA19240.hp2 NA20300.hp2	splice_region_variant&intron_variant	LOW	c.-192-8dupT c.-192-8dupT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	145821984
chrX:145821984	C C	CTT CTT	1	a0001c0001t0004g0079 a0001c0001t0004g0079	1	HG01934.hp1 HG01934.hp1	splice_region_variant&intron_variant	LOW	c.-192-9_-192-8dupTT c.-192-9_-192-8dupTT	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	145821984
chrX:145822363	T T	TC TC	1	a0001c0001t0002g0070 a0001c0001t0002g0070	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-43-15dupC c.-43-15dupC	SLITRK2	ENSG00000185985.11	transcript	ENST00000335565.6	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	145822363

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JoGo Online Haplotype Explorer SLITRK2_chrX_145812829_145834856

JoGo Local Haplotype Explorer (on iGV) SLITRK2_chrX_145812829_145834856

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 14)

TTranscript Level Haplotype Info (Total: 55)

GGenebody Level Haplotype Info (Total: 94)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 14)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 68)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 153)

Haplotype Details by Sample (Haploid Level) (Total: 326)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 11)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 8)

TTranscript Level Haplotype Variants (Exon) (Total: 50)

GGenebody Level Haplotype Variants (Intron) (Total: 84)

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Annotation (Repeats)

Annotation (SNP Array)