Joint Open Genome and Omics Platform (JoGo)

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geneid	339287
ensemblid	ENSG00000188895.12
hgncid	27905
symbol	MSL1
name	MSL complex subunit 1
refseq_nuc	NM_001365919.1
refseq_prot	NP_001352848.1
ensembl_nuc	ENST00000398532.9
ensembl_prot	ENSP00000381543.3
mane_status	MANE Select
chr	chr17
start	40121971
end	40136917
strand	+
ver	v1.2
region	chr17:40121971-40136917
region5000	chr17:40116971-40141917
regionname0	MSL1_chr17_40121971_40136917
regionname5000	MSL1_chr17_40116971_40141917

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	614	354	86	64	166	14	22	126	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0002	0/0	211	1	0	0	1	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0003	0/0	614	1	0	0	1	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1845	288	62	52	141	10	21	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0002	0/0	1845	24	22	2	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0003	0/0	1845	13	0	0	13	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0004	0/0	1845	13	0	9	0	3	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0005	0/0	1845	6	0	0	6	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0006	0/0	1845	5	0	0	5	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0007	0/0	1845	2	0	1	0	1	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0008	0/0	1845	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0009	0/0	1874	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0010	0/0	1845	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0011	0/0	1845	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
c0012	0/0	1845	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	3191	267	50	47	139	12	17	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0002	0/0	3191	14	0	0	14	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0003	0/0	3187	12	11	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0004	0/0	3192	12	0	5	6	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0005	0/0	3193	8	0	4	3	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0006	0/0	3191	6	5	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0007	0/0	3191	5	0	4	0	1	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0008	0/0	3187	4	4	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0009	0/0	3187	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0010	0/0	3187	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0011	0/0	3187	2	1	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0012	0/0	3191	2	2	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0013	0/0	3187	2	0	1	0	1	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0014	0/0	3192	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0015	0/0	3187	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0016	0/0	3193	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0017	0/0	3187	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0018	0/0	3191	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0019	0/0	3192	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0020	0/0	3191	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0021	0/0	3191	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0022	0/0	3191	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0023	0/0	3191	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0024	0/0	3203	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0025	0/0	3191	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0026	0/0	3191	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0027	0/0	3191	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0028	0/0	3191	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
t0029	0/0	3191	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	136	23	32	69	1	10	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0002	0/0	55	0	7	48	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0003	0/0	40	16	9	9	3	3	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0004	0/0	14	13	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0005	0/0	8	2	2	2	0	2	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0006	0/0	5	0	0	3	2	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0007	0/0	5	0	0	5	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0008	0/0	5	0	1	4	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0009	0/0	5	0	4	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0010	0/0	4	2	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0011	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0012	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0013	0/0	3	1	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0014	0/0	3	0	0	0	2	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0015	0/0	3	0	0	3	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0016	0/0	3	0	0	3	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0017	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0018	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0019	0/0	2	0	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0020	0/0	2	0	0	0	0	2	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0021	0/0	2	0	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0022	0/0	2	2	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0023	0/0	2	1	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0024	0/0	2	0	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0025	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0026	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0027	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0028	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0029	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0030	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0031	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0032	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0033	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0034	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0035	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0036	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0037	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0038	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0039	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0040	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0041	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0042	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0043	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0044	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0045	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0046	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0047	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0048	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0049	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0050	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0051	0/1	1	0	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0052	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0053	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0054	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0055	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0056	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0057	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0058	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0059	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0060	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0061	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0062	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0063	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0064	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0065	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0066	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
g0067	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1845	288	62	52	141	10	21	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002	0/0	1845	24	22	2	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0003	0/0	1845	13	0	0	13	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0004	0/0	1845	13	0	9	0	3	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0005	0/0	1845	6	0	0	6	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0006	0/0	1845	5	0	0	5	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0007	0/0	1845	2	0	1	0	1	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0010	0/0	1845	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0011	0/0	1845	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0012	0/0	1845	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0002c0009	0/0	1874	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0003c0008	0/0	1845	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	5035	233	48	42	115	10	16	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0002	0/0	5035	13	0	0	13	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0004	0/0	5036	12	0	5	6	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0005	0/0	5037	7	0	4	2	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0006	0/0	5035	6	5	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0010	0/0	5031	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0012	0/0	5035	2	2	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0014	0/0	5036	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0016	0/0	5037	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0019	0/0	5036	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0020	0/0	5035	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0021	0/0	5035	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0022	0/0	5035	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0023	0/0	5035	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0024	0/0	5047	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0025	0/0	5035	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0026	0/0	5035	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0027	0/0	5035	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0001t0029	0/0	5035	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002t0003	0/0	5031	12	11	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002t0008	0/0	5031	4	4	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002t0009	0/0	5031	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002t0011	0/0	5031	2	1	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002t0015	0/0	5031	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002t0017	0/0	5031	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0002t0018	0/0	5035	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0003t0001	0/0	5035	12	0	0	12	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0003t0005	0/0	5037	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0004t0001	0/0	5035	8	0	5	0	2	1	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0004t0007	0/0	5035	5	0	4	0	1	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0005t0001	0/0	5035	6	0	0	6	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0006t0001	0/0	5035	5	0	0	5	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0007t0013	0/0	5031	2	0	1	0	1	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0010t0001	0/0	5035	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0011t0028	0/0	5035	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0001c0012t0001	0/0	5035	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0002c0009t0002	0/0	5064	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917
a0003c0008t0001	0/0	5035	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	copy fasta	chr17	40116971	40141917

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/0	94	17	26	41	1	8	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0002	0/0	47	0	6	41	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0003	0/0	30	16	4	6	2	2	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0004	0/0	8	7	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0005	0/0	3	0	2	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0006	0/0	4	0	0	2	2	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0007	0/0	4	0	0	4	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0008	0/0	4	0	1	3	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0010	0/0	3	2	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0012	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0013	0/0	2	1	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0014	0/0	2	0	0	0	2	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0015	0/0	2	0	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0020	0/0	2	0	0	0	0	2	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0021	0/0	2	0	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0027	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0028	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0030	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0032	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0037	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0039	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0041	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0042	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0043	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0044	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0046	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0050	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0051	0/1	1	0	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0064	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0065	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0066	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0001g0067	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0002g0001	0/0	12	0	0	12	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0002g0013	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0004g0001	0/0	8	0	4	4	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0004g0002	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0004g0005	0/0	2	0	0	1	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0004g0015	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0005g0001	0/0	2	0	2	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0005g0003	0/0	2	0	2	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0005g0024	0/0	2	0	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0005g0036	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0006g0004	0/0	4	4	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0006g0034	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0006g0045	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0010g0001	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0012g0005	0/0	2	2	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0014g0004	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0016g0004	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0019g0029	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0020g0001	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0021g0007	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0022g0001	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0023g0014	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0024g0002	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0025g0049	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0026g0002	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0027g0005	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0001t0029g0001	0/0	1	0	0	0	0	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0018	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0022	0/0	2	2	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0053	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0054	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0056	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0057	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0058	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0059	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0003g0063	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0008g0011	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0008g0026	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0009g0017	0/0	3	3	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0011g0023	0/0	2	1	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0015g0060	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0017g0055	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0002t0018g0052	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0003t0001g0001	0/0	11	0	0	11	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0003t0001g0006	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0003t0005g0010	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0004t0001g0003	0/0	5	0	3	0	1	1	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0004t0001g0009	0/0	2	0	1	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0004t0001g0048	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0004t0007g0009	0/0	3	0	3	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0004t0007g0025	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0004t0007g0047	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0005t0001g0002	0/0	5	0	0	5	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0005t0001g0019	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0006t0001g0003	0/0	2	0	0	2	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0006t0001g0016	0/0	3	0	0	3	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0007t0013g0061	0/0	1	0	0	0	1	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0007t0013g0062	0/0	1	0	1	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0010t0001g0001	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0011t0028g0008	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0001c0012t0001g0001	0/0	1	1	0	0	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0002c0009t0002g0001	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
a0003c0008t0001g0003	0/0	1	0	0	1	0	0	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0007	t0013	g0061	EUR	GBR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00099	hp2	a0001	c0001	t0001	g0003	EUR	GBR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00140	hp1	a0001	c0004	t0007	g0047	EUR	GBR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00280	hp1	a0001	c0001	t0001	g0027	EUR	FIN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00280	hp2	a0001	c0001	t0001	g0003	EUR	FIN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00408	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00423	hp1	a0001	c0001	t0001	g0021	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00423	hp2	a0001	c0005	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00438	hp1	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00544	hp1	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00558	hp1	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00597	hp1	a0001	c0001	t0026	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00597	hp2	a0001	c0001	t0001	g0003	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00609	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00621	hp1	a0001	c0001	t0004	g0001	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00621	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00639	hp1	a0001	c0004	t0001	g0009	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00639	hp2	a0001	c0001	t0001	g0003	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00642	hp1	a0001	c0004	t0007	g0009	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00673	hp1	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00673	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00735	hp2	a0001	c0001	t0006	g0034	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00738	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00741	hp1	a0001	c0001	t0004	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG00741	hp2	a0001	c0004	t0001	g0003	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01070	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01074	hp2	a0001	c0001	t0001	g0028	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01081	hp1	a0001	c0002	t0011	g0023	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01099	hp1	a0001	c0001	t0004	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01099	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01106	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01109	hp1	a0001	c0001	t0001	g0005	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01109	hp2	a0001	c0002	t0003	g0058	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01168	hp2	a0001	c0001	t0001	g0064	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01175	hp1	a0001	c0001	t0001	g0005	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01192	hp1	a0001	c0001	t0005	g0003	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01192	hp2	a0001	c0001	t0004	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01243	hp1	a0001	c0001	t0001	g0003	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01243	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01255	hp2	a0001	c0001	t0001	g0002	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01256	hp1	a0001	c0001	t0005	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01256	hp2	a0001	c0004	t0007	g0009	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01258	hp2	a0001	c0001	t0005	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01261	hp1	a0001	c0004	t0001	g0003	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01261	hp2	a0001	c0001	t0004	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01346	hp2	a0001	c0001	t0005	g0003	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01358	hp1	a0001	c0001	t0001	g0008	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01358	hp2	a0001	c0001	t0001	g0002	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01433	hp1	a0001	c0004	t0007	g0009	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01433	hp2	a0001	c0001	t0001	g0003	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01496	hp1	a0001	c0001	t0004	g0002	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01515	hp1	a0001	c0001	t0001	g0032	EUR	IBS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01515	hp2	a0001	c0001	t0001	g0006	EUR	IBS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01516	hp1	a0001	c0001	t0001	g0039	EUR	IBS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01516	hp2	a0001	c0001	t0001	g0014	EUR	IBS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01517	hp1	a0001	c0001	t0001	g0014	EUR	IBS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01517	hp2	a0001	c0001	t0001	g0006	EUR	IBS	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01884	hp1	a0001	c0001	t0001	g0012	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01884	hp2	a0001	c0001	t0001	g0003	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01891	hp2	a0001	c0001	t0001	g0046	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01934	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01943	hp2	a0001	c0001	t0001	g0003	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01952	hp2	a0001	c0004	t0007	g0025	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01981	hp1	a0001	c0001	t0001	g0050	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02015	hp1	a0001	c0006	t0001	g0003	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02027	hp1	a0001	c0001	t0001	g0007	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02027	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02040	hp1	a0001	c0001	t0001	g0021	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02040	hp2	a0001	c0001	t0001	g0035	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02055	hp1	a0001	c0012	t0001	g0001	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02055	hp2	a0001	c0001	t0001	g0003	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02056	hp1	a0001	c0001	t0004	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02056	hp2	a0001	c0001	t0002	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02080	hp1	a0001	c0001	t0002	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02080	hp2	a0001	c0005	t0001	g0002	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02083	hp1	a0001	c0001	t0001	g0002	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02083	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02129	hp1	a0001	c0001	t0027	g0005	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02132	hp1	a0001	c0006	t0001	g0003	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02132	hp2	a0001	c0001	t0001	g0002	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02135	hp1	a0001	c0001	t0004	g0005	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02135	hp2	a0001	c0001	t0004	g0001	EAS	KHV	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02145	hp1	a0001	c0001	t0001	g0003	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02148	hp1	a0001	c0004	t0001	g0048	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02148	hp2	a0001	c0007	t0013	g0062	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02155	hp2	a0001	c0001	t0019	g0029	EAS	CDX	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02257	hp1	a0001	c0002	t0008	g0011	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02258	hp2	a0001	c0002	t0008	g0011	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02273	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02280	hp1	a0001	c0001	t0025	g0049	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02280	hp2	a0001	c0002	t0009	g0017	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02572	hp1	a0001	c0002	t0003	g0063	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02572	hp2	a0001	c0001	t0001	g0004	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02615	hp1	a0001	c0001	t0001	g0012	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02615	hp2	a0001	c0001	t0006	g0004	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02622	hp1	a0001	c0001	t0012	g0005	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02622	hp2	a0001	c0001	t0001	g0003	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02647	hp1	a0001	c0001	t0020	g0001	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02647	hp2	a0001	c0001	t0001	g0003	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02717	hp1	a0001	c0001	t0001	g0003	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02717	hp2	a0001	c0001	t0001	g0004	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02723	hp1	a0001	c0002	t0003	g0054	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02723	hp2	a0001	c0001	t0010	g0001	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02735	hp1	a0001	c0001	t0001	g0005	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02735	hp2	a0001	c0004	t0001	g0003	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02809	hp1	a0001	c0001	t0001	g0003	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02809	hp2	a0001	c0001	t0014	g0004	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02818	hp1	a0001	c0001	t0001	g0010	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02818	hp2	a0001	c0001	t0006	g0045	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02886	hp1	a0001	c0001	t0001	g0004	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02886	hp2	a0001	c0002	t0003	g0057	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02922	hp2	a0001	c0002	t0009	g0017	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02965	hp1	a0001	c0001	t0012	g0005	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02965	hp2	a0001	c0001	t0001	g0001	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02970	hp1	a0001	c0002	t0003	g0056	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02970	hp2	a0001	c0001	t0001	g0004	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02976	hp1	a0001	c0002	t0003	g0018	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02976	hp2	a0001	c0001	t0010	g0001	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03017	hp1	a0001	c0001	t0001	g0003	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03017	hp2	a0001	c0001	t0001	g0042	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03041	hp1	a0001	c0001	t0010	g0001	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03041	hp2	a0001	c0001	t0001	g0003	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03098	hp1	a0001	c0002	t0003	g0018	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03098	hp2	a0001	c0001	t0001	g0001	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03130	hp1	a0001	c0001	t0001	g0003	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03130	hp2	a0001	c0002	t0003	g0018	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03195	hp1	a0001	c0010	t0001	g0001	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03209	hp2	a0001	c0001	t0001	g0003	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03225	hp2	a0001	c0002	t0003	g0022	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03453	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03453	hp2	a0001	c0001	t0006	g0004	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03486	hp1	a0001	c0001	t0001	g0004	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03491	hp1	a0001	c0001	t0029	g0001	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03491	hp2	a0001	c0001	t0001	g0020	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03492	hp2	a0001	c0001	t0001	g0020	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03540	hp1	a0001	c0002	t0017	g0055	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03540	hp2	a0001	c0001	t0001	g0010	AFR	GWD	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03579	hp1	a0001	c0001	t0001	g0003	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03579	hp2	a0001	c0002	t0003	g0053	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03654	hp2	a0001	c0001	t0005	g0036	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03688	hp1	a0001	c0001	t0001	g0065	SAS	STU	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03831	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03831	hp2	a0001	c0001	t0023	g0014	SAS	BEB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03834	hp1	a0001	c0001	t0001	g0041	SAS	BEB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03927	hp1	a0001	c0001	t0001	g0003	SAS	BEB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03927	hp2	a0001	c0001	t0004	g0005	SAS	BEB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18522	hp1	a0001	c0001	t0016	g0004	AFR	YRI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18522	hp2	a0001	c0001	t0001	g0003	AFR	YRI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18747	hp1	a0001	c0001	t0001	g0002	EAS	CHB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18906	hp1	a0001	c0001	t0001	g0004	AFR	YRI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18906	hp2	a0001	c0001	t0001	g0043	AFR	YRI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18939	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18939	hp2	a0001	c0001	t0001	g0006	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18940	hp1	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18940	hp2	a0001	c0005	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18941	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18943	hp2	a0001	c0001	t0001	g0007	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18944	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18944	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18947	hp1	a0001	c0001	t0004	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18947	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18948	hp1	a0001	c0001	t0001	g0030	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18948	hp2	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18949	hp1	a0001	c0001	t0001	g0015	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18951	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18953	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18953	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18954	hp1	a0001	c0001	t0001	g0037	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18954	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18957	hp1	a0001	c0001	t0001	g0040	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18957	hp2	a0001	c0006	t0001	g0016	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18960	hp1	a0001	c0001	t0001	g0066	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18960	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18961	hp1	a0001	c0005	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18961	hp2	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18963	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18963	hp2	a0001	c0001	t0001	g0010	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18964	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18965	hp1	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18965	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18966	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18966	hp2	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18968	hp1	a0001	c0001	t0001	g0007	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18968	hp2	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18969	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18970	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18971	hp1	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18971	hp2	a0001	c0001	t0001	g0003	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18972	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18972	hp2	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18974	hp2	a0003	c0008	t0001	g0003	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18975	hp2	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18977	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18977	hp2	a0001	c0011	t0028	g0008	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18978	hp1	a0001	c0001	t0002	g0013	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18978	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18979	hp1	a0001	c0001	t0001	g0038	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18979	hp2	a0001	c0001	t0001	g0015	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18980	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18980	hp2	a0001	c0001	t0021	g0007	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18982	hp1	a0001	c0003	t0001	g0006	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18982	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18983	hp1	a0001	c0006	t0001	g0016	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18983	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18984	hp2	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18985	hp1	a0001	c0001	t0001	g0008	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18985	hp2	a0001	c0001	t0024	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18986	hp1	a0001	c0001	t0001	g0019	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18986	hp2	a0001	c0005	t0001	g0019	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18990	hp2	a0001	c0003	t0005	g0010	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18993	hp1	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18993	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18995	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18995	hp2	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18997	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18997	hp2	a0001	c0001	t0001	g0033	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18998	hp1	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18999	hp1	a0001	c0001	t0001	g0031	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA18999	hp2	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19000	hp1	a0001	c0001	t0004	g0015	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19000	hp2	a0001	c0001	t0001	g0013	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19002	hp1	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19002	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19004	hp1	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19004	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19005	hp1	a0001	c0005	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19005	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19007	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19010	hp1	a0001	c0001	t0001	g0067	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19010	hp2	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19011	hp1	a0001	c0001	t0005	g0024	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19030	hp1	a0001	c0002	t0003	g0022	AFR	LWK	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19030	hp2	a0001	c0001	t0006	g0004	AFR	LWK	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19043	hp1	a0001	c0001	t0001	g0004	AFR	LWK	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19043	hp2	a0001	c0001	t0001	g0012	AFR	LWK	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19056	hp1	a0001	c0001	t0005	g0024	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19056	hp2	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19060	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19060	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19065	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19066	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19067	hp2	a0001	c0001	t0001	g0044	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19070	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19070	hp2	a0001	c0001	t0001	g0006	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19074	hp1	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19074	hp2	a0001	c0006	t0001	g0016	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19077	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19077	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19079	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19080	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19080	hp2	a0001	c0001	t0001	g0004	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19081	hp1	a0001	c0001	t0001	g0007	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19081	hp2	a0001	c0001	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19082	hp1	a0002	c0009	t0002	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19082	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19084	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19085	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19087	hp1	a0001	c0003	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19087	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19088	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19088	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19090	hp1	a0001	c0001	t0001	g0008	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19090	hp2	a0001	c0001	t0001	g0008	EAS	JPT	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19240	hp1	a0001	c0001	t0001	g0003	AFR	YRI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20129	hp2	a0001	c0002	t0011	g0023	AFR	ASW	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20752	hp1	a0001	c0004	t0001	g0009	EUR	TSI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20752	hp2	a0001	c0004	t0001	g0003	EUR	TSI	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20905	hp1	a0001	c0001	t0022	g0001	SAS	GIH	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20905	hp2	a0001	c0001	t0001	g0001	SAS	GIH	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01123	hp1	a0001	c0004	t0001	g0003	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG01123	hp2	a0001	c0001	t0001	g0002	AMR	CLM	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02109	hp1	a0001	c0002	t0003	g0059	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02109	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02486	hp1	a0001	c0002	t0008	g0026	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02486	hp2	a0001	c0002	t0008	g0011	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02559	hp1	a0001	c0001	t0001	g0003	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG02559	hp2	a0001	c0001	t0001	g0003	AFR	ACB	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03471	hp1	a0001	c0001	t0006	g0004	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG03471	hp2	a0001	c0002	t0018	g0052	AFR	MSL	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
HG06807	hp2	a0001	c0002	t0009	g0017	AFR	USA	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20300	hp1	a0001	c0001	t0001	g0013	AFR	USA	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA20300	hp2	a0001	c0001	t0001	g0003	AFR	USA	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA21309	hp1	a0001	c0001	t0001	g0001	AFR	LWK	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
NA21309	hp2	a0001	c0002	t0015	g0060	AFR	LWK	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0051	REF	REF	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	MSL1_chr17_40116971_40141917	MSL1	chr17	40116971	40141917

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr17:40122824	C C	A A	1	a0003 a0003	1	NA18974.hp2 NA18974.hp2	missense_variant	MODERATE	c.212C>A c.212C>A	p.Pro71Gln p.Pro71Gln	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	854/5035	212/1845	71/614	chr17	40122824
chr17:40122982	G G	C C	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.370G>C c.370G>C	p.Gly124Arg p.Gly124Arg	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1012/5035	370/1845	124/614	chr17	40122982
chr17:40122983	G G	GGCAAGGC others(22): Show GGCAAGGCTGCCACGGTTTGGGGGGGGGCC	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.371_372insGCAAGGCT others(21): Show c.371_372insGCAAGGCTGCCACGGTTTGGGGGGGGGCC	p.Cys125fs p.Cys125fs	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1014/5035	372/1845	124/614	chr17	40122983
chr17:40122988	A A	C C	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.376A>C c.376A>C	p.Ser126Arg p.Ser126Arg	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1018/5035	376/1845	126/614	chr17	40122988
chr17:40122991	C C	A A	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.379C>A c.379C>A	p.Pro127Thr p.Pro127Thr	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1021/5035	379/1845	127/614	chr17	40122991
chr17:40122992	C C	G G	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.380C>G c.380C>G	p.Pro127Arg p.Pro127Arg	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1022/5035	380/1845	127/614	chr17	40122992
chr17:40122997	C C	G G	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.385C>G c.385C>G	p.Pro129Ala p.Pro129Ala	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1027/5035	385/1845	129/614	chr17	40122997
chr17:40123000	A A	G G	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.388A>G c.388A>G	p.Lys130Glu p.Lys130Glu	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1030/5035	388/1845	130/614	chr17	40123000
chr17:40123001	A A	G G	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.389A>G c.389A>G	p.Lys130Arg p.Lys130Arg	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1031/5035	389/1845	130/614	chr17	40123001
chr17:40123002	G G	C C	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.390G>C c.390G>C	p.Lys130Asn p.Lys130Asn	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1032/5035	390/1845	130/614	chr17	40123002
chr17:40123004	A A	G G	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.392A>G c.392A>G	p.Tyr131Cys p.Tyr131Cys	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1034/5035	392/1845	131/614	chr17	40123004
chr17:40123007	A A	G G	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.395A>G c.395A>G	p.Gln132Arg p.Gln132Arg	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1037/5035	395/1845	132/614	chr17	40123007
chr17:40123009	G G	C C	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.397G>C c.397G>C	p.Ala133Pro p.Ala133Pro	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1039/5035	397/1845	133/614	chr17	40123009
chr17:40123010	C C	G G	1	a0002 a0002	1	NA19082.hp1 NA19082.hp1	missense_variant	MODERATE	c.398C>G c.398C>G	p.Ala133Gly p.Ala133Gly	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1040/5035	398/1845	133/614	chr17	40123010

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr17:40122783	C C	G G	1	a0001c0004 a0001c0004	13	HG00140.hp1 HG00639.hp1 HG00642.hp1 others(10): Show HG00140.hp1 HG00639.hp1 HG00642.hp1 HG00741.hp2 HG01123.hp1 HG01256.hp2 HG01261.hp1 HG01433.hp1 HG01952.hp2 HG02148.hp1 HG02735.hp2 NA20752.hp1 NA20752.hp2	synonymous_variant	LOW	c.171C>G c.171C>G	p.Pro57Pro p.Pro57Pro	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	813/5035	171/1845	57/614	chr17	40122783
chr17:40122876	C C	T T	1	a0001c0012 a0001c0012	1	HG02055.hp1 HG02055.hp1	synonymous_variant	LOW	c.264C>T c.264C>T	p.Ala88Ala p.Ala88Ala	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	906/5035	264/1845	88/614	chr17	40122876
chr17:40123005	T T	C C	1	a0002c0009 a0002c0009	1	NA19082.hp1 NA19082.hp1	synonymous_variant	LOW	c.393T>C c.393T>C	p.Tyr131Tyr p.Tyr131Tyr	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1035/5035	393/1845	131/614	chr17	40123005
chr17:40123134	A A	G G	1	a0001c0006 a0001c0006	5	HG02015.hp1 HG02132.hp1 NA18957.hp2 others(2): Show HG02015.hp1 HG02132.hp1 NA18957.hp2 NA18983.hp1 NA19074.hp2	synonymous_variant	LOW	c.522A>G c.522A>G	p.Pro174Pro p.Pro174Pro	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1164/5035	522/1845	174/614	chr17	40123134
chr17:40123233	C C	T T	1	a0001c0011 a0001c0011	1	NA18977.hp2 NA18977.hp2	synonymous_variant	LOW	c.621C>T c.621C>T	p.Leu207Leu p.Leu207Leu	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	1263/5035	621/1845	207/614	chr17	40123233
chr17:40126371	C C	T T	2	a0001c0002 a0001c0007 a0001c0002 a0001c0007	26	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(23): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	synonymous_variant	LOW	c.957C>T c.957C>T	p.Pro319Pro p.Pro319Pro	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/9	1599/5035	957/1845	319/614	chr17	40126371
chr17:40129440	C C	A A	1	a0001c0007 a0001c0007	2	HG00099.hp1 HG02148.hp2 HG00099.hp1 HG02148.hp2	synonymous_variant	LOW	c.1188C>A c.1188C>A	p.Thr396Thr p.Thr396Thr	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/9	1830/5035	1188/1845	396/614	chr17	40129440
chr17:40129482	T T	C C	1	a0001c0003 a0001c0003	13	NA18940.hp1 NA18965.hp1 NA18966.hp2 others(10): Show NA18940.hp1 NA18965.hp1 NA18966.hp2 NA18982.hp1 NA18984.hp2 NA18990.hp2 NA18995.hp2 NA18998.hp1 NA18999.hp2 NA19004.hp1 NA19010.hp2 NA19056.hp2 NA19087.hp1	synonymous_variant	LOW	c.1230T>C c.1230T>C	p.His410His p.His410His	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/9	1872/5035	1230/1845	410/614	chr17	40129482
chr17:40129548	T T	C C	1	a0001c0010 a0001c0010	1	HG03195.hp1 HG03195.hp1	synonymous_variant	LOW	c.1296T>C c.1296T>C	p.Tyr432Tyr p.Tyr432Tyr	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/9	1938/5035	1296/1845	432/614	chr17	40129548
chr17:40132065	T T	C C	1	a0001c0005 a0001c0005	6	HG00423.hp2 HG02080.hp2 NA18940.hp2 others(3): Show HG00423.hp2 HG02080.hp2 NA18940.hp2 NA18961.hp1 NA18986.hp2 NA19005.hp1	synonymous_variant	LOW	c.1455T>C c.1455T>C	p.Pro485Pro p.Pro485Pro	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/9	2097/5035	1455/1845	485/614	chr17	40132065

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr17:40121981	C C	T T	1	a0001c0007t0013 a0001c0007t0013	2	HG00099.hp1 HG02148.hp2 HG00099.hp1 HG02148.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-632C>T c.-632C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9			chr17	40121981
chr17:40121985	T T	C C	10	a0001c0001t0006 a0001c0001t0014 a0001c0001t0016 others(7): Show a0001c0001t0006 a0001c0001t0014 a0001c0001t0016 a0001c0002t0003 a0001c0002t0009 a0001c0002t0011 a0001c0002t0015 a0001c0002t0017 a0001c0002t0018 a0001c0007t0013	30	HG00099.hp1 HG00735.hp2 HG01081.hp1 others(27): Show HG00099.hp1 HG00735.hp2 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02280.hp2 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA18522.hp1 NA19030.hp1 NA19030.hp2 NA20129.hp2 NA21309.hp2	5_prime_UTR_variant	MODIFIER	c.-628T>C c.-628T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	628		chr17	40121985
chr17:40122016	C C	T T	1	a0001c0002t0018 a0001c0002t0018	1	HG03471.hp2 HG03471.hp2	5_prime_UTR_variant	MODIFIER	c.-597C>T c.-597C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	597		chr17	40122016
chr17:40122276	C C	T T	1	a0001c0001t0029 a0001c0001t0029	1	HG03491.hp1 HG03491.hp1	5_prime_UTR_variant	MODIFIER	c.-337C>T c.-337C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	337		chr17	40122276
chr17:40122526	T T	TC TC	3	a0001c0001t0004 a0001c0001t0014 a0001c0001t0019 a0001c0001t0004 a0001c0001t0014 a0001c0001t0019	14	HG00621.hp1 HG00741.hp1 HG01099.hp1 others(11): Show HG00621.hp1 HG00741.hp1 HG01099.hp1 HG01192.hp2 HG01261.hp2 HG01496.hp1 HG02056.hp1 HG02135.hp1 HG02135.hp2 HG02155.hp2 HG02809.hp2 HG03927.hp2 NA18947.hp1 NA19000.hp1	5_prime_UTR_variant	MODIFIER	c.-79dupC c.-79dupC	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	78	INFO_REALIGN_3_PRIME	chr17	40122526
chr17:40122532	C C	G G	1	a0001c0011t0028 a0001c0011t0028	1	NA18977.hp2 NA18977.hp2	5_prime_UTR_variant	MODIFIER	c.-81C>G c.-81C>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	81		chr17	40122532
chr17:40122533	C C	G G	1	a0001c0001t0027 a0001c0001t0027	1	HG02129.hp1 HG02129.hp1	5_prime_UTR_variant	MODIFIER	c.-80C>G c.-80C>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	80		chr17	40122533
chr17:40122533	C C	T T	1	a0001c0001t0010 a0001c0001t0010	3	HG02723.hp2 HG02976.hp2 HG03041.hp1 HG02723.hp2 HG02976.hp2 HG03041.hp1	5_prime_UTR_variant	MODIFIER	c.-80C>T c.-80C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	80		chr17	40122533
chr17:40122534	C C	G G	1	a0001c0004t0007 a0001c0004t0007	5	HG00140.hp1 HG00642.hp1 HG01256.hp2 others(2): Show HG00140.hp1 HG00642.hp1 HG01256.hp2 HG01433.hp1 HG01952.hp2	5_prime_UTR_variant	MODIFIER	c.-79C>G c.-79C>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	79		chr17	40122534
chr17:40122574	C C	T T	3	a0001c0001t0002 a0001c0007t0013 a0002c0009t0002 a0001c0001t0002 a0001c0007t0013 a0002c0009t0002	16	HG00099.hp1 HG02056.hp2 HG02080.hp1 others(13): Show HG00099.hp1 HG02056.hp2 HG02080.hp1 HG02148.hp2 NA18948.hp2 NA18961.hp2 NA18968.hp2 NA18971.hp1 NA18972.hp2 NA18975.hp2 NA18978.hp1 NA18993.hp1 NA19002.hp1 NA19074.hp1 NA19081.hp2 NA19082.hp1	5_prime_UTR_variant	MODIFIER	c.-39C>T c.-39C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/9	39		chr17	40122574
chr17:40134570	T T	C C	1	a0001c0001t0020 a0001c0001t0020	1	HG02647.hp1 HG02647.hp1	3_prime_UTR_variant	MODIFIER	c.201T>C c.201T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	201		chr17	40134570
chr17:40134663	T T	G G	1	a0001c0001t0021 a0001c0001t0021	1	NA18980.hp2 NA18980.hp2	3_prime_UTR_variant	MODIFIER	c.294T>G c.294T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	294		chr17	40134663
chr17:40134781	A A	C C	1	a0001c0001t0026 a0001c0001t0026	1	HG00597.hp1 HG00597.hp1	3_prime_UTR_variant	MODIFIER	c.412A>C c.412A>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	412		chr17	40134781
chr17:40134785	T T	A A	1	a0001c0001t0022 a0001c0001t0022	1	NA20905.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.416T>A c.416T>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	416		chr17	40134785
chr17:40134958	T T	G G	1	a0001c0002t0015 a0001c0002t0015	1	NA21309.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.589T>G c.589T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	589		chr17	40134958
chr17:40134994	G G	A A	1	a0001c0001t0023 a0001c0001t0023	1	HG03831.hp2 HG03831.hp2	3_prime_UTR_variant	MODIFIER	c.625G>A c.625G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	625		chr17	40134994
chr17:40135013	A A	G G	1	a0001c0002t0008 a0001c0002t0008	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	3_prime_UTR_variant	MODIFIER	c.644A>G c.644A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	644		chr17	40135013
chr17:40135298	A A	AACAAACA others(5): Show AACAAACAGATGT	1	a0001c0001t0024 a0001c0001t0024	1	NA18985.hp2 NA18985.hp2	3_prime_UTR_variant	MODIFIER	c.932_943dupAAACAG others(6): Show c.932_943dupAAACAGATGTAC	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	944	INFO_REALIGN_3_PRIME	chr17	40135298
chr17:40135305	A A	G G	1	a0001c0001t0012 a0001c0001t0012	2	HG02622.hp1 HG02965.hp1 HG02622.hp1 HG02965.hp1	3_prime_UTR_variant	MODIFIER	c.936A>G c.936A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	936		chr17	40135305
chr17:40135433	A A	G G	1	a0001c0002t0017 a0001c0002t0017	1	HG03540.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.1064A>G c.1064A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1064		chr17	40135433
chr17:40135567	G G	A A	1	a0001c0001t0025 a0001c0001t0025	1	HG02280.hp1 HG02280.hp1	3_prime_UTR_variant	MODIFIER	c.1198G>A c.1198G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1198		chr17	40135567
chr17:40135568	C C	T T	7	a0001c0002t0003 a0001c0002t0009 a0001c0002t0011 others(4): Show a0001c0002t0003 a0001c0002t0009 a0001c0002t0011 a0001c0002t0015 a0001c0002t0017 a0001c0002t0018 a0001c0007t0013	22	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(19): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02280.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.1199C>T c.1199C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1199		chr17	40135568
chr17:40135839	T T	TTG TTG	3	a0001c0001t0005 a0001c0001t0016 a0001c0003t0005 a0001c0001t0005 a0001c0001t0016 a0001c0003t0005	9	HG01192.hp1 HG01256.hp1 HG01258.hp2 others(6): Show HG01192.hp1 HG01256.hp1 HG01258.hp2 HG01346.hp2 HG03654.hp2 NA18522.hp1 NA18990.hp2 NA19011.hp1 NA19056.hp1	3_prime_UTR_variant	MODIFIER	c.1493_1494dupTG c.1493_1494dupTG	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1495	INFO_REALIGN_3_PRIME	chr17	40135839
chr17:40135839	TTGTG TTGTG	T T	8	a0001c0001t0010 a0001c0002t0003 a0001c0002t0008 others(5): Show a0001c0001t0010 a0001c0002t0003 a0001c0002t0008 a0001c0002t0009 a0001c0002t0011 a0001c0002t0015 a0001c0002t0017 a0001c0007t0013	28	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(25): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02723.hp2 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.1491_1494delTGTG c.1491_1494delTGTG	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1491	INFO_REALIGN_3_PRIME	chr17	40135839
chr17:40136021	A A	G G	1	a0001c0001t0019 a0001c0001t0019	1	HG02155.hp2 HG02155.hp2	3_prime_UTR_variant	MODIFIER	c.1652A>G c.1652A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1652		chr17	40136021
chr17:40136189	G G	A A	1	a0001c0002t0011 a0001c0002t0011	2	HG01081.hp1 NA20129.hp2 HG01081.hp1 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.1820G>A c.1820G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1820		chr17	40136189
chr17:40136290	G G	A A	2	a0001c0002t0009 a0001c0002t0018 a0001c0002t0009 a0001c0002t0018	4	HG02280.hp2 HG02922.hp2 HG03471.hp2 others(1): Show HG02280.hp2 HG02922.hp2 HG03471.hp2 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.1921G>A c.1921G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1921		chr17	40136290
chr17:40136303	G G	A A	1	a0001c0002t0015 a0001c0002t0015	1	NA21309.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.1934G>A c.1934G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	1934		chr17	40136303
chr17:40136455	C C	T T	1	a0001c0001t0025 a0001c0001t0025	1	HG02280.hp1 HG02280.hp1	3_prime_UTR_variant	MODIFIER	c.2086C>T c.2086C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	2086		chr17	40136455
chr17:40136617	T T	C C	1	a0001c0002t0015 a0001c0002t0015	1	NA21309.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.2248T>C c.2248T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	9/9	2248		chr17	40136617

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr17:40123478	G G	A A	1	a0001c0004t0007g0025 a0001c0004t0007g0025	1	HG01952.hp2 HG01952.hp2	intron_variant	MODIFIER	c.768+98G>A c.768+98G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40123478
chr17:40123701	A A	AGGGTGGG others(4): Show AGGGTGGGGTGT	2	a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0066 a0001c0001t0001g0067	2	NA18960.hp1 NA19010.hp1 NA18960.hp1 NA19010.hp1	intron_variant	MODIFIER	c.768+322_768+332dup others(11): Show c.768+322_768+332dupGGGTGGGGTGT	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8	INFO_REALIGN_3_PRIME	chr17	40123701
chr17:40123977	C C	T T	6	a0001c0001t0001g0005 a0001c0001t0001g0064 a0001c0001t0001g0065 others(3): Show a0001c0001t0001g0005 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0004g0005 a0001c0001t0012g0005 a0001c0001t0027g0005	10	HG01109.hp1 HG01168.hp2 HG01175.hp1 others(7): Show HG01109.hp1 HG01168.hp2 HG01175.hp1 HG02129.hp1 HG02135.hp1 HG02622.hp1 HG02735.hp1 HG02965.hp1 HG03688.hp1 HG03927.hp2	intron_variant	MODIFIER	c.768+597C>T c.768+597C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40123977
chr17:40124124	C C	A A	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.768+744C>A c.768+744C>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40124124
chr17:40124216	T T	G G	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.768+836T>G c.768+836T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40124216
chr17:40124326	C C	T T	1	a0001c0001t0005g0024 a0001c0001t0005g0024	2	NA19011.hp1 NA19056.hp1 NA19011.hp1 NA19056.hp1	intron_variant	MODIFIER	c.768+946C>T c.768+946C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40124326
chr17:40124458	C C	T T	1	a0001c0002t0003g0063 a0001c0002t0003g0063	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.768+1078C>T c.768+1078C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40124458
chr17:40124663	C C	T T	2	a0001c0007t0013g0061 a0001c0007t0013g0062 a0001c0007t0013g0061 a0001c0007t0013g0062	2	HG00099.hp1 HG02148.hp2 HG00099.hp1 HG02148.hp2	intron_variant	MODIFIER	c.768+1283C>T c.768+1283C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40124663
chr17:40124699	G G	A A	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG01074.hp2 HG01074.hp2	intron_variant	MODIFIER	c.768+1319G>A c.768+1319G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40124699
chr17:40125052	C C	T T	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.769-1131C>T c.769-1131C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125052
chr17:40125136	A A	C C	1	a0001c0002t0015g0060 a0001c0002t0015g0060	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.769-1047A>C c.769-1047A>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125136
chr17:40125303	A A	AT AT	18	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(15): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0007t0013g0061 a0001c0007t0013g0062	26	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(23): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.769-878dupT c.769-878dupT	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8	INFO_REALIGN_3_PRIME	chr17	40125303
chr17:40125327	C C	T T	1	a0001c0007t0013g0062 a0001c0007t0013g0062	1	HG02148.hp2 HG02148.hp2	intron_variant	MODIFIER	c.769-856C>T c.769-856C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125327
chr17:40125328	C C	G G	13	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(10): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0011g0023 a0001c0002t0017g0055 a0001c0007t0013g0061 a0001c0007t0013g0062	17	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(14): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03540.hp1 HG03579.hp2 NA19030.hp1 NA20129.hp2	intron_variant	MODIFIER	c.769-855C>G c.769-855C>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125328
chr17:40125453	T T	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	3	HG01884.hp1 HG02615.hp1 NA19043.hp2 HG01884.hp1 HG02615.hp1 NA19043.hp2	intron_variant	MODIFIER	c.769-730T>C c.769-730T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125453
chr17:40125454	G G	A A	10	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(7): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0017g0055	13	HG01109.hp2 HG02109.hp1 HG02572.hp1 others(10): Show HG01109.hp2 HG02109.hp1 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03540.hp1 HG03579.hp2 NA19030.hp1	intron_variant	MODIFIER	c.769-729G>A c.769-729G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125454
chr17:40125591	C C	T T	18	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(15): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0007t0013g0061 a0001c0007t0013g0062	26	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(23): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.769-592C>T c.769-592C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125591
chr17:40125595	G G	A A	4	a0001c0002t0003g0018 a0001c0002t0003g0053 a0001c0002t0003g0054 others(1): Show a0001c0002t0003g0018 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0017g0055	6	HG02723.hp1 HG02976.hp1 HG03098.hp1 others(3): Show HG02723.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03540.hp1 HG03579.hp2	intron_variant	MODIFIER	c.769-588G>A c.769-588G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125595
chr17:40125881	T T	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	3	HG01884.hp1 HG02615.hp1 NA19043.hp2 HG01884.hp1 HG02615.hp1 NA19043.hp2	intron_variant	MODIFIER	c.769-302T>C c.769-302T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125881
chr17:40125982	C C	T T	3	a0001c0002t0003g0018 a0001c0002t0003g0054 a0001c0002t0017g0055 a0001c0002t0003g0018 a0001c0002t0003g0054 a0001c0002t0017g0055	5	HG02723.hp1 HG02976.hp1 HG03098.hp1 others(2): Show HG02723.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03540.hp1	intron_variant	MODIFIER	c.769-201C>T c.769-201C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125982
chr17:40125990	T T	A A	1	a0001c0002t0011g0023 a0001c0002t0011g0023	2	HG01081.hp1 NA20129.hp2 HG01081.hp1 NA20129.hp2	intron_variant	MODIFIER	c.769-193T>A c.769-193T>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40125990
chr17:40126103	C C	T T	1	a0001c0002t0011g0023 a0001c0002t0011g0023	2	HG01081.hp1 NA20129.hp2 HG01081.hp1 NA20129.hp2	intron_variant	MODIFIER	c.769-80C>T c.769-80C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40126103
chr17:40126124	G G	A A	1	a0001c0002t0003g0022 a0001c0002t0003g0022	2	HG03225.hp2 NA19030.hp1 HG03225.hp2 NA19030.hp1	intron_variant	MODIFIER	c.769-59G>A c.769-59G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40126124
chr17:40126126	A A	G G	2	a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0050 a0001c0001t0001g0051	2	HG01981.hp1 homoSapiens_chm13v2.hp1 HG01981.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.769-57A>G c.769-57A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	1/8		chr17	40126126
chr17:40126417	A A	G G	2	a0001c0007t0013g0061 a0001c0007t0013g0062 a0001c0007t0013g0061 a0001c0007t0013g0062	2	HG00099.hp1 HG02148.hp2 HG00099.hp1 HG02148.hp2	intron_variant	MODIFIER	c.992+11A>G c.992+11A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40126417
chr17:40126527	G G	A A	1	a0001c0002t0015g0060 a0001c0002t0015g0060	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.992+121G>A c.992+121G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40126527
chr17:40126625	T T	G G	16	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(13): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0007t0013g0061 a0001c0007t0013g0062	22	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(19): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02280.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.992+219T>G c.992+219T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40126625
chr17:40126626	T T	G G	16	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(13): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0007t0013g0061 a0001c0007t0013g0062	22	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(19): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02280.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.992+220T>G c.992+220T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40126626
chr17:40126804	C C	CA CA	19	a0001c0001t0001g0010 a0001c0002t0003g0018 a0001c0002t0003g0022 others(16): Show a0001c0001t0001g0010 a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0003t0005g0010 a0001c0007t0013g0061 a0001c0007t0013g0062	29	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(26): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02818.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG06807.hp2 NA18963.hp2 NA18990.hp2 NA19030.hp1 NA20129.hp2	intron_variant	MODIFIER	c.992+414dupA c.992+414dupA	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8	INFO_REALIGN_3_PRIME	chr17	40126804
chr17:40126874	A A	G G	1	a0001c0001t0025g0049 a0001c0001t0025g0049	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.992+468A>G c.992+468A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40126874
chr17:40126946	T T	C C	18	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(15): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0007t0013g0061 a0001c0007t0013g0062	26	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(23): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.992+540T>C c.992+540T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40126946
chr17:40127097	C C	T T	1	a0001c0004t0001g0048 a0001c0004t0001g0048	1	HG02148.hp1 HG02148.hp1	intron_variant	MODIFIER	c.992+691C>T c.992+691C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40127097
chr17:40127120	C C	T T	4	a0001c0004t0001g0009 a0001c0004t0007g0009 a0001c0004t0007g0025 others(1): Show a0001c0004t0001g0009 a0001c0004t0007g0009 a0001c0004t0007g0025 a0001c0004t0007g0047	7	HG00140.hp1 HG00639.hp1 HG00642.hp1 others(4): Show HG00140.hp1 HG00639.hp1 HG00642.hp1 HG01256.hp2 HG01433.hp1 HG01952.hp2 NA20752.hp1	intron_variant	MODIFIER	c.992+714C>T c.992+714C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40127120
chr17:40127254	C C	T T	11	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(8): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0011g0023 a0001c0002t0017g0055	15	HG01081.hp1 HG01109.hp2 HG02109.hp1 others(12): Show HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03540.hp1 HG03579.hp2 NA19030.hp1 NA20129.hp2	intron_variant	MODIFIER	c.992+848C>T c.992+848C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40127254
chr17:40127320	G G	A A	1	a0001c0001t0019g0029 a0001c0001t0019g0029	1	HG02155.hp2 HG02155.hp2	intron_variant	MODIFIER	c.992+914G>A c.992+914G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40127320
chr17:40127339	G G	GA GA	7	a0001c0001t0001g0013 a0001c0001t0002g0013 a0001c0001t0025g0049 others(4): Show a0001c0001t0001g0013 a0001c0001t0002g0013 a0001c0001t0025g0049 a0001c0002t0003g0018 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0017g0055	10	HG02280.hp1 HG02723.hp1 HG02976.hp1 others(7): Show HG02280.hp1 HG02723.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03540.hp1 HG03579.hp2 NA18978.hp1 NA19000.hp2 NA20300.hp1	intron_variant	MODIFIER	c.992+950dupA c.992+950dupA	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8	INFO_REALIGN_3_PRIME	chr17	40127339
chr17:40127339	GA GA	G G	32	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0015 others(29): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0004g0002 a0001c0001t0004g0015 a0001c0001t0005g0003 a0001c0001t0005g0024 a0001c0001t0006g0045 a0001c0001t0019g0029 a0001c0001t0024g0002 a0001c0001t0026g0002 a0001c0004t0001g0003 a0001c0004t0001g0009 a0001c0004t0001g0048 a0001c0004t0007g0009 a0001c0004t0007g0025 a0001c0004t0007g0047 a0001c0005t0001g0002 a0001c0005t0001g0019 a0001c0006t0001g0003 a0001c0006t0001g0016 a0003c0008t0001g0003	126	HG00099.hp2 HG00140.hp1 HG00280.hp2 others(123): Show HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00741.hp2 HG01106.hp2 HG01123.hp1 HG01123.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp2 HG01256.hp2 HG01261.hp1 HG01346.hp2 HG01358.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp2 HG01943.hp2 HG01952.hp2 HG02015.hp1 HG02040.hp1 HG02055.hp2 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp1 HG02148.hp1 HG02155.hp2 HG02273.hp1 HG02559.hp1 HG02559.hp2 HG02622.hp2 HG02647.hp2 HG02717.hp1 HG02735.hp2 HG02809.hp1 HG02818.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03130.hp1 HG03209.hp2 HG03491.hp2 HG03492.hp2 HG03579.hp1 HG03834.hp1 HG03927.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp2 NA18941.hp1 NA18944.hp1 NA18947.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp2 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18963.hp1 NA18964.hp1 NA18965.hp2 NA18966.hp1 NA18969.hp1 NA18971.hp2 NA18972.hp1 NA18974.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18993.hp2 NA18995.hp1 NA18997.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19010.hp1 NA19011.hp1 NA19056.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp2 NA19067.hp2 NA19070.hp1 NA19074.hp2 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19082.hp2 NA19084.hp2 NA19085.hp1 NA19087.hp2 NA19088.hp1 NA19240.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2	intron_variant	MODIFIER	c.992+950delA c.992+950delA	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8	INFO_REALIGN_3_PRIME	chr17	40127339
chr17:40127530	G G	A A	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.992+1124G>A c.992+1124G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40127530
chr17:40127655	G G	C C	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA18999.hp1 NA18999.hp1	intron_variant	MODIFIER	c.992+1249G>C c.992+1249G>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40127655
chr17:40127833	AAAG AAAG	A A	1	a0001c0006t0001g0016 a0001c0006t0001g0016	3	NA18957.hp2 NA18983.hp1 NA19074.hp2 NA18957.hp2 NA18983.hp1 NA19074.hp2	intron_variant	MODIFIER	c.993-1408_993-1406d others(5): Show c.993-1408_993-1406delAAG	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8	INFO_REALIGN_3_PRIME	chr17	40127833
chr17:40127862	C C	T T	1	a0001c0002t0008g0011 a0001c0002t0008g0011	3	HG02257.hp1 HG02258.hp2 HG02486.hp2 HG02257.hp1 HG02258.hp2 HG02486.hp2	intron_variant	MODIFIER	c.993-1383C>T c.993-1383C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40127862
chr17:40128133	T T	G G	10	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(7): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0017g0055	13	HG01109.hp2 HG02109.hp1 HG02572.hp1 others(10): Show HG01109.hp2 HG02109.hp1 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03540.hp1 HG03579.hp2 NA19030.hp1	intron_variant	MODIFIER	c.993-1112T>G c.993-1112T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128133
chr17:40128369	C C	CT CT	7	a0001c0001t0001g0008 a0001c0001t0001g0012 a0001c0001t0001g0015 others(4): Show a0001c0001t0001g0008 a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0030 a0001c0001t0001g0046 a0001c0001t0004g0015 a0001c0011t0028g0008	13	HG01358.hp1 HG01884.hp1 HG01891.hp2 others(10): Show HG01358.hp1 HG01884.hp1 HG01891.hp2 HG02615.hp1 NA18948.hp1 NA18949.hp1 NA18977.hp2 NA18979.hp2 NA18985.hp1 NA19000.hp1 NA19043.hp2 NA19090.hp1 NA19090.hp2	intron_variant	MODIFIER	c.993-855dupT c.993-855dupT	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8	INFO_REALIGN_3_PRIME	chr17	40128369
chr17:40128369	C C	CTTTTTT CTTTTTT	5	a0001c0002t0003g0018 a0001c0002t0003g0053 a0001c0002t0011g0023 others(2): Show a0001c0002t0003g0018 a0001c0002t0003g0053 a0001c0002t0011g0023 a0001c0002t0017g0055 a0001c0002t0018g0052	8	HG01081.hp1 HG02976.hp1 HG03098.hp1 others(5): Show HG01081.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 NA20129.hp2	intron_variant	MODIFIER	c.993-860_993-855dup others(6): Show c.993-860_993-855dupTTTTTT	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8	INFO_REALIGN_3_PRIME	chr17	40128369
chr17:40128369	CT CT	C C	10	a0001c0001t0001g0006 a0001c0001t0001g0019 a0001c0001t0001g0032 others(7): Show a0001c0001t0001g0006 a0001c0001t0001g0019 a0001c0001t0001g0032 a0001c0001t0001g0064 a0001c0001t0001g0066 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0003t0001g0006 a0001c0005t0001g0019	17	HG01168.hp2 HG01515.hp1 HG01515.hp2 others(14): Show HG01168.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02922.hp2 HG06807.hp2 NA18939.hp2 NA18960.hp1 NA18982.hp1 NA18986.hp1 NA18986.hp2 NA19070.hp2	intron_variant	MODIFIER	c.993-855delT c.993-855delT	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8	INFO_REALIGN_3_PRIME	chr17	40128369
chr17:40128414	G G	A A	1	a0001c0001t0001g0041 a0001c0001t0001g0041	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.993-831G>A c.993-831G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128414
chr17:40128482	C C	A A	1	a0001c0004t0007g0047 a0001c0004t0007g0047	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.993-763C>A c.993-763C>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128482
chr17:40128549	A A	G G	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.993-696A>G c.993-696A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128549
chr17:40128610	G G	C C	30	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0015 others(27): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0004g0002 a0001c0001t0004g0015 a0001c0001t0005g0003 a0001c0001t0005g0024 a0001c0001t0019g0029 a0001c0001t0024g0002 a0001c0001t0026g0002 a0001c0004t0001g0003 a0001c0004t0001g0009 a0001c0004t0001g0048 a0001c0004t0007g0009 a0001c0004t0007g0025 a0001c0004t0007g0047 a0001c0005t0001g0002 a0001c0005t0001g0019 a0001c0006t0001g0003 a0001c0006t0001g0016 a0003c0008t0001g0003	123	HG00099.hp2 HG00140.hp1 HG00280.hp2 others(120): Show HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00741.hp2 HG01106.hp2 HG01123.hp1 HG01123.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp2 HG01256.hp2 HG01261.hp1 HG01346.hp2 HG01358.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp2 HG01943.hp2 HG01952.hp2 HG02015.hp1 HG02055.hp2 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp1 HG02148.hp1 HG02155.hp2 HG02273.hp1 HG02559.hp1 HG02559.hp2 HG02622.hp2 HG02647.hp2 HG02717.hp1 HG02735.hp2 HG02809.hp1 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03130.hp1 HG03209.hp2 HG03491.hp2 HG03492.hp2 HG03579.hp1 HG03834.hp1 HG03927.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp2 NA18941.hp1 NA18944.hp1 NA18947.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp2 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18963.hp1 NA18964.hp1 NA18965.hp2 NA18966.hp1 NA18969.hp1 NA18971.hp2 NA18972.hp1 NA18974.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18993.hp2 NA18995.hp1 NA18997.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19010.hp1 NA19011.hp1 NA19056.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp2 NA19067.hp2 NA19070.hp1 NA19074.hp2 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19082.hp2 NA19084.hp2 NA19085.hp1 NA19087.hp2 NA19088.hp1 NA19240.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2	intron_variant	MODIFIER	c.993-635G>C c.993-635G>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128610
chr17:40128713	T T	A A	1	a0001c0002t0017g0055 a0001c0002t0017g0055	1	HG03540.hp1 HG03540.hp1	intron_variant	MODIFIER	c.993-532T>A c.993-532T>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128713
chr17:40128751	C C	T T	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	NA18957.hp1 NA18957.hp1	intron_variant	MODIFIER	c.993-494C>T c.993-494C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128751
chr17:40128961	C C	T T	13	a0001c0001t0001g0002 a0001c0001t0001g0015 a0001c0001t0001g0019 others(10): Show a0001c0001t0001g0002 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0004g0002 a0001c0001t0004g0015 a0001c0001t0005g0024 a0001c0001t0019g0029 a0001c0001t0024g0002 a0001c0001t0026g0002 a0001c0005t0001g0002 a0001c0005t0001g0019	65	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(62): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp2 HG00621.hp2 HG00673.hp1 HG00673.hp2 HG01106.hp2 HG01123.hp2 HG01255.hp2 HG01358.hp2 HG01496.hp1 HG01934.hp2 HG02080.hp2 HG02083.hp1 HG02132.hp2 HG02155.hp2 HG02273.hp1 NA18747.hp1 NA18940.hp2 NA18941.hp1 NA18947.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp2 NA18960.hp1 NA18961.hp1 NA18963.hp1 NA18964.hp1 NA18965.hp2 NA18966.hp1 NA18969.hp1 NA18972.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp2 NA18983.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18993.hp2 NA18995.hp1 NA18997.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19010.hp1 NA19011.hp1 NA19056.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp2 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19082.hp2 NA19084.hp2 NA19085.hp1 NA19087.hp2	intron_variant	MODIFIER	c.993-284C>T c.993-284C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40128961
chr17:40129166	T T	C C	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	NA18997.hp2 NA18997.hp2	intron_variant	MODIFIER	c.993-79T>C c.993-79T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	2/8		chr17	40129166
chr17:40130001	T T	C C	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG03017.hp2 HG03017.hp2	intron_variant	MODIFIER	c.1375+374T>C c.1375+374T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130001
chr17:40130265	C C	G G	1	a0001c0002t0003g0059 a0001c0002t0003g0059	1	HG02109.hp1 HG02109.hp1	intron_variant	MODIFIER	c.1375+638C>G c.1375+638C>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130265
chr17:40130686	C C	G G	1	a0001c0001t0001g0064 a0001c0001t0001g0064	1	HG01168.hp2 HG01168.hp2	intron_variant	MODIFIER	c.1376-851C>G c.1376-851C>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130686
chr17:40130733	C C	A A	1	a0001c0001t0006g0034 a0001c0001t0006g0034	1	HG00735.hp2 HG00735.hp2	intron_variant	MODIFIER	c.1376-804C>A c.1376-804C>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130733
chr17:40130817	G G	C C	3	a0001c0001t0001g0014 a0001c0001t0001g0032 a0001c0001t0023g0014 a0001c0001t0001g0014 a0001c0001t0001g0032 a0001c0001t0023g0014	4	HG01515.hp1 HG01516.hp2 HG01517.hp1 others(1): Show HG01515.hp1 HG01516.hp2 HG01517.hp1 HG03831.hp2	intron_variant	MODIFIER	c.1376-720G>C c.1376-720G>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130817
chr17:40130835	C C	T T	13	a0001c0001t0001g0002 a0001c0001t0001g0015 a0001c0001t0001g0019 others(10): Show a0001c0001t0001g0002 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0004g0002 a0001c0001t0004g0015 a0001c0001t0005g0024 a0001c0001t0019g0029 a0001c0001t0024g0002 a0001c0001t0026g0002 a0001c0005t0001g0002 a0001c0005t0001g0019	65	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(62): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp2 HG00621.hp2 HG00673.hp1 HG00673.hp2 HG01106.hp2 HG01123.hp2 HG01255.hp2 HG01358.hp2 HG01496.hp1 HG01934.hp2 HG02080.hp2 HG02083.hp1 HG02132.hp2 HG02155.hp2 HG02273.hp1 NA18747.hp1 NA18940.hp2 NA18941.hp1 NA18947.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp2 NA18960.hp1 NA18961.hp1 NA18963.hp1 NA18964.hp1 NA18965.hp2 NA18966.hp1 NA18969.hp1 NA18972.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp2 NA18983.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18993.hp2 NA18995.hp1 NA18997.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19010.hp1 NA19011.hp1 NA19056.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp2 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19082.hp2 NA19084.hp2 NA19085.hp1 NA19087.hp2	intron_variant	MODIFIER	c.1376-702C>T c.1376-702C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130835
chr17:40130842	C C	T T	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1376-695C>T c.1376-695C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130842
chr17:40130852	T T	C C	1	a0001c0002t0003g0056 a0001c0002t0003g0056	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.1376-685T>C c.1376-685T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130852
chr17:40130978	G G	A A	2	a0001c0001t0001g0007 a0001c0001t0021g0007 a0001c0001t0001g0007 a0001c0001t0021g0007	5	HG02027.hp1 NA18943.hp2 NA18968.hp1 others(2): Show HG02027.hp1 NA18943.hp2 NA18968.hp1 NA18980.hp2 NA19081.hp1	intron_variant	MODIFIER	c.1376-559G>A c.1376-559G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130978
chr17:40130984	T T	C C	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.1376-553T>C c.1376-553T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40130984
chr17:40131121	C C	T T	1	a0001c0001t0001g0065 a0001c0001t0001g0065	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.1376-416C>T c.1376-416C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40131121
chr17:40131371	C C	G G	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	HG01516.hp1 HG01516.hp1	intron_variant	MODIFIER	c.1376-166C>G c.1376-166C>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	3/8		chr17	40131371
chr17:40131631	G G	T T	2	a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0050 a0001c0001t0001g0051	2	HG01981.hp1 homoSapiens_chm13v2.hp1 HG01981.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1423+47G>T c.1423+47G>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	4/8		chr17	40131631
chr17:40131860	C C	T T	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	NA19067.hp2 NA19067.hp2	intron_variant	MODIFIER	c.1424-174C>T c.1424-174C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	4/8		chr17	40131860
chr17:40132145	G G	C C	1	a0001c0002t0003g0057 a0001c0002t0003g0057	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.1488+47G>C c.1488+47G>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132145
chr17:40132392	C C	T T	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	NA18979.hp1 NA18979.hp1	intron_variant	MODIFIER	c.1488+294C>T c.1488+294C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132392
chr17:40132433	T T	A A	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	HG02040.hp2 HG02040.hp2	intron_variant	MODIFIER	c.1488+335T>A c.1488+335T>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132433
chr17:40132453	T T	G G	1	a0001c0001t0001g0020 a0001c0001t0001g0020	2	HG03491.hp2 HG03492.hp2 HG03491.hp2 HG03492.hp2	intron_variant	MODIFIER	c.1488+355T>G c.1488+355T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132453
chr17:40132503	T T	C C	2	a0001c0007t0013g0061 a0001c0007t0013g0062 a0001c0007t0013g0061 a0001c0007t0013g0062	2	HG00099.hp1 HG02148.hp2 HG00099.hp1 HG02148.hp2	intron_variant	MODIFIER	c.1488+405T>C c.1488+405T>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132503
chr17:40132594	G G	A A	1	a0001c0001t0005g0036 a0001c0001t0005g0036	1	HG03654.hp2 HG03654.hp2	intron_variant	MODIFIER	c.1489-448G>A c.1489-448G>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132594
chr17:40132646	A A	C C	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.1489-396A>C c.1489-396A>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132646
chr17:40132670	A A	C C	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.1489-372A>C c.1489-372A>C	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132670
chr17:40132673	A A	T T	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.1489-369A>T c.1489-369A>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132673
chr17:40132750	A A	G G	56	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(53): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0004g0002 a0001c0001t0004g0015 a0001c0001t0005g0003 a0001c0001t0005g0024 a0001c0001t0006g0004 a0001c0001t0006g0034 a0001c0001t0006g0045 a0001c0001t0014g0004 a0001c0001t0016g0004 a0001c0001t0019g0029 a0001c0001t0024g0002 a0001c0001t0025g0049 a0001c0001t0026g0002 a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0004t0001g0003 a0001c0004t0001g0009 a0001c0004t0001g0048 a0001c0004t0007g0009 a0001c0004t0007g0025 a0001c0004t0007g0047 a0001c0005t0001g0002 a0001c0005t0001g0019 a0001c0006t0001g0003 a0001c0006t0001g0016 a0001c0007t0013g0061 a0001c0007t0013g0062 a0003c0008t0001g0003	169	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(166): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00735.hp2 HG00741.hp2 HG01081.hp1 HG01106.hp2 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp2 HG01256.hp2 HG01261.hp1 HG01346.hp2 HG01358.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp2 HG01943.hp2 HG01952.hp2 HG02015.hp1 HG02055.hp2 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp2 HG02257.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02647.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02735.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03491.hp2 HG03492.hp2 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03834.hp1 HG03927.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp2 NA18941.hp1 NA18944.hp1 NA18947.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp2 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18963.hp1 NA18964.hp1 NA18965.hp2 NA18966.hp1 NA18969.hp1 NA18971.hp2 NA18972.hp1 NA18974.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18993.hp2 NA18995.hp1 NA18997.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19010.hp1 NA19011.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp2 NA19067.hp2 NA19070.hp1 NA19074.hp2 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19082.hp2 NA19084.hp2 NA19085.hp1 NA19087.hp2 NA19088.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1489-292A>G c.1489-292A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132750
chr17:40132758	T T	A A	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.1489-284T>A c.1489-284T>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132758
chr17:40132808	A A	T T	18	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(15): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0007t0013g0061 a0001c0007t0013g0062	26	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(23): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1489-234A>T c.1489-234A>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132808
chr17:40132944	GAAAGATT others(6): Show GAAAGATTTTACGT	G G	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	NA18954.hp1 NA18954.hp1	intron_variant	MODIFIER	c.1489-97_1489-85del others(13): Show c.1489-97_1489-85delAAAGATTTTACGT	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	5/8		chr17	40132944
chr17:40133166	T T	G G	18	a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 others(15): Show a0001c0002t0003g0018 a0001c0002t0003g0022 a0001c0002t0003g0053 a0001c0002t0003g0054 a0001c0002t0003g0056 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0059 a0001c0002t0003g0063 a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0009g0017 a0001c0002t0011g0023 a0001c0002t0015g0060 a0001c0002t0017g0055 a0001c0002t0018g0052 a0001c0007t0013g0061 a0001c0007t0013g0062	26	HG00099.hp1 HG01081.hp1 HG01109.hp2 others(23): Show HG00099.hp1 HG01081.hp1 HG01109.hp2 HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02723.hp1 HG02886.hp2 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03225.hp2 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1556+57T>G c.1556+57T>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	6/8		chr17	40133166
chr17:40133187	T T	A A	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.1556+78T>A c.1556+78T>A	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	6/8		chr17	40133187
chr17:40133361	C C	T T	2	a0001c0007t0013g0061 a0001c0007t0013g0062 a0001c0007t0013g0061 a0001c0007t0013g0062	2	HG00099.hp1 HG02148.hp2 HG00099.hp1 HG02148.hp2	intron_variant	MODIFIER	c.1557-173C>T c.1557-173C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	6/8		chr17	40133361
chr17:40133697	A A	G G	2	a0001c0002t0008g0011 a0001c0002t0008g0026 a0001c0002t0008g0011 a0001c0002t0008g0026	4	HG02257.hp1 HG02258.hp2 HG02486.hp1 others(1): Show HG02257.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2	intron_variant	MODIFIER	c.1681+39A>G c.1681+39A>G	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	7/8		chr17	40133697
chr17:40133769	C C	T T	2	a0001c0007t0013g0061 a0001c0007t0013g0062 a0001c0007t0013g0061 a0001c0007t0013g0062	2	HG00099.hp1 HG02148.hp2 HG00099.hp1 HG02148.hp2	intron_variant	MODIFIER	c.1682-58C>T c.1682-58C>T	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding	7/8		chr17	40133769

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JoGo Online Haplotype Explorer MSL1_chr17_40116971_40141917

JoGo Local Haplotype Explorer (on iGV) MSL1_chr17_40116971_40141917

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 3)

CCoding Level Haplotype Info (Total: 12)

TTranscript Level Haplotype Info (Total: 29)

GGenebody Level Haplotype Info (Total: 67)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 12)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 38)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 101)

Haplotype Details by Sample (Haploid Level) (Total: 356)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 14)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 10)

TTranscript Level Haplotype Variants (Exon) (Total: 30)

GGenebody Level Haplotype Variants (Intron) (Total: 85)

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Annotation (Repeats)

Annotation (SNP Array)