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geneid	8519
ensemblid	ENSG00000185885.17
hgncid	5412
symbol	IFITM1
name	interferon induced transmembrane protein 1
refseq_nuc	NM_003641.5
refseq_prot	NP_003632.4
ensembl_nuc	ENST00000408968.4
ensembl_prot	ENSP00000386187.3
mane_status	MANE Select
chr	chr11
start	314040
end	315272
strand	+
ver	v1.2
region	chr11:314040-315272
region5000	chr11:309040-320272
regionname0	IFITM1_chr11_314040_315272
regionname5000	IFITM1_chr11_309040_320272

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/1	125	33	6	16	0	6	4	0	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272
a0002	1/0	125	1	0	0	0	0	0	0	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/1	378	33	6	16	0	6	4	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272
c0002	1/0	378	1	0	0	0	0	0	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	291	34	6	16	0	6	4	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272

ghapid	grch38/ chm13v2	total	AFR	AMR	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	21	4	9	3	3	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
g0002	0/0	7	0	4	2	1	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
g0003	0/0	3	0	2	1	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
g0004	0/0	1	1	0	0	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
g0005	0/0	1	1	0	0	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
g0006	0/0	1	0	1	0	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/1	378	33	6	16	0	6	4	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272
a0002c0002	1/0	378	1	0	0	0	0	0	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	668	33	6	16	0	6	4	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272
a0002c0002t0001	1/0	668	1	0	0	0	0	0	IFITM1_chr11_309040_320272	IFITM1	copy fasta	chr11	309040	320272

actghapid	grch38/ chm13v2	total	AFR	AMR	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	20	4	9	3	3	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
a0001c0001t0001g0002	0/0	7	0	4	2	1	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
a0001c0001t0001g0003	0/0	3	0	2	1	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
a0001c0001t0001g0004	0/0	1	1	0	0	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
a0001c0001t0001g0005	0/0	1	1	0	0	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
a0001c0001t0001g0006	0/0	1	0	1	0	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
a0002c0002t0001g0001	1/0	1	0	0	0	0	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00099	hp2	a0001	c0001	t0001	g0002	EUR	GBR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00323	hp1	a0001	c0001	t0001	g0002	EUR	FIN	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00639	hp2	a0001	c0001	t0001	g0002	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00735	hp1	a0001	c0001	t0001	g0002	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00735	hp2	a0001	c0001	t0001	g0003	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG00741	hp2	a0001	c0001	t0001	g0006	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01074	hp1	a0001	c0001	t0001	g0002	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01167	hp1	a0001	c0001	t0001	g0003	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01261	hp2	a0001	c0001	t0001	g0002	AMR	CLM	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01891	hp1	a0001	c0001	t0001	g0004	AFR	ACB	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG03490	hp2	a0001	c0001	t0001	g0002	SAS	PJL	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG03579	hp2	a0001	c0001	t0001	g0005	AFR	MSL	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG04228	hp2	a0001	c0001	t0001	g0001	SAS	STU	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
NA20805	hp1	a0001	c0001	t0001	g0003	EUR	TSI	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272
homoSapiens_grch38	hp1	a0002	c0002	t0001	g0001	REF	REF	IFITM1_chr11_309040_320272	IFITM1	chr11	309040	320272

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr11:314207	C C	G G	1	a0001 a0001	33	HG00099.hp1 HG00099.hp2 HG00323.hp1 others(30): Show HG00099.hp1 HG00099.hp2 HG00323.hp1 HG00323.hp2 HG00639.hp1 HG00639.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01074.hp1 HG01074.hp2 HG01167.hp1 HG01167.hp2 HG01261.hp1 HG01261.hp2 HG01496.hp1 HG01496.hp2 HG01891.hp1 HG01891.hp2 HG02004.hp1 HG02004.hp2 HG02559.hp1 HG02559.hp2 HG03490.hp1 HG03490.hp2 HG03579.hp1 HG03579.hp2 HG04228.hp1 HG04228.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.37C>G c.37C>G	p.Pro13Ala p.Pro13Ala	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/2	168/668	37/378	13/125			chr11	314207

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr11:314473	C C	G G	2	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0002 a0001c0001t0001g0006	8	HG00099.hp2 HG00323.hp1 HG00639.hp2 others(5): Show HG00099.hp2 HG00323.hp1 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01074.hp1 HG01261.hp2 HG03490.hp2	intron_variant	MODIFIER	c.186+117C>G c.186+117C>G	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314473
chr11:314478	C C	T T	2	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0002 a0001c0001t0001g0006	8	HG00099.hp2 HG00323.hp1 HG00639.hp2 others(5): Show HG00099.hp2 HG00323.hp1 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01074.hp1 HG01261.hp2 HG03490.hp2	intron_variant	MODIFIER	c.186+122C>T c.186+122C>T	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314478
chr11:314481	C C	T T	2	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0002 a0001c0001t0001g0006	8	HG00099.hp2 HG00323.hp1 HG00639.hp2 others(5): Show HG00099.hp2 HG00323.hp1 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01074.hp1 HG01261.hp2 HG03490.hp2	intron_variant	MODIFIER	c.186+125C>T c.186+125C>T	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314481
chr11:314490	T T	C C	2	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0002 a0001c0001t0001g0006	8	HG00099.hp2 HG00323.hp1 HG00639.hp2 others(5): Show HG00099.hp2 HG00323.hp1 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01074.hp1 HG01261.hp2 HG03490.hp2	intron_variant	MODIFIER	c.186+134T>C c.186+134T>C	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314490
chr11:314500	A A	G G	2	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0002 a0001c0001t0001g0006	8	HG00099.hp2 HG00323.hp1 HG00639.hp2 others(5): Show HG00099.hp2 HG00323.hp1 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01074.hp1 HG01261.hp2 HG03490.hp2	intron_variant	MODIFIER	c.186+144A>G c.186+144A>G	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314500
chr11:314533	CT CT	C C	2	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0002 a0001c0001t0001g0006	8	HG00099.hp2 HG00323.hp1 HG00639.hp2 others(5): Show HG00099.hp2 HG00323.hp1 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01074.hp1 HG01261.hp2 HG03490.hp2	intron_variant	MODIFIER	c.186+180delT c.186+180delT	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr11	314533
chr11:314807	C C	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	HG00741.hp2 HG00741.hp2	intron_variant	MODIFIER	c.187-115C>A c.187-115C>A	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314807
chr11:314847	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01891.hp1 HG01891.hp1	intron_variant	MODIFIER	c.187-75G>A c.187-75G>A	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314847
chr11:314857	C C	CAGTGAGG others(4): Show CAGTGAGGAGCT	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01891.hp1 HG01891.hp1	intron_variant	MODIFIER	c.187-65_187-64insAG others(9): Show c.187-65_187-64insAGTGAGGAGCT	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314857
chr11:314872	C C	A A	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	HG03579.hp2 HG03579.hp2	intron_variant	MODIFIER	c.187-50C>A c.187-50C>A	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314872
chr11:314873	G G	A A	1	a0001c0001t0001g0003 a0001c0001t0001g0003	3	HG00735.hp2 HG01167.hp1 NA20805.hp1 HG00735.hp2 HG01167.hp1 NA20805.hp1	intron_variant	MODIFIER	c.187-49G>A c.187-49G>A	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1		chr11	314873

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JoGo Online Haplotype Explorer IFITM1_chr11_309040_320272

JoGo Local Haplotype Explorer (on iGV) IFITM1_chr11_309040_320272

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 2)

TTranscript Level Haplotype Info (Total: 1)

GGenebody Level Haplotype Info (Total: 6)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 2)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 2)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 7)

Haplotype Details by Sample (Haploid Level) (Total: 34)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (Exon) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 11)

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Annotation (Repeats)

Annotation (SNP Array)