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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

  Error connecting to IGV?   LHX5_chr12_113457033_113476871  LHX5_chr12_113457033_113476871 (clean+top1000)

Multiple Alignments (by translate haplotype frequency)Multiple Alignments (by aa haplotype frequency) Multiple Alignments (by translate haplotype similarity)Multiple Alignments (by aa haplotype similarity)

Item Value
geneid 64211
ensemblid ENSG00000089116.4
hgncid 14216
symbol LHX5
name LIM homeobox 5
refseq_nuc NM_022363.3
refseq_prot NP_071758.1
ensembl_nuc ENST00000261731.4
ensembl_prot ENSP00000261731.2
mane_status MANE Select
chr chr12
start 113462033
end 113471871
strand -
ver v1.2
region chr12:113462033-113471871
region5000 chr12:113457033-113476871
regionname0 LHX5_chr12_113462033_113471871
regionname5000 LHX5_chr12_113457033_113476871

ahapid grch38/
chm13v2 		alen total AFR AMR EAS EUR SAS JPT regionname genename aa chr start end
a0001 1/1 402 396 88 76 172 16 42 130 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871

chapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
c0001 1/1 1209 390 87 76 171 15 39 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
c0002 0/0 1209 3 0 0 1 1 1 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
c0003 0/0 1209 2 0 0 0 0 2 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
c0004 0/0 1209 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871

thapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
t0001 1/1 1531 326 58 57 158 14 37 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0002 0/0 1532 20 0 11 6 1 2 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0003 0/0 1532 15 14 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0004 0/0 1531 11 2 1 4 1 3 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0005 0/0 1531 8 7 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0006 0/0 1531 3 0 3 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0007 0/0 1531 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0008 0/0 1532 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0009 0/0 1531 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0010 0/0 1531 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0011 0/0 1531 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0012 0/0 1531 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0013 0/0 1531 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0014 0/0 1531 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0015 0/0 1532 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0016 0/0 1531 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
t0017 0/0 1531 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871

ghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
g0001 0/0 83 22 10 40 3 8 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0002 1/0 82 3 21 43 5 9 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0003 0/0 66 1 4 49 4 8 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0004 0/0 15 0 11 4 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0005 0/1 14 3 4 0 0 6 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0006 0/0 14 0 13 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0007 0/0 11 11 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0008 0/0 9 7 2 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0009 0/0 8 0 0 8 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0010 0/0 6 0 0 2 1 3 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0011 0/0 5 0 0 4 0 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0012 0/0 4 4 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0013 0/0 3 0 3 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0014 0/0 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0015 0/0 3 0 0 3 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0016 0/0 3 0 0 1 1 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0017 0/0 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0018 0/0 3 2 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0019 0/0 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0020 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0021 0/0 2 0 0 0 0 2 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0022 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0023 0/0 2 2 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0024 0/0 2 0 2 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0025 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0026 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0027 0/0 2 1 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0028 0/0 2 0 0 0 0 2 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0029 0/0 2 2 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0030 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0031 0/0 1 0 0 0 1 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0032 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0033 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0034 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0035 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0036 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0037 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0038 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0039 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0040 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0041 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0042 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0043 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0044 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0045 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0046 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0047 0/0 1 0 0 0 0 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0048 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0049 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0050 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0051 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0052 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0053 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0054 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0055 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0056 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0057 0/0 1 0 0 0 1 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0058 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0059 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0060 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0061 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0062 0/0 1 0 0 0 0 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0063 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0064 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0065 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0066 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
g0067 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871

achapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
a0001c0001 1/1 1209 390 87 76 171 15 39 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0002 0/0 1209 3 0 0 1 1 1 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0003 0/0 1209 2 0 0 0 0 2 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0004 0/0 1209 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871

acthapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
a0001c0001t0001 1/1 2739 321 58 57 157 13 34 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0002 0/0 2740 20 0 11 6 1 2 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0003 0/0 2740 15 14 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0004 0/0 2739 11 2 1 4 1 3 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0005 0/0 2739 8 7 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0006 0/0 2739 3 0 3 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0007 0/0 2739 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0008 0/0 2740 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0009 0/0 2739 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0011 0/0 2739 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0012 0/0 2739 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0013 0/0 2739 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0014 0/0 2739 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0015 0/0 2740 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0016 0/0 2739 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0001t0017 0/0 2739 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0002t0001 0/0 2739 3 0 0 1 1 1 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0003t0001 0/0 2739 2 0 0 0 0 2 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871
a0001c0004t0010 0/0 2739 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 copy fasta chr12 113457033 113476871

actghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
a0001c0001t0001g0001 0/0 83 22 10 40 3 8 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0002 1/0 82 3 21 43 5 9 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0003 0/0 66 1 4 49 4 8 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0005 0/1 14 3 4 0 0 6 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0006 0/0 14 0 13 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0008 0/0 9 7 2 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0009 0/0 8 0 0 8 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0011 0/0 5 0 0 4 0 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0012 0/0 4 4 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0014 0/0 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0015 0/0 3 0 0 3 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0023 0/0 2 2 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0024 0/0 2 0 2 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0025 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0026 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0038 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0040 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0041 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0042 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0043 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0044 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0045 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0046 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0047 0/0 1 0 0 0 0 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0048 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0050 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0051 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0052 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0054 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0055 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0056 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0057 0/0 1 0 0 0 1 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0058 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0061 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0062 0/0 1 0 0 0 0 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0064 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0001g0065 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0002g0004 0/0 15 0 11 4 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0002g0020 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0002g0021 0/0 2 0 0 0 0 2 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0002g0031 0/0 1 0 0 0 1 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0003g0007 0/0 11 11 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0003g0018 0/0 3 2 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0003g0053 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0004g0010 0/0 6 0 0 2 1 3 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0004g0022 0/0 2 0 0 2 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0004g0036 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0004g0037 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0004g0039 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0005g0019 0/0 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0005g0027 0/0 2 1 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0005g0029 0/0 2 2 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0005g0063 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0006g0013 0/0 3 0 3 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0007g0017 0/0 3 3 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0008g0030 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0009g0032 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0011g0034 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0012g0035 0/0 1 0 1 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0013g0059 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0014g0060 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0015g0049 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0016g0066 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0001t0017g0067 0/0 1 0 0 1 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0002t0001g0016 0/0 3 0 0 1 1 1 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0003t0001g0028 0/0 2 0 0 0 0 2 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
a0001c0004t0010g0033 0/0 1 1 0 0 0 0 LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871

sampleid ID
haplotypeid
 ahapid chapid thapid ghapid gpopname popname regionname genename chr start end
HG00099 hp1 a0001 c0001 t0001 g0003 EUR GBR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00099 hp2 a0001 c0002 t0001 g0016 EUR GBR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00140 hp1 a0001 c0001 t0001 g0001 EUR GBR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00140 hp2 a0001 c0001 t0001 g0002 EUR GBR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00280 hp1 a0001 c0001 t0001 g0001 EUR FIN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00280 hp2 a0001 c0001 t0001 g0003 EUR FIN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00323 hp1 a0001 c0001 t0001 g0001 EUR FIN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00323 hp2 a0001 c0001 t0001 g0002 EUR FIN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00408 hp1 a0001 c0001 t0001 g0011 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00408 hp2 a0001 c0001 t0001 g0003 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00438 hp1 a0001 c0001 t0001 g0011 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00438 hp2 a0001 c0001 t0001 g0001 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00544 hp1 a0001 c0001 t0001 g0003 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00544 hp2 a0001 c0001 t0001 g0001 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00597 hp1 a0001 c0001 t0001 g0001 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00597 hp2 a0001 c0001 t0001 g0003 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00609 hp1 a0001 c0001 t0001 g0003 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00609 hp2 a0001 c0001 t0001 g0003 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00621 hp1 a0001 c0001 t0001 g0003 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00621 hp2 a0001 c0001 t0001 g0001 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00642 hp1 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00642 hp2 a0001 c0001 t0001 g0001 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00673 hp1 a0001 c0001 t0001 g0009 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00673 hp2 a0001 c0001 t0001 g0003 EAS CHS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00733 hp1 a0001 c0001 t0001 g0024 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00733 hp2 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00735 hp1 a0001 c0001 t0002 g0004 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00735 hp2 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00738 hp1 a0001 c0001 t0001 g0003 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00738 hp2 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00741 hp1 a0001 c0001 t0001 g0024 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG00741 hp2 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01069 hp1 a0001 c0001 t0001 g0001 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01069 hp2 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01070 hp1 a0001 c0001 t0002 g0004 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01070 hp2 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01071 hp1 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01071 hp2 a0001 c0001 t0001 g0001 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01074 hp1 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01074 hp2 a0001 c0001 t0012 g0035 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01081 hp1 a0001 c0001 t0001 g0005 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01081 hp2 a0001 c0001 t0001 g0006 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01099 hp1 a0001 c0001 t0001 g0001 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01099 hp2 a0001 c0001 t0001 g0003 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01109 hp1 a0001 c0001 t0005 g0027 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01109 hp2 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01167 hp1 a0001 c0001 t0002 g0004 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01167 hp2 a0001 c0001 t0001 g0001 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01168 hp1 a0001 c0001 t0001 g0008 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01168 hp2 a0001 c0001 t0002 g0004 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01169 hp1 a0001 c0001 t0002 g0004 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01169 hp2 a0001 c0001 t0001 g0008 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01192 hp1 a0001 c0001 t0001 g0003 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01192 hp2 a0001 c0001 t0001 g0006 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01243 hp1 a0001 c0001 t0001 g0002 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01243 hp2 a0001 c0001 t0001 g0001 AMR PUR LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01256 hp1 a0001 c0001 t0003 g0018 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01256 hp2 a0001 c0001 t0001 g0006 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01257 hp1 a0001 c0001 t0006 g0013 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01257 hp2 a0001 c0001 t0001 g0002 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01258 hp1 a0001 c0001 t0006 g0013 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01258 hp2 a0001 c0001 t0001 g0006 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01261 hp1 a0001 c0001 t0001 g0002 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01261 hp2 a0001 c0001 t0001 g0003 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01346 hp1 a0001 c0001 t0006 g0013 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01346 hp2 a0001 c0001 t0001 g0005 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01358 hp1 a0001 c0001 t0001 g0002 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01358 hp2 a0001 c0001 t0001 g0005 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01361 hp1 a0001 c0001 t0002 g0004 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01361 hp2 a0001 c0001 t0001 g0002 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01433 hp1 a0001 c0001 t0001 g0002 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01433 hp2 a0001 c0001 t0001 g0001 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01515 hp1 a0001 c0001 t0002 g0031 EUR IBS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01515 hp2 a0001 c0001 t0001 g0003 EUR IBS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01517 hp1 a0001 c0001 t0001 g0002 EUR IBS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01517 hp2 a0001 c0001 t0001 g0003 EUR IBS LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01884 hp1 a0001 c0001 t0003 g0007 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01884 hp2 a0001 c0001 t0001 g0008 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01891 hp1 a0001 c0001 t0001 g0046 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01891 hp2 a0001 c0001 t0007 g0017 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01928 hp1 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01928 hp2 a0001 c0001 t0001 g0002 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01934 hp1 a0001 c0001 t0001 g0054 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01934 hp2 a0001 c0001 t0002 g0004 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01943 hp1 a0001 c0001 t0001 g0005 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01943 hp2 a0001 c0001 t0001 g0002 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01952 hp1 a0001 c0001 t0001 g0002 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01952 hp2 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01975 hp1 a0001 c0001 t0001 g0002 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01975 hp2 a0001 c0001 t0002 g0004 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01978 hp1 a0001 c0001 t0001 g0001 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01978 hp2 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01981 hp1 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01981 hp2 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01993 hp1 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01993 hp2 a0001 c0001 t0004 g0036 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02004 hp1 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02004 hp2 a0001 c0001 t0001 g0001 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02015 hp1 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02015 hp2 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02027 hp1 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02027 hp2 a0001 c0001 t0001 g0002 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02040 hp1 a0001 c0001 t0001 g0003 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02040 hp2 a0001 c0001 t0001 g0003 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02056 hp1 a0001 c0001 t0001 g0002 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02056 hp2 a0001 c0001 t0001 g0011 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02074 hp1 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02074 hp2 a0001 c0001 t0001 g0003 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02080 hp1 a0001 c0001 t0001 g0002 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02080 hp2 a0001 c0001 t0009 g0032 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02083 hp1 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02083 hp2 a0001 c0001 t0001 g0042 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02129 hp1 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02129 hp2 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02132 hp1 a0001 c0001 t0002 g0020 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02132 hp2 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02135 hp1 a0001 c0001 t0001 g0001 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02135 hp2 a0001 c0001 t0001 g0003 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02145 hp1 a0001 c0001 t0001 g0001 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02145 hp2 a0001 c0001 t0001 g0003 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02148 hp1 a0001 c0001 t0011 g0034 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02148 hp2 a0001 c0001 t0002 g0004 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02155 hp1 a0001 c0001 t0001 g0003 EAS CDX LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02155 hp2 a0001 c0001 t0001 g0061 EAS CDX LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02165 hp1 a0001 c0001 t0001 g0003 EAS CDX LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02165 hp2 a0001 c0001 t0001 g0002 EAS CDX LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02257 hp1 a0001 c0001 t0001 g0055 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02257 hp2 a0001 c0001 t0001 g0001 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02258 hp1 a0001 c0001 t0004 g0037 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02258 hp2 a0001 c0001 t0001 g0005 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02280 hp1 a0001 c0001 t0001 g0008 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02280 hp2 a0001 c0001 t0001 g0001 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02293 hp1 a0001 c0001 t0001 g0001 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02293 hp2 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02300 hp1 a0001 c0001 t0002 g0004 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02300 hp2 a0001 c0001 t0001 g0006 AMR PEL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02451 hp1 a0001 c0001 t0001 g0001 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02451 hp2 a0001 c0001 t0001 g0001 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02523 hp1 a0001 c0001 t0001 g0011 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02523 hp2 a0001 c0001 t0001 g0009 EAS KHV LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02572 hp1 a0001 c0001 t0003 g0007 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02572 hp2 a0001 c0001 t0003 g0007 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02602 hp1 a0001 c0001 t0001 g0005 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02602 hp2 a0001 c0001 t0001 g0002 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02615 hp1 a0001 c0001 t0001 g0051 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02615 hp2 a0001 c0001 t0003 g0007 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02622 hp1 a0001 c0001 t0014 g0060 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02622 hp2 a0001 c0001 t0001 g0008 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02630 hp1 a0001 c0001 t0001 g0045 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02630 hp2 a0001 c0001 t0001 g0002 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02647 hp1 a0001 c0001 t0001 g0038 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02647 hp2 a0001 c0001 t0003 g0007 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02683 hp1 a0001 c0001 t0004 g0010 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02683 hp2 a0001 c0001 t0001 g0003 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02698 hp1 a0001 c0001 t0004 g0010 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02698 hp2 a0001 c0001 t0001 g0002 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02717 hp1 a0001 c0001 t0001 g0008 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02717 hp2 a0001 c0001 t0001 g0023 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02723 hp1 a0001 c0001 t0001 g0041 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02723 hp2 a0001 c0001 t0001 g0014 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02735 hp1 a0001 c0001 t0001 g0001 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02735 hp2 a0001 c0001 t0001 g0005 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02738 hp1 a0001 c0002 t0001 g0016 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02738 hp2 a0001 c0001 t0001 g0002 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02809 hp1 a0001 c0001 t0001 g0001 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02809 hp2 a0001 c0001 t0003 g0053 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02818 hp1 a0001 c0001 t0001 g0001 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02818 hp2 a0001 c0001 t0001 g0064 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02886 hp1 a0001 c0001 t0001 g0001 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02886 hp2 a0001 c0001 t0015 g0049 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02897 hp1 a0001 c0001 t0001 g0012 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02897 hp2 a0001 c0001 t0001 g0001 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02922 hp1 a0001 c0001 t0001 g0001 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02922 hp2 a0001 c0001 t0001 g0001 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02965 hp1 a0001 c0001 t0005 g0019 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02965 hp2 a0001 c0001 t0003 g0007 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02970 hp1 a0001 c0001 t0001 g0001 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02970 hp2 a0001 c0001 t0001 g0001 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02976 hp1 a0001 c0001 t0001 g0001 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02976 hp2 a0001 c0001 t0007 g0017 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03130 hp1 a0001 c0001 t0001 g0001 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03130 hp2 a0001 c0001 t0003 g0007 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03139 hp1 a0001 c0001 t0005 g0029 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03139 hp2 a0001 c0001 t0003 g0007 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03195 hp1 a0001 c0001 t0001 g0008 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03195 hp2 a0001 c0001 t0001 g0012 AFR ESN LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03209 hp1 a0001 c0001 t0001 g0014 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03209 hp2 a0001 c0001 t0001 g0001 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03225 hp1 a0001 c0001 t0001 g0043 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03225 hp2 a0001 c0001 t0005 g0029 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03453 hp1 a0001 c0001 t0001 g0001 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03453 hp2 a0001 c0001 t0001 g0023 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03486 hp1 a0001 c0001 t0003 g0007 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03486 hp2 a0001 c0001 t0001 g0040 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03490 hp1 a0001 c0001 t0001 g0003 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03490 hp2 a0001 c0001 t0001 g0001 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03491 hp1 a0001 c0003 t0001 g0028 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03491 hp2 a0001 c0001 t0001 g0003 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03492 hp1 a0001 c0003 t0001 g0028 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03492 hp2 a0001 c0001 t0001 g0003 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03540 hp1 a0001 c0001 t0001 g0005 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03540 hp2 a0001 c0001 t0001 g0008 AFR GWD LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03579 hp1 a0001 c0001 t0001 g0008 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03579 hp2 a0001 c0001 t0003 g0007 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03669 hp1 a0001 c0001 t0001 g0002 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03669 hp2 a0001 c0001 t0001 g0003 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03688 hp1 a0001 c0001 t0001 g0005 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03688 hp2 a0001 c0001 t0001 g0003 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03710 hp1 a0001 c0001 t0001 g0001 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03710 hp2 a0001 c0001 t0001 g0047 SAS PJL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03831 hp1 a0001 c0001 t0002 g0021 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03831 hp2 a0001 c0001 t0001 g0002 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03834 hp1 a0001 c0001 t0001 g0002 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03834 hp2 a0001 c0001 t0001 g0001 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03927 hp1 a0001 c0001 t0001 g0001 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03927 hp2 a0001 c0001 t0001 g0002 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03942 hp1 a0001 c0001 t0002 g0021 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03942 hp2 a0001 c0001 t0001 g0011 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04115 hp1 a0001 c0001 t0001 g0001 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04115 hp2 a0001 c0001 t0001 g0005 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04184 hp1 a0001 c0001 t0001 g0003 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04184 hp2 a0001 c0001 t0001 g0002 SAS BEB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04199 hp1 a0001 c0001 t0001 g0001 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04199 hp2 a0001 c0001 t0001 g0002 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04204 hp1 a0001 c0001 t0001 g0001 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04204 hp2 a0001 c0001 t0001 g0005 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04228 hp1 a0001 c0001 t0001 g0003 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG04228 hp2 a0001 c0001 t0004 g0010 SAS STU LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18522 hp1 a0001 c0001 t0001 g0001 AFR YRI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18522 hp2 a0001 c0001 t0005 g0027 AFR YRI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18612 hp1 a0001 c0001 t0001 g0001 EAS CHB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18612 hp2 a0001 c0001 t0001 g0003 EAS CHB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18906 hp1 a0001 c0001 t0007 g0017 AFR YRI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18906 hp2 a0001 c0001 t0003 g0007 AFR YRI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18939 hp1 a0001 c0001 t0017 g0067 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18939 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18940 hp1 a0001 c0001 t0001 g0025 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18940 hp2 a0001 c0001 t0002 g0020 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18942 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18942 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18943 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18943 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18944 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18944 hp2 a0001 c0001 t0001 g0006 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18945 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18945 hp2 a0001 c0001 t0001 g0009 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18946 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18946 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18947 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18947 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18950 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18950 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18951 hp1 a0001 c0001 t0001 g0026 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18951 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18952 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18952 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18954 hp1 a0001 c0001 t0004 g0022 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18954 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18957 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18957 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18960 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18960 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18963 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18963 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18964 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18964 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18966 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18966 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18967 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18967 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18968 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18968 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18969 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18969 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18971 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18971 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18972 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18972 hp2 a0001 c0001 t0002 g0004 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18973 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18973 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18974 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18974 hp2 a0001 c0001 t0001 g0009 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18978 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18978 hp2 a0001 c0001 t0001 g0050 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18979 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18979 hp2 a0001 c0001 t0016 g0066 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18980 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18980 hp2 a0001 c0002 t0001 g0016 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18982 hp1 a0001 c0001 t0001 g0015 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18982 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18983 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18983 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18984 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18984 hp2 a0001 c0001 t0002 g0004 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18985 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18985 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18986 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18986 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18990 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18990 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18998 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18998 hp2 a0001 c0001 t0001 g0009 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18999 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA18999 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19000 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19000 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19001 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19001 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19002 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19002 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19003 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19003 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19005 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19005 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19007 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19007 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19009 hp1 a0001 c0001 t0001 g0026 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19009 hp2 a0001 c0001 t0002 g0004 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19010 hp1 a0001 c0001 t0013 g0059 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19010 hp2 a0001 c0001 t0004 g0010 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19011 hp1 a0001 c0001 t0002 g0004 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19011 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19012 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19012 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19030 hp1 a0001 c0001 t0001 g0001 AFR LWK LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19030 hp2 a0001 c0001 t0001 g0065 AFR LWK LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19043 hp1 a0001 c0001 t0001 g0001 AFR LWK LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19043 hp2 a0001 c0001 t0001 g0052 AFR LWK LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19054 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19054 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19055 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19055 hp2 a0001 c0001 t0001 g0015 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19056 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19056 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19057 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19057 hp2 a0001 c0001 t0001 g0058 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19060 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19060 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19064 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19064 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19065 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19065 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19066 hp1 a0001 c0001 t0004 g0022 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19066 hp2 a0001 c0001 t0001 g0009 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19067 hp1 a0001 c0001 t0001 g0009 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19067 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19068 hp1 a0001 c0001 t0001 g0015 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19068 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19070 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19070 hp2 a0001 c0001 t0001 g0009 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19074 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19074 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19079 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19079 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19081 hp1 a0001 c0001 t0001 g0056 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19081 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19082 hp1 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19082 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19083 hp1 a0001 c0001 t0001 g0025 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19083 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19084 hp1 a0001 c0001 t0004 g0010 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19084 hp2 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19085 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19085 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19088 hp1 a0001 c0001 t0001 g0002 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19088 hp2 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19091 hp1 a0001 c0001 t0001 g0003 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19091 hp2 a0001 c0001 t0001 g0001 EAS JPT LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19240 hp1 a0001 c0001 t0001 g0005 AFR YRI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA19240 hp2 a0001 c0001 t0001 g0002 AFR YRI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20129 hp1 a0001 c0001 t0003 g0018 AFR ASW LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20129 hp2 a0001 c0004 t0010 g0033 AFR ASW LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20752 hp1 a0001 c0001 t0001 g0002 EUR TSI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20752 hp2 a0001 c0001 t0004 g0010 EUR TSI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20805 hp1 a0001 c0001 t0001 g0002 EUR TSI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20805 hp2 a0001 c0001 t0001 g0057 EUR TSI LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20905 hp1 a0001 c0001 t0001 g0062 SAS GIH LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20905 hp2 a0001 c0001 t0001 g0005 SAS GIH LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01123 hp1 a0001 c0001 t0002 g0004 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG01123 hp2 a0001 c0001 t0001 g0002 AMR CLM LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02109 hp1 a0001 c0001 t0005 g0063 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02109 hp2 a0001 c0001 t0005 g0019 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02486 hp1 a0001 c0001 t0005 g0019 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02486 hp2 a0001 c0001 t0001 g0044 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02559 hp1 a0001 c0001 t0003 g0018 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG02559 hp2 a0001 c0001 t0001 g0048 AFR ACB LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03471 hp1 a0001 c0001 t0001 g0014 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG03471 hp2 a0001 c0001 t0001 g0012 AFR MSL LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG06807 hp1 a0001 c0001 t0001 g0012 AFR USA LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
HG06807 hp2 a0001 c0001 t0008 g0030 AFR USA LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20300 hp1 a0001 c0001 t0001 g0001 AFR USA LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA20300 hp2 a0001 c0001 t0001 g0002 AFR USA LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA21309 hp1 a0001 c0001 t0004 g0039 AFR LWK LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
NA21309 hp2 a0001 c0001 t0001 g0001 AFR LWK LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
homoSapiens_chm13v2 hp1 a0001 c0001 t0001 g0005 REF REF LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871
homoSapiens_grch38 hp1 a0001 c0001 t0001 g0002 REF REF LHX5_chr12_113457033_113476871 LHX5 chr12 113457033 113476871

chr:pos ref alt #
# of ahapid:amino-acid(protein) level
 ahapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos

chr:pos ref alt #
# of chapid
 chapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chr12:113463427 T
T
 C
C
 1 a0001c0002
a0001c0002
 3 HG00099.hp2
HG02738.hp1
NA18980.hp2
HG00099.hp2
HG02738.hp1
NA18980.hp2
 synonymous_variant LOW c.972A>G
c.972A>G
 p.Gly324Gly
p.Gly324Gly
 LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 1345/2739 972/1209 324/402 chr12 113463427
chr12:113468202 G
G
 A
A
 1 a0001c0004
a0001c0004
 1 NA20129.hp2
NA20129.hp2
 synonymous_variant LOW c.600C>T
c.600C>T
 p.Ala200Ala
p.Ala200Ala
 LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/5 973/2739 600/1209 200/402 chr12 113468202
chr12:113468253 G
G
 C
C
 1 a0001c0003
a0001c0003
 2 HG03491.hp1
HG03492.hp1
HG03491.hp1
HG03492.hp1
 synonymous_variant LOW c.549C>G
c.549C>G
 p.Pro183Pro
p.Pro183Pro
 LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/5 922/2739 549/1209 183/402 chr12 113468253

chr:pos ref alt #
# of thapid:transcript level
 thapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chr12:113462083 A
A
 AT
AT
 4 a0001c0001t0002
a0001c0001t0003
a0001c0001t0008
others(1): Show 
a0001c0001t0002
a0001c0001t0003
a0001c0001t0008
a0001c0001t0015
 37 HG00735.hp1
HG01070.hp1
HG01123.hp1
others(34): Show 
HG00735.hp1
HG01070.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp2
HG01169.hp1
HG01256.hp1
HG01361.hp1
HG01515.hp1
HG01884.hp1
HG01934.hp2
HG01975.hp2
HG02132.hp1
HG02148.hp2
HG02300.hp1
HG02559.hp1
HG02572.hp1
HG02572.hp2
HG02615.hp2
HG02647.hp2
HG02809.hp2
HG02886.hp2
HG02965.hp2
HG03130.hp2
HG03139.hp2
HG03486.hp1
HG03579.hp2
HG03831.hp1
HG03942.hp1
HG06807.hp2
NA18906.hp2
NA18940.hp2
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19011.hp1
NA20129.hp1
 3_prime_UTR_variant MODIFIER c.*1106dupA
c.*1106dupA
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 1106 chr12 113462083
chr12:113462159 C
C
 T
T
 1 a0001c0001t0007
a0001c0001t0007
 3 HG01891.hp2
HG02976.hp2
NA18906.hp1
HG01891.hp2
HG02976.hp2
NA18906.hp1
 3_prime_UTR_variant MODIFIER c.*1031G>A
c.*1031G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 1031 chr12 113462159
chr12:113462332 T
T
 C
C
 2 a0001c0001t0005
a0001c0004t0010
a0001c0001t0005
a0001c0004t0010
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*858A>G
c.*858A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 858 chr12 113462332
chr12:113462352 T
T
 C
C
 1 a0001c0001t0014
a0001c0001t0014
 1 HG02622.hp1
HG02622.hp1
 3_prime_UTR_variant MODIFIER c.*838A>G
c.*838A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 838 chr12 113462352
chr12:113462370 T
T
 C
C
 2 a0001c0001t0005
a0001c0004t0010
a0001c0001t0005
a0001c0004t0010
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*820A>G
c.*820A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 820 chr12 113462370
chr12:113462489 T
T
 G
G
 2 a0001c0001t0005
a0001c0004t0010
a0001c0001t0005
a0001c0004t0010
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*701A>C
c.*701A>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 701 chr12 113462489
chr12:113462563 G
G
 A
A
 1 a0001c0001t0015
a0001c0001t0015
 1 HG02886.hp2
HG02886.hp2
 3_prime_UTR_variant MODIFIER c.*627C>T
c.*627C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 627 chr12 113462563
chr12:113463000 G
G
 A
A
 1 a0001c0001t0008
a0001c0001t0008
 1 HG06807.hp2
HG06807.hp2
 3_prime_UTR_variant MODIFIER c.*190C>T
c.*190C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 190 chr12 113463000
chr12:113463015 C
C
 T
T
 1 a0001c0001t0013
a0001c0001t0013
 1 NA19010.hp1
NA19010.hp1
 3_prime_UTR_variant MODIFIER c.*175G>A
c.*175G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 175 chr12 113463015
chr12:113463023 C
C
 T
T
 1 a0001c0001t0004
a0001c0001t0004
 11 HG01993.hp2
HG02258.hp1
HG02683.hp1
others(8): Show 
HG01993.hp2
HG02258.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
NA21309.hp1
 3_prime_UTR_variant MODIFIER c.*167G>A
c.*167G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 167 chr12 113463023
chr12:113463075 A
A
 G
G
 2 a0001c0001t0005
a0001c0004t0010
a0001c0001t0005
a0001c0004t0010
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*115T>C
c.*115T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 5/5 115 chr12 113463075
chr12:113471524 C
C
 A
A
 1 a0001c0001t0016
a0001c0001t0016
 1 NA18979.hp2
NA18979.hp2
 5_prime_UTR_premature_start_codon_gain_variant LOW c.-26G>T
c.-26G>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 chr12 113471524
chr12:113471571 T
T
 A
A
 1 a0001c0001t0017
a0001c0001t0017
 1 NA18939.hp1
NA18939.hp1
 5_prime_UTR_variant MODIFIER c.-73A>T
c.-73A>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 73 chr12 113471571
chr12:113471572 C
C
 G
G
 1 a0001c0001t0012
a0001c0001t0012
 1 HG01074.hp2
HG01074.hp2
 5_prime_UTR_variant MODIFIER c.-74G>C
c.-74G>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 74 chr12 113471572
chr12:113471596 A
A
 C
C
 1 a0001c0001t0011
a0001c0001t0011
 1 HG02148.hp1
HG02148.hp1
 5_prime_UTR_variant MODIFIER c.-98T>G
c.-98T>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 98 chr12 113471596
chr12:113471739 C
C
 T
T
 1 a0001c0001t0006
a0001c0001t0006
 3 HG01257.hp1
HG01258.hp1
HG01346.hp1
HG01257.hp1
HG01258.hp1
HG01346.hp1
 5_prime_UTR_variant MODIFIER c.-241G>A
c.-241G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 241 chr12 113471739
chr12:113471760 C
C
 T
T
 1 a0001c0004t0010
a0001c0004t0010
 1 NA20129.hp2
NA20129.hp2
 5_prime_UTR_variant MODIFIER c.-262G>A
c.-262G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 262 chr12 113471760
chr12:113471802 G
G
 T
T
 1 a0001c0001t0009
a0001c0001t0009
 1 HG02080.hp2
HG02080.hp2
 5_prime_UTR_variant MODIFIER c.-304C>A
c.-304C>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 304 chr12 113471802
chr12:113471810 C
C
 T
T
 2 a0001c0001t0002
a0001c0001t0008
a0001c0001t0002
a0001c0001t0008
 21 HG00735.hp1
HG01070.hp1
HG01123.hp1
others(18): Show 
HG00735.hp1
HG01070.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp2
HG01169.hp1
HG01361.hp1
HG01515.hp1
HG01934.hp2
HG01975.hp2
HG02132.hp1
HG02148.hp2
HG02300.hp1
HG03831.hp1
HG03942.hp1
HG06807.hp2
NA18940.hp2
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19011.hp1
 5_prime_UTR_variant MODIFIER c.-312G>A
c.-312G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/5 312 chr12 113471810

chr:pos ref alt #
# of ghapid:genebody level
 ghapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid genebody_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chr12:113463575 G
G
 A
A
 1 a0001c0001t0001g0011
a0001c0001t0001g0011
 5 HG00408.hp1
HG00438.hp1
HG02056.hp2
others(2): Show 
HG00408.hp1
HG00438.hp1
HG02056.hp2
HG02523.hp1
HG03942.hp2
 intron_variant MODIFIER c.842-18C>T
c.842-18C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463575
chr12:113463626 C
C
 T
T
 4 a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
others(1): Show 
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
 10 HG01993.hp2
HG02258.hp1
HG02683.hp1
others(7): Show 
HG01993.hp2
HG02258.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
 intron_variant MODIFIER c.842-69G>A
c.842-69G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463626
chr12:113463738 G
G
 C
C
 1 a0001c0001t0004g0036
a0001c0001t0004g0036
 1 HG01993.hp2
HG01993.hp2
 intron_variant MODIFIER c.842-181C>G
c.842-181C>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463738
chr12:113463847 C
C
 T
T
 5 a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
others(2): Show 
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0004t0010g0033
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 intron_variant MODIFIER c.842-290G>A
c.842-290G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463847
chr12:113463852 C
C
 T
T
 5 a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
others(2): Show 
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0004t0010g0033
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 intron_variant MODIFIER c.842-295G>A
c.842-295G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463852
chr12:113463869 C
C
 CAA
CAA
 17 a0001c0001t0001g0038
a0001c0001t0001g0041
a0001c0001t0002g0004
others(14): Show 
a0001c0001t0001g0038
a0001c0001t0001g0041
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0001t0008g0030
a0001c0004t0010g0033
 43 HG00735.hp1
HG01070.hp1
HG01109.hp1
others(40): Show 
HG00735.hp1
HG01070.hp1
HG01109.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp2
HG01169.hp1
HG01361.hp1
HG01515.hp1
HG01934.hp2
HG01975.hp2
HG01993.hp2
HG02109.hp1
HG02109.hp2
HG02132.hp1
HG02148.hp2
HG02258.hp1
HG02300.hp1
HG02486.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG02723.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
HG03831.hp1
HG03942.hp1
HG04228.hp2
HG06807.hp2
NA18522.hp2
NA18940.hp2
NA18954.hp1
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19010.hp2
NA19011.hp1
NA19066.hp1
NA19084.hp1
NA20129.hp2
NA20752.hp2
NA21309.hp1
 intron_variant MODIFIER c.842-313_842-312ins
others(2): Show 
c.842-313_842-312insTT
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463869
chr12:113463936 A
A
 G
G
 1 a0001c0001t0004g0022
a0001c0001t0004g0022
 2 NA18954.hp1
NA19066.hp1
NA18954.hp1
NA19066.hp1
 intron_variant MODIFIER c.842-379T>C
c.842-379T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463936
chr12:113463961 G
G
 A
A
 1 a0001c0001t0001g0012
a0001c0001t0001g0012
 4 HG02897.hp1
HG03195.hp2
HG03471.hp2
others(1): Show 
HG02897.hp1
HG03195.hp2
HG03471.hp2
HG06807.hp1
 intron_variant MODIFIER c.842-404C>T
c.842-404C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113463961
chr12:113464026 A
A
 G
G
 1 a0001c0001t0001g0048
a0001c0001t0001g0048
 1 HG02559.hp2
HG02559.hp2
 intron_variant MODIFIER c.842-469T>C
c.842-469T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464026
chr12:113464047 A
A
 T
T
 7 a0001c0001t0001g0003
a0001c0001t0001g0015
a0001c0001t0001g0026
others(4): Show 
a0001c0001t0001g0003
a0001c0001t0001g0015
a0001c0001t0001g0026
a0001c0001t0001g0042
a0001c0001t0001g0050
a0001c0001t0001g0056
a0001c0002t0001g0016
 77 HG00099.hp1
HG00099.hp2
HG00280.hp2
others(74): Show 
HG00099.hp1
HG00099.hp2
HG00280.hp2
HG00408.hp2
HG00544.hp1
HG00597.hp2
HG00609.hp1
HG00609.hp2
HG00621.hp1
HG00673.hp2
HG00738.hp1
HG01099.hp2
HG01192.hp1
HG01261.hp2
HG01515.hp2
HG01517.hp2
HG02040.hp1
HG02040.hp2
HG02074.hp2
HG02083.hp2
HG02135.hp2
HG02145.hp2
HG02155.hp1
HG02165.hp1
HG02683.hp2
HG02738.hp1
HG03490.hp1
HG03491.hp2
HG03492.hp2
HG03669.hp2
HG03688.hp2
HG04184.hp1
HG04228.hp1
NA18612.hp2
NA18939.hp2
NA18943.hp1
NA18944.hp1
NA18946.hp2
NA18951.hp1
NA18952.hp1
NA18964.hp1
NA18966.hp2
NA18967.hp2
NA18969.hp2
NA18971.hp2
NA18972.hp1
NA18973.hp1
NA18978.hp2
NA18980.hp2
NA18982.hp1
NA18983.hp1
NA18983.hp2
NA18986.hp1
NA18990.hp2
NA18998.hp1
NA18999.hp2
NA19001.hp1
NA19002.hp2
NA19003.hp1
NA19005.hp2
NA19007.hp1
NA19009.hp1
NA19011.hp2
NA19012.hp2
NA19054.hp1
NA19055.hp2
NA19056.hp1
NA19057.hp1
NA19060.hp1
NA19064.hp1
NA19065.hp2
NA19068.hp1
NA19068.hp2
NA19081.hp1
NA19085.hp2
NA19088.hp2
NA19091.hp1
 intron_variant MODIFIER c.842-490T>A
c.842-490T>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464047
chr12:113464230 C
C
 G
G
 1 a0001c0001t0001g0026
a0001c0001t0001g0026
 2 NA18951.hp1
NA19009.hp1
NA18951.hp1
NA19009.hp1
 intron_variant MODIFIER c.842-673G>C
c.842-673G>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464230
chr12:113464316 A
A
 C
C
 5 a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
others(2): Show 
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0004t0010g0033
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 intron_variant MODIFIER c.842-759T>G
c.842-759T>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464316
chr12:113464324 G
G
 C
C
 1 a0001c0001t0002g0021
a0001c0001t0002g0021
 2 HG03831.hp1
HG03942.hp1
HG03831.hp1
HG03942.hp1
 intron_variant MODIFIER c.842-767C>G
c.842-767C>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464324
chr12:113464393 C
C
 T
T
 1 a0001c0001t0001g0025
a0001c0001t0001g0025
 2 NA18940.hp1
NA19083.hp1
NA18940.hp1
NA19083.hp1
 intron_variant MODIFIER c.842-836G>A
c.842-836G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464393
chr12:113464429 G
G
 C
C
 1 a0001c0001t0001g0050
a0001c0001t0001g0050
 1 NA18978.hp2
NA18978.hp2
 intron_variant MODIFIER c.842-872C>G
c.842-872C>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464429
chr12:113464462 T
T
 C
C
 5 a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
others(2): Show 
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0004t0010g0033
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 intron_variant MODIFIER c.842-905A>G
c.842-905A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464462
chr12:113464522 G
G
 C
C
 1 a0001c0001t0001g0051
a0001c0001t0001g0051
 1 HG02615.hp1
HG02615.hp1
 intron_variant MODIFIER c.842-965C>G
c.842-965C>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464522
chr12:113464586 G
G
 C
C
 1 a0001c0001t0001g0052
a0001c0001t0001g0052
 1 NA19043.hp2
NA19043.hp2
 intron_variant MODIFIER c.842-1029C>G
c.842-1029C>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464586
chr12:113464654 C
C
 T
T
 2 a0001c0001t0001g0006
a0001c0001t0001g0054
a0001c0001t0001g0006
a0001c0001t0001g0054
 15 HG01081.hp2
HG01192.hp2
HG01256.hp2
others(12): Show 
HG01081.hp2
HG01192.hp2
HG01256.hp2
HG01258.hp2
HG01928.hp1
HG01934.hp1
HG01952.hp2
HG01978.hp2
HG01981.hp1
HG01981.hp2
HG01993.hp1
HG02004.hp1
HG02293.hp2
HG02300.hp2
NA18944.hp2
 intron_variant MODIFIER c.842-1097G>A
c.842-1097G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464654
chr12:113464692 C
C
 G
G
 2 a0001c0001t0001g0023
a0001c0001t0001g0040
a0001c0001t0001g0023
a0001c0001t0001g0040
 3 HG02717.hp2
HG03453.hp2
HG03486.hp2
HG02717.hp2
HG03453.hp2
HG03486.hp2
 intron_variant MODIFIER c.842-1135G>C
c.842-1135G>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464692
chr12:113464810 T
T
 C
C
 5 a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
others(2): Show 
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0004t0010g0033
 9 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(6): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02486.hp1
HG02965.hp1
HG03139.hp1
HG03225.hp2
NA18522.hp2
NA20129.hp2
 intron_variant MODIFIER c.842-1253A>G
c.842-1253A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464810
chr12:113464830 C
C
 A
A
 1 a0001c0001t0004g0037
a0001c0001t0004g0037
 1 HG02258.hp1
HG02258.hp1
 intron_variant MODIFIER c.842-1273G>T
c.842-1273G>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113464830
chr12:113465016 A
A
 G
G
 1 a0001c0001t0002g0020
a0001c0001t0002g0020
 2 HG02132.hp1
NA18940.hp2
HG02132.hp1
NA18940.hp2
 intron_variant MODIFIER c.842-1459T>C
c.842-1459T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113465016
chr12:113465306 C
C
 T
T
 6 a0001c0001t0001g0038
a0001c0001t0004g0010
a0001c0001t0004g0022
others(3): Show 
a0001c0001t0001g0038
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
 12 HG01993.hp2
HG02258.hp1
HG02647.hp1
others(9): Show 
HG01993.hp2
HG02258.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
NA21309.hp1
 intron_variant MODIFIER c.842-1749G>A
c.842-1749G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113465306
chr12:113465398 C
C
 A
A
 1 a0001c0001t0003g0053
a0001c0001t0003g0053
 1 HG02809.hp2
HG02809.hp2
 intron_variant MODIFIER c.842-1841G>T
c.842-1841G>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113465398
chr12:113465644 G
G
 A
A
 4 a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
others(1): Show 
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
 10 HG01993.hp2
HG02258.hp1
HG02683.hp1
others(7): Show 
HG01993.hp2
HG02258.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
 intron_variant MODIFIER c.841+1612C>T
c.841+1612C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113465644
chr12:113465730 C
C
 T
T
 1 a0001c0001t0001g0009
a0001c0001t0001g0009
 8 HG00673.hp1
HG02523.hp2
NA18945.hp2
others(5): Show 
HG00673.hp1
HG02523.hp2
NA18945.hp2
NA18974.hp2
NA18998.hp2
NA19066.hp2
NA19067.hp1
NA19070.hp2
 intron_variant MODIFIER c.841+1526G>A
c.841+1526G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113465730
chr12:113465863 G
G
 A
A
 14 a0001c0001t0001g0008
a0001c0001t0001g0023
a0001c0001t0001g0040
others(11): Show 
a0001c0001t0001g0008
a0001c0001t0001g0023
a0001c0001t0001g0040
a0001c0001t0001g0041
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0001t0008g0030
a0001c0004t0010g0033
 43 HG00735.hp1
HG01070.hp1
HG01109.hp1
others(40): Show 
HG00735.hp1
HG01070.hp1
HG01109.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp1
HG01168.hp2
HG01169.hp1
HG01169.hp2
HG01361.hp1
HG01515.hp1
HG01884.hp2
HG01934.hp2
HG01975.hp2
HG02109.hp1
HG02109.hp2
HG02132.hp1
HG02148.hp2
HG02280.hp1
HG02300.hp1
HG02486.hp1
HG02622.hp2
HG02717.hp1
HG02717.hp2
HG02723.hp1
HG02965.hp1
HG03139.hp1
HG03195.hp1
HG03225.hp2
HG03453.hp2
HG03486.hp2
HG03540.hp2
HG03579.hp1
HG03831.hp1
HG03942.hp1
HG06807.hp2
NA18522.hp2
NA18940.hp2
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19011.hp1
NA20129.hp2
 intron_variant MODIFIER c.841+1393C>T
c.841+1393C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113465863
chr12:113466034 G
G
 T
T
 1 a0001c0001t0002g0031
a0001c0001t0002g0031
 1 HG01515.hp1
HG01515.hp1
 intron_variant MODIFIER c.841+1222C>A
c.841+1222C>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466034
chr12:113466131 A
A
 G
G
 1 a0001c0001t0001g0047
a0001c0001t0001g0047
 1 HG03710.hp2
HG03710.hp2
 intron_variant MODIFIER c.841+1125T>C
c.841+1125T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466131
chr12:113466162 A
A
 G
G
 1 a0001c0001t0001g0041
a0001c0001t0001g0041
 1 HG02723.hp1
HG02723.hp1
 intron_variant MODIFIER c.841+1094T>C
c.841+1094T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466162
chr12:113466571 C
C
 T
T
 1 a0001c0001t0001g0008
a0001c0001t0001g0008
 9 HG01168.hp1
HG01169.hp2
HG01884.hp2
others(6): Show 
HG01168.hp1
HG01169.hp2
HG01884.hp2
HG02280.hp1
HG02622.hp2
HG02717.hp1
HG03195.hp1
HG03540.hp2
HG03579.hp1
 intron_variant MODIFIER c.841+685G>A
c.841+685G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466571
chr12:113466594 T
T
 C
C
 1 a0001c0001t0001g0044
a0001c0001t0001g0044
 1 HG02486.hp2
HG02486.hp2
 intron_variant MODIFIER c.841+662A>G
c.841+662A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466594
chr12:113466688 G
G
 T
T
 1 a0001c0001t0005g0063
a0001c0001t0005g0063
 1 HG02109.hp1
HG02109.hp1
 intron_variant MODIFIER c.841+568C>A
c.841+568C>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466688
chr12:113466731 C
C
 G
G
 4 a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
others(1): Show 
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
 10 HG01993.hp2
HG02258.hp1
HG02683.hp1
others(7): Show 
HG01993.hp2
HG02258.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
 intron_variant MODIFIER c.841+525G>C
c.841+525G>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466731
chr12:113466783 C
C
 T
T
 2 a0001c0001t0001g0023
a0001c0001t0001g0040
a0001c0001t0001g0023
a0001c0001t0001g0040
 3 HG02717.hp2
HG03453.hp2
HG03486.hp2
HG02717.hp2
HG03453.hp2
HG03486.hp2
 intron_variant MODIFIER c.841+473G>A
c.841+473G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466783
chr12:113466784 A
A
 G
G
 1 a0001c0001t0001g0023
a0001c0001t0001g0023
 2 HG02717.hp2
HG03453.hp2
HG02717.hp2
HG03453.hp2
 intron_variant MODIFIER c.841+472T>C
c.841+472T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466784
chr12:113466930 G
G
 A
A
 1 a0001c0001t0001g0038
a0001c0001t0001g0038
 1 HG02647.hp1
HG02647.hp1
 intron_variant MODIFIER c.841+326C>T
c.841+326C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113466930
chr12:113467127 G
G
 C
C
 1 a0001c0001t0001g0054
a0001c0001t0001g0054
 1 HG01934.hp1
HG01934.hp1
 intron_variant MODIFIER c.841+129C>G
c.841+129C>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113467127
chr12:113467212 G
G
 A
A
 1 a0001c0001t0001g0061
a0001c0001t0001g0061
 1 HG02155.hp2
HG02155.hp2
 intron_variant MODIFIER c.841+44C>T
c.841+44C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 4/4 chr12 113467212
chr12:113467470 C
C
 T
T
 2 a0001c0001t0001g0011
a0001c0001t0001g0015
a0001c0001t0001g0011
a0001c0001t0001g0015
 8 HG00408.hp1
HG00438.hp1
HG02056.hp2
others(5): Show 
HG00408.hp1
HG00438.hp1
HG02056.hp2
HG02523.hp1
HG03942.hp2
NA18982.hp1
NA19055.hp2
NA19068.hp1
 intron_variant MODIFIER c.676-49G>A
c.676-49G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467470
chr12:113467474 C
C
 G
G
 1 a0001c0001t0001g0058
a0001c0001t0001g0058
 1 NA19057.hp2
NA19057.hp2
 intron_variant MODIFIER c.676-53G>C
c.676-53G>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467474
chr12:113467575 G
G
 A
A
 1 a0001c0001t0001g0055
a0001c0001t0001g0055
 1 HG02257.hp1
HG02257.hp1
 intron_variant MODIFIER c.676-154C>T
c.676-154C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467575
chr12:113467648 T
T
 C
C
 1 a0001c0001t0001g0024
a0001c0001t0001g0024
 2 HG00733.hp1
HG00741.hp1
HG00733.hp1
HG00741.hp1
 intron_variant MODIFIER c.676-227A>G
c.676-227A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467648
chr12:113467743 C
C
 T
T
 4 a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
others(1): Show 
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
 10 HG01993.hp2
HG02258.hp1
HG02683.hp1
others(7): Show 
HG01993.hp2
HG02258.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
 intron_variant MODIFIER c.676-322G>A
c.676-322G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467743
chr12:113467767 C
C
 A
A
 1 a0001c0001t0001g0045
a0001c0001t0001g0045
 1 HG02630.hp1
HG02630.hp1
 intron_variant MODIFIER c.676-346G>T
c.676-346G>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467767
chr12:113467881 G
G
 A
A
 1 a0001c0001t0005g0029
a0001c0001t0005g0029
 2 HG03139.hp1
HG03225.hp2
HG03139.hp1
HG03225.hp2
 intron_variant MODIFIER c.675+246C>T
c.675+246C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467881
chr12:113467905 G
G
 T
T
 1 a0001c0001t0001g0046
a0001c0001t0001g0046
 1 HG01891.hp1
HG01891.hp1
 intron_variant MODIFIER c.675+222C>A
c.675+222C>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113467905
chr12:113468088 C
C
 A
A
 1 a0001c0001t0001g0056
a0001c0001t0001g0056
 1 NA19081.hp1
NA19081.hp1
 intron_variant MODIFIER c.675+39G>T
c.675+39G>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 3/4 chr12 113468088
chr12:113468455 C
C
 A
A
 1 a0001c0001t0001g0057
a0001c0001t0001g0057
 1 NA20805.hp2
NA20805.hp2
 intron_variant MODIFIER c.398-51G>T
c.398-51G>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 2/4 chr12 113468455
chr12:113468773 C
C
 T
T
 5 a0001c0001t0001g0005
a0001c0001t0001g0024
a0001c0001t0001g0043
others(2): Show 
a0001c0001t0001g0005
a0001c0001t0001g0024
a0001c0001t0001g0043
a0001c0001t0001g0044
a0001c0001t0001g0045
 19 HG00733.hp1
HG00741.hp1
HG01081.hp1
others(16): Show 
HG00733.hp1
HG00741.hp1
HG01081.hp1
HG01346.hp2
HG01358.hp2
HG01943.hp1
HG02258.hp2
HG02486.hp2
HG02602.hp1
HG02630.hp1
HG02735.hp2
HG03225.hp1
HG03540.hp1
HG03688.hp1
HG04115.hp2
HG04204.hp2
NA19240.hp1
NA20905.hp2
homoSapiens_chm13v2.hp1
 intron_variant MODIFIER c.397+349G>A
c.397+349G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 2/4 chr12 113468773
chr12:113468821 G
G
 A
A
 11 a0001c0001t0001g0038
a0001c0001t0002g0004
a0001c0001t0002g0020
others(8): Show 
a0001c0001t0001g0038
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
a0001c0001t0008g0030
 33 HG00735.hp1
HG01070.hp1
HG01123.hp1
others(30): Show 
HG00735.hp1
HG01070.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp2
HG01169.hp1
HG01361.hp1
HG01515.hp1
HG01934.hp2
HG01975.hp2
HG01993.hp2
HG02132.hp1
HG02148.hp2
HG02258.hp1
HG02300.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG03831.hp1
HG03942.hp1
HG04228.hp2
HG06807.hp2
NA18940.hp2
NA18954.hp1
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19010.hp2
NA19011.hp1
NA19066.hp1
NA19084.hp1
NA20752.hp2
NA21309.hp1
 intron_variant MODIFIER c.397+301C>T
c.397+301C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 2/4 chr12 113468821
chr12:113469542 G
G
 A
A
 1 a0001c0001t0001g0062
a0001c0001t0001g0062
 1 NA20905.hp1
NA20905.hp1
 intron_variant MODIFIER c.174-197C>T
c.174-197C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113469542
chr12:113469754 C
C
 T
T
 55 a0001c0001t0001g0001
a0001c0001t0001g0003
a0001c0001t0001g0005
others(52): Show 
a0001c0001t0001g0001
a0001c0001t0001g0003
a0001c0001t0001g0005
a0001c0001t0001g0006
a0001c0001t0001g0008
a0001c0001t0001g0009
a0001c0001t0001g0011
a0001c0001t0001g0012
a0001c0001t0001g0014
a0001c0001t0001g0015
a0001c0001t0001g0023
a0001c0001t0001g0024
a0001c0001t0001g0025
a0001c0001t0001g0026
a0001c0001t0001g0038
a0001c0001t0001g0040
a0001c0001t0001g0041
a0001c0001t0001g0042
a0001c0001t0001g0043
a0001c0001t0001g0044
a0001c0001t0001g0045
a0001c0001t0001g0046
a0001c0001t0001g0047
a0001c0001t0001g0048
a0001c0001t0001g0050
a0001c0001t0001g0051
a0001c0001t0001g0052
a0001c0001t0001g0054
a0001c0001t0001g0055
a0001c0001t0001g0056
a0001c0001t0001g0057
a0001c0001t0001g0064
a0001c0001t0001g0065
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0003g0007
a0001c0001t0003g0053
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
a0001c0001t0005g0019
a0001c0001t0005g0027
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0001t0006g0013
a0001c0001t0008g0030
a0001c0001t0009g0032
a0001c0001t0015g0049
a0001c0001t0016g0066
a0001c0002t0001g0016
a0001c0004t0010g0033
 298 HG00099.hp1
HG00099.hp2
HG00140.hp1
others(295): Show 
HG00099.hp1
HG00099.hp2
HG00140.hp1
HG00280.hp1
HG00280.hp2
HG00323.hp1
HG00408.hp1
HG00408.hp2
HG00438.hp1
HG00438.hp2
HG00544.hp1
HG00544.hp2
HG00597.hp1
HG00597.hp2
HG00609.hp1
HG00609.hp2
HG00621.hp1
HG00621.hp2
HG00642.hp2
HG00673.hp1
HG00673.hp2
HG00733.hp1
HG00735.hp1
HG00738.hp1
HG00741.hp1
HG01069.hp1
HG01070.hp1
HG01071.hp2
HG01081.hp1
HG01081.hp2
HG01099.hp1
HG01099.hp2
HG01109.hp1
HG01123.hp1
HG01167.hp1
HG01167.hp2
HG01168.hp1
HG01168.hp2
HG01169.hp1
HG01169.hp2
HG01192.hp1
HG01192.hp2
HG01243.hp2
HG01256.hp2
HG01257.hp1
HG01258.hp1
HG01258.hp2
HG01261.hp2
HG01346.hp1
HG01346.hp2
HG01358.hp2
HG01361.hp1
HG01433.hp2
HG01515.hp1
HG01515.hp2
HG01517.hp2
HG01884.hp1
HG01884.hp2
HG01891.hp1
HG01928.hp1
HG01934.hp1
HG01934.hp2
HG01943.hp1
HG01952.hp2
HG01975.hp2
HG01978.hp1
HG01978.hp2
HG01981.hp1
HG01981.hp2
HG01993.hp1
HG01993.hp2
HG02004.hp1
HG02004.hp2
HG02015.hp1
HG02015.hp2
HG02027.hp1
HG02040.hp1
HG02040.hp2
HG02056.hp2
HG02074.hp1
HG02074.hp2
HG02080.hp2
HG02083.hp1
HG02083.hp2
HG02109.hp1
HG02109.hp2
HG02129.hp1
HG02129.hp2
HG02132.hp1
HG02132.hp2
HG02135.hp1
HG02135.hp2
HG02145.hp1
HG02145.hp2
HG02148.hp2
HG02155.hp1
HG02165.hp1
HG02257.hp1
HG02257.hp2
HG02258.hp1
HG02258.hp2
HG02280.hp1
HG02280.hp2
HG02293.hp1
HG02293.hp2
HG02300.hp1
HG02300.hp2
HG02451.hp1
HG02451.hp2
HG02486.hp1
HG02486.hp2
HG02523.hp1
HG02523.hp2
HG02559.hp2
HG02572.hp1
HG02572.hp2
HG02602.hp1
HG02615.hp1
HG02615.hp2
HG02622.hp2
HG02630.hp1
HG02647.hp1
HG02647.hp2
HG02683.hp1
HG02683.hp2
HG02698.hp1
HG02717.hp1
HG02717.hp2
HG02723.hp1
HG02723.hp2
HG02735.hp1
HG02735.hp2
HG02738.hp1
HG02809.hp1
HG02809.hp2
HG02818.hp1
HG02818.hp2
HG02886.hp1
HG02886.hp2
HG02897.hp1
HG02897.hp2
HG02922.hp1
HG02922.hp2
HG02965.hp1
HG02965.hp2
HG02970.hp1
HG02970.hp2
HG02976.hp1
HG03130.hp1
HG03130.hp2
HG03139.hp1
HG03139.hp2
HG03195.hp1
HG03195.hp2
HG03209.hp1
HG03209.hp2
HG03225.hp1
HG03225.hp2
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03471.hp2
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03490.hp2
HG03491.hp2
HG03492.hp2
HG03540.hp1
HG03540.hp2
HG03579.hp1
HG03579.hp2
HG03669.hp2
HG03688.hp1
HG03688.hp2
HG03710.hp1
HG03710.hp2
HG03831.hp1
HG03834.hp2
HG03927.hp1
HG03942.hp1
HG03942.hp2
HG04115.hp1
HG04115.hp2
HG04184.hp1
HG04199.hp1
HG04204.hp1
HG04204.hp2
HG04228.hp1
HG04228.hp2
HG06807.hp1
HG06807.hp2
NA18522.hp1
NA18522.hp2
NA18612.hp1
NA18612.hp2
NA18906.hp2
NA18939.hp2
NA18940.hp1
NA18940.hp2
NA18942.hp1
NA18943.hp1
NA18944.hp1
NA18944.hp2
NA18945.hp2
NA18946.hp2
NA18947.hp1
NA18950.hp2
NA18951.hp1
NA18952.hp1
NA18952.hp2
NA18954.hp1
NA18964.hp1
NA18966.hp2
NA18967.hp1
NA18967.hp2
NA18968.hp1
NA18969.hp2
NA18971.hp2
NA18972.hp1
NA18972.hp2
NA18973.hp1
NA18973.hp2
NA18974.hp1
NA18974.hp2
NA18978.hp2
NA18979.hp2
NA18980.hp1
NA18980.hp2
NA18982.hp1
NA18983.hp1
NA18983.hp2
NA18984.hp2
NA18985.hp2
NA18986.hp1
NA18986.hp2
NA18990.hp2
NA18998.hp1
NA18998.hp2
NA18999.hp1
NA18999.hp2
NA19000.hp1
NA19001.hp1
NA19001.hp2
NA19002.hp1
NA19002.hp2
NA19003.hp1
NA19005.hp2
NA19007.hp1
NA19007.hp2
NA19009.hp1
NA19009.hp2
NA19010.hp2
NA19011.hp1
NA19011.hp2
NA19012.hp1
NA19012.hp2
NA19030.hp1
NA19030.hp2
NA19043.hp1
NA19043.hp2
NA19054.hp1
NA19055.hp1
NA19055.hp2
NA19056.hp1
NA19056.hp2
NA19057.hp1
NA19060.hp1
NA19064.hp1
NA19065.hp1
NA19065.hp2
NA19066.hp1
NA19066.hp2
NA19067.hp1
NA19068.hp1
NA19068.hp2
NA19070.hp1
NA19070.hp2
NA19074.hp1
NA19079.hp2
NA19081.hp1
NA19082.hp1
NA19083.hp1
NA19083.hp2
NA19084.hp1
NA19085.hp2
NA19088.hp2
NA19091.hp1
NA19091.hp2
NA19240.hp1
NA20129.hp2
NA20300.hp1
NA20752.hp2
NA20805.hp2
NA20905.hp2
NA21309.hp1
NA21309.hp2
homoSapiens_chm13v2.hp1
 intron_variant MODIFIER c.174-409G>A
c.174-409G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113469754
chr12:113470064 A
A
 G
G
 1 a0001c0001t0001g0014
a0001c0001t0001g0014
 3 HG02723.hp2
HG03209.hp1
HG03471.hp1
HG02723.hp2
HG03209.hp1
HG03471.hp1
 intron_variant MODIFIER c.174-719T>C
c.174-719T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470064
chr12:113470068 T
T
 C
C
 1 a0001c0001t0001g0008
a0001c0001t0001g0008
 9 HG01168.hp1
HG01169.hp2
HG01884.hp2
others(6): Show 
HG01168.hp1
HG01169.hp2
HG01884.hp2
HG02280.hp1
HG02622.hp2
HG02717.hp1
HG03195.hp1
HG03540.hp2
HG03579.hp1
 intron_variant MODIFIER c.174-723A>G
c.174-723A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470068
chr12:113470072 T
T
 C
C
 5 a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
others(2): Show 
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0008g0030
 21 HG00735.hp1
HG01070.hp1
HG01123.hp1
others(18): Show 
HG00735.hp1
HG01070.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp2
HG01169.hp1
HG01361.hp1
HG01515.hp1
HG01934.hp2
HG01975.hp2
HG02132.hp1
HG02148.hp2
HG02300.hp1
HG03831.hp1
HG03942.hp1
HG06807.hp2
NA18940.hp2
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19011.hp1
 intron_variant MODIFIER c.174-727A>G
c.174-727A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470072
chr12:113470200 C
C
 T
T
 4 a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
others(1): Show 
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
 10 HG01993.hp2
HG02258.hp1
HG02683.hp1
others(7): Show 
HG01993.hp2
HG02258.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
 intron_variant MODIFIER c.174-855G>A
c.174-855G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470200
chr12:113470211 T
T
 G
G
 1 a0001c0001t0017g0067
a0001c0001t0017g0067
 1 NA18939.hp1
NA18939.hp1
 intron_variant MODIFIER c.174-866A>C
c.174-866A>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470211
chr12:113470212 G
G
 T
T
 1 a0001c0001t0017g0067
a0001c0001t0017g0067
 1 NA18939.hp1
NA18939.hp1
 intron_variant MODIFIER c.174-867C>A
c.174-867C>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470212
chr12:113470259 C
C
 G
G
 1 a0001c0001t0001g0043
a0001c0001t0001g0043
 1 HG03225.hp1
HG03225.hp1
 intron_variant MODIFIER c.174-914G>C
c.174-914G>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470259
chr12:113470268 C
C
 G
G
 6 a0001c0001t0001g0038
a0001c0001t0004g0010
a0001c0001t0004g0022
others(3): Show 
a0001c0001t0001g0038
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
 12 HG01993.hp2
HG02258.hp1
HG02647.hp1
others(9): Show 
HG01993.hp2
HG02258.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
NA21309.hp1
 intron_variant MODIFIER c.174-923G>C
c.174-923G>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470268
chr12:113470386 A
A
 G
G
 5 a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
others(2): Show 
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0008g0030
 21 HG00735.hp1
HG01070.hp1
HG01123.hp1
others(18): Show 
HG00735.hp1
HG01070.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp2
HG01169.hp1
HG01361.hp1
HG01515.hp1
HG01934.hp2
HG01975.hp2
HG02132.hp1
HG02148.hp2
HG02300.hp1
HG03831.hp1
HG03942.hp1
HG06807.hp2
NA18940.hp2
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19011.hp1
 intron_variant MODIFIER c.173+940T>C
c.173+940T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470386
chr12:113470448 A
A
 G
G
 1 a0001c0001t0001g0042
a0001c0001t0001g0042
 1 HG02083.hp2
HG02083.hp2
 intron_variant MODIFIER c.173+878T>C
c.173+878T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470448
chr12:113470604 T
T
 C
C
 19 a0001c0001t0001g0008
a0001c0001t0001g0023
a0001c0001t0001g0038
others(16): Show 
a0001c0001t0001g0008
a0001c0001t0001g0023
a0001c0001t0001g0038
a0001c0001t0001g0040
a0001c0001t0001g0041
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
a0001c0001t0005g0019
a0001c0001t0005g0029
a0001c0001t0005g0063
a0001c0001t0008g0030
a0001c0004t0010g0033
 53 HG00735.hp1
HG01070.hp1
HG01123.hp1
others(50): Show 
HG00735.hp1
HG01070.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp1
HG01168.hp2
HG01169.hp1
HG01169.hp2
HG01361.hp1
HG01515.hp1
HG01884.hp2
HG01934.hp2
HG01975.hp2
HG01993.hp2
HG02109.hp1
HG02109.hp2
HG02132.hp1
HG02148.hp2
HG02258.hp1
HG02280.hp1
HG02300.hp1
HG02486.hp1
HG02622.hp2
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG02717.hp1
HG02717.hp2
HG02723.hp1
HG02965.hp1
HG03139.hp1
HG03195.hp1
HG03225.hp2
HG03453.hp2
HG03486.hp2
HG03540.hp2
HG03579.hp1
HG03831.hp1
HG03942.hp1
HG04228.hp2
HG06807.hp2
NA18940.hp2
NA18954.hp1
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19010.hp2
NA19011.hp1
NA19066.hp1
NA19084.hp1
NA20129.hp2
NA20752.hp2
NA21309.hp1
 intron_variant MODIFIER c.173+722A>G
c.173+722A>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470604
chr12:113470713 G
G
 C
C
 1 a0001c0001t0001g0064
a0001c0001t0001g0064
 1 HG02818.hp2
HG02818.hp2
 intron_variant MODIFIER c.173+613C>G
c.173+613C>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470713
chr12:113470904 C
C
 T
T
 1 a0001c0001t0001g0038
a0001c0001t0001g0038
 1 HG02647.hp1
HG02647.hp1
 intron_variant MODIFIER c.173+422G>A
c.173+422G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470904
chr12:113470968 A
A
 G
G
 1 a0001c0001t0001g0041
a0001c0001t0001g0041
 1 HG02723.hp1
HG02723.hp1
 intron_variant MODIFIER c.173+358T>C
c.173+358T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113470968
chr12:113471082 C
C
 T
T
 1 a0001c0001t0008g0030
a0001c0001t0008g0030
 1 HG06807.hp2
HG06807.hp2
 intron_variant MODIFIER c.173+244G>A
c.173+244G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113471082
chr12:113471229 G
G
 A
A
 1 a0001c0001t0001g0065
a0001c0001t0001g0065
 1 NA19030.hp2
NA19030.hp2
 intron_variant MODIFIER c.173+97C>T
c.173+97C>T
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113471229
chr12:113471252 A
A
 C
C
 13 a0001c0001t0001g0023
a0001c0001t0001g0038
a0001c0001t0001g0040
others(10): Show 
a0001c0001t0001g0023
a0001c0001t0001g0038
a0001c0001t0001g0040
a0001c0001t0002g0004
a0001c0001t0002g0020
a0001c0001t0002g0021
a0001c0001t0002g0031
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
a0001c0001t0008g0030
 36 HG00735.hp1
HG01070.hp1
HG01123.hp1
others(33): Show 
HG00735.hp1
HG01070.hp1
HG01123.hp1
HG01167.hp1
HG01168.hp2
HG01169.hp1
HG01361.hp1
HG01515.hp1
HG01934.hp2
HG01975.hp2
HG01993.hp2
HG02132.hp1
HG02148.hp2
HG02258.hp1
HG02300.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG02717.hp2
HG03453.hp2
HG03486.hp2
HG03831.hp1
HG03942.hp1
HG04228.hp2
HG06807.hp2
NA18940.hp2
NA18954.hp1
NA18972.hp2
NA18984.hp2
NA19009.hp2
NA19010.hp2
NA19011.hp1
NA19066.hp1
NA19084.hp1
NA20752.hp2
NA21309.hp1
 intron_variant MODIFIER c.173+74T>G
c.173+74T>G
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113471252
chr12:113471272 A
A
 G
G
 6 a0001c0001t0001g0038
a0001c0001t0004g0010
a0001c0001t0004g0022
others(3): Show 
a0001c0001t0001g0038
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
a0001c0001t0004g0039
 12 HG01993.hp2
HG02258.hp1
HG02647.hp1
others(9): Show 
HG01993.hp2
HG02258.hp1
HG02647.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
NA21309.hp1
 intron_variant MODIFIER c.173+54T>C
c.173+54T>C
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113471272
chr12:113471279 C
C
 T
T
 4 a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
others(1): Show 
a0001c0001t0004g0010
a0001c0001t0004g0022
a0001c0001t0004g0036
a0001c0001t0004g0037
 10 HG01993.hp2
HG02258.hp1
HG02683.hp1
others(7): Show 
HG01993.hp2
HG02258.hp1
HG02683.hp1
HG02698.hp1
HG04228.hp2
NA18954.hp1
NA19010.hp2
NA19066.hp1
NA19084.hp1
NA20752.hp2
 intron_variant MODIFIER c.173+47G>A
c.173+47G>A
LHX5 ENSG00000089116.4 transcript ENST00000261731.4 protein_coding 1/4 chr12 113471279

  • GeneCards
  • OpenTarget
  • The Human Protein Atlas
  • Gnomad v4.1.0
  • PhewebJP (Japan)
  • UKB-TOPMed (UMich) (UK and US)
  • FinnGen r11 (Finland)
  • KoGES (Korean)
  • Mouse Phenotype
  • Zebra Phenotype
  • TogoVar

  • DNA
  • Satellite
  • All Snps 1.4.2
  • RC
  • snRNA
  • SINE
  • GC %
  • Simple_repeat
  • RNA
  • Retroposon
  • Unknown
  • Low_complexity
  • LINE
  • scRNA
  • CpG Islands
  • Phastcons (20 way)
  • srpRNA
  • Common Snps 1.4.2
  • rRNA
  • LTR
  • tRNA

  • Axiom Genome-Wide Array (Japonica Array V1)
  • Axiom Genome-Wide Array (Japonica Array V2)
  • Axiom Genome-Wide ASI Array V1 (ASI V1)
​

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