Joint Open Genome and Omics Platform (JoGo)

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geneid	3117
ensemblid	ENSG00000196735.13
hgncid	4942
symbol	HLA-DQA1
name	major histocompatibility complex, class II, DQ alpha 1
refseq_nuc	NM_002122.5
refseq_prot	NP_002113.2
ensembl_nuc	ENST00000343139.11
ensembl_prot	ENSP00000339398.5
mane_status	MANE Select
chr	chr6
start	32637406
end	32643684
strand	+
ver	v1.2
region	chr6:32637406-32643684
region5000	chr6:32632406-32648684
regionname0	HLA-DQA1_chr6_32637406_32643684
regionname5000	HLA-DQA1_chr6_32632406_32648684

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	255	46	15	5	17	2	6	12	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0002	0/0	255	25	3	4	14	0	4	14	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0003	0/0	255	7	2	2	3	0	0	2	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0004	0/0	255	5	0	0	5	0	0	3	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0005	0/0	255	2	0	1	1	0	0	1	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0006	0/1	255	1	0	0	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/0	768	46	15	5	17	2	6	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
c0002	0/0	768	25	3	4	14	0	4	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
c0003	0/0	768	5	0	0	5	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
c0004	0/0	768	5	0	2	3	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
c0005	0/0	768	2	0	1	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
c0006	0/0	768	2	2	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
c0007	0/1	768	1	0	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/0	807	30	12	4	7	1	5	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
t0002	0/0	807	25	3	4	14	0	4	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
t0003	0/0	807	16	3	1	10	1	1	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
t0004	0/0	807	14	2	3	9	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
t0005	0/1	807	1	0	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	20	9	1	7	0	3	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0002	0/0	14	0	0	10	0	4	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0003	0/0	6	0	0	6	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0004	1/0	5	0	1	0	1	2	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0005	0/0	4	0	4	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0006	0/0	4	3	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0007	0/0	3	3	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0008	0/0	3	0	1	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0009	0/0	3	0	1	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0010	0/0	3	0	0	3	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0011	0/0	2	2	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0012	0/0	2	0	1	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0013	0/0	2	0	0	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0014	0/0	2	0	0	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0015	0/0	2	2	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0016	0/0	2	0	2	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0017	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0018	0/0	1	0	1	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0019	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0020	0/0	1	1	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0021	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0022	0/0	1	0	0	0	0	1	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0023	0/0	1	0	0	0	1	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0024	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
g0025	0/1	1	0	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/0	768	46	15	5	17	2	6	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0002c0002	0/0	768	25	3	4	14	0	4	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0003c0004	0/0	768	5	0	2	3	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0003c0006	0/0	768	2	2	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0004c0003	0/0	768	5	0	0	5	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0005c0005	0/0	768	2	0	1	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0006c0007	0/1	768	1	0	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/0	1574	30	12	4	7	1	5	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0001c0001t0003	0/0	1574	16	3	1	10	1	1	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0002c0002t0002	0/0	1574	25	3	4	14	0	4	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0003c0004t0004	0/0	1574	5	0	2	3	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0003c0006t0004	0/0	1574	2	2	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0004c0003t0004	0/0	1574	5	0	0	5	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0005c0005t0004	0/0	1574	2	0	1	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684
a0006c0007t0005	0/1	1574	1	0	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	copy fasta	chr6	32632406	32648684

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	20	9	1	7	0	3	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0001g0004	1/0	5	0	1	0	1	2	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0001g0015	0/0	2	2	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0001g0016	0/0	2	0	2	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0001g0020	0/0	1	1	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0003g0003	0/0	6	0	0	6	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0003g0006	0/0	4	3	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0003g0009	0/0	3	0	1	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0003g0022	0/0	1	0	0	0	0	1	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0003g0023	0/0	1	0	0	0	1	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0001c0001t0003g0024	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0002c0002t0002g0002	0/0	14	0	0	10	0	4	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0002c0002t0002g0005	0/0	4	0	4	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0002c0002t0002g0007	0/0	3	3	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0002c0002t0002g0010	0/0	3	0	0	3	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0002c0002t0002g0019	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0003c0004t0004g0008	0/0	3	0	1	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0003c0004t0004g0018	0/0	1	0	1	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0003c0004t0004g0021	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0003c0006t0004g0011	0/0	2	2	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0004c0003t0004g0013	0/0	2	0	0	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0004c0003t0004g0014	0/0	2	0	0	2	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0004c0003t0004g0017	0/0	1	0	0	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0005c0005t0004g0012	0/0	2	0	1	1	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
a0006c0007t0005g0025	0/1	1	0	0	0	0	0	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00323	hp1	a0001	c0001	t0001	g0004	EUR	FIN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG00323	hp2	a0001	c0001	t0003	g0023	EUR	FIN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG00408	hp1	a0004	c0003	t0004	g0014	EAS	CHS	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01175	hp1	a0003	c0004	t0004	g0008	AMR	PUR	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01175	hp2	a0001	c0001	t0001	g0004	AMR	PUR	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01243	hp1	a0001	c0001	t0003	g0009	AMR	PUR	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01243	hp2	a0002	c0002	t0002	g0005	AMR	PUR	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01255	hp1	a0002	c0002	t0002	g0005	AMR	CLM	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01256	hp1	a0003	c0004	t0004	g0018	AMR	CLM	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01256	hp2	a0002	c0002	t0002	g0005	AMR	CLM	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01258	hp1	a0005	c0005	t0004	g0012	AMR	CLM	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01258	hp2	a0002	c0002	t0002	g0005	AMR	CLM	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01891	hp2	a0003	c0006	t0004	g0011	AFR	ACB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01934	hp1	a0001	c0001	t0001	g0016	AMR	PEL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG01934	hp2	a0001	c0001	t0001	g0016	AMR	PEL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02129	hp1	a0003	c0004	t0004	g0021	EAS	KHV	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02129	hp2	a0001	c0001	t0003	g0009	EAS	KHV	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02145	hp1	a0002	c0002	t0002	g0007	AFR	ACB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02615	hp1	a0001	c0001	t0003	g0006	AFR	GWD	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02615	hp2	a0001	c0001	t0003	g0006	AFR	GWD	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02683	hp2	a0002	c0002	t0002	g0002	SAS	PJL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02698	hp1	a0001	c0001	t0003	g0022	SAS	PJL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02698	hp2	a0002	c0002	t0002	g0002	SAS	PJL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02976	hp1	a0001	c0001	t0001	g0020	AFR	ESN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03195	hp1	a0003	c0006	t0004	g0011	AFR	ESN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03195	hp2	a0001	c0001	t0001	g0015	AFR	ESN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03490	hp1	a0002	c0002	t0002	g0002	SAS	PJL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03490	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03516	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03516	hp2	a0002	c0002	t0002	g0007	AFR	ESN	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03831	hp1	a0002	c0002	t0002	g0002	SAS	BEB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG04228	hp1	a0001	c0001	t0001	g0004	SAS	STU	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG04228	hp2	a0001	c0001	t0001	g0004	SAS	STU	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18612	hp1	a0001	c0001	t0003	g0006	EAS	CHB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18747	hp2	a0004	c0003	t0004	g0014	EAS	CHB	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18906	hp2	a0002	c0002	t0002	g0007	AFR	YRI	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18954	hp1	a0002	c0002	t0002	g0019	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18959	hp2	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18962	hp1	a0003	c0004	t0004	g0008	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18962	hp2	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18969	hp1	a0004	c0003	t0004	g0013	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18969	hp2	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18984	hp1	a0001	c0001	t0003	g0003	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18984	hp2	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18992	hp1	a0001	c0001	t0003	g0003	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18992	hp2	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18998	hp2	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19001	hp1	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19001	hp2	a0003	c0004	t0004	g0008	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19002	hp1	a0005	c0005	t0004	g0012	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19002	hp2	a0001	c0001	t0003	g0003	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19003	hp1	a0002	c0002	t0002	g0010	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19003	hp2	a0001	c0001	t0003	g0024	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19005	hp1	a0001	c0001	t0003	g0009	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19005	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19054	hp1	a0001	c0001	t0003	g0003	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19054	hp2	a0002	c0002	t0002	g0010	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19078	hp1	a0002	c0002	t0002	g0010	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19078	hp2	a0004	c0003	t0004	g0017	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19085	hp1	a0001	c0001	t0003	g0003	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19085	hp2	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19089	hp1	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA19089	hp2	a0001	c0001	t0003	g0003	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
HG06807	hp2	a0001	c0001	t0001	g0015	AFR	USA	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18955	hp1	a0002	c0002	t0002	g0002	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA18955	hp2	a0004	c0003	t0004	g0013	EAS	JPT	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA21309	hp1	a0001	c0001	t0003	g0006	AFR	LWK	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
homoSapiens_chm13v2	hp1	a0006	c0007	t0005	g0025	REF	REF	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0004	REF	REF	HLA-DQA1_chr6_32632406_32648684	HLA-DQA1	chr6	32632406	32648684

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr6:32637480	C C	A A	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.22C>A c.22C>A	p.Leu8Met p.Leu8Met	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	75/1574	22/768	8/255	chr6	32637480
chr6:32637489	G G	A A	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.31G>A c.31G>A	p.Ala11Thr p.Ala11Thr	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	84/1574	31/768	11/255	chr6	32637489
chr6:32637507	G G	A A	2	a0004 a0005 a0004 a0005	7	HG00408.hp1 HG01258.hp1 NA18747.hp2 others(4): Show HG00408.hp1 HG01258.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	missense_variant	MODERATE	c.49G>A c.49G>A	p.Val17Met p.Val17Met	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	102/1574	49/768	17/255	chr6	32637507
chr6:32637532	A A	G G	2	a0004 a0005 a0004 a0005	7	HG00408.hp1 HG01258.hp1 NA18747.hp2 others(4): Show HG00408.hp1 HG01258.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	missense_variant	MODERATE	c.74A>G c.74A>G	p.Asp25Gly p.Asp25Gly	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	127/1574	74/768	25/255	chr6	32637532
chr6:32641328	G G	A A	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.101G>A c.101G>A	p.Cys34Tyr p.Cys34Tyr	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	154/1574	101/768	34/255	chr6	32641328
chr6:32641349	T T	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.122T>C c.122T>C	p.Phe41Ser p.Phe41Ser	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	175/1574	122/768	41/255	chr6	32641349
chr6:32641370	A A	T T	1	a0002 a0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	missense_variant	MODERATE	c.143A>T c.143A>T	p.Tyr48Phe p.Tyr48Phe	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	196/1574	143/768	48/255	chr6	32641370
chr6:32641396	C C	G G	3	a0003 a0004 a0005 a0003 a0004 a0005	14	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(11): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	missense_variant	MODERATE	c.169C>G c.169C>G	p.Gln57Glu p.Gln57Glu	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	222/1574	169/768	57/255	chr6	32641396
chr6:32641415	A A	G G	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.188A>G c.188A>G	p.Glu63Gly p.Glu63Gly	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	241/1574	188/768	63/255	chr6	32641415
chr6:32641418	G G	A A	1	a0002 a0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	missense_variant	MODERATE	c.191G>A c.191G>A	p.Arg64Lys p.Arg64Lys	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	244/1574	191/768	64/255	chr6	32641418
chr6:32641430	C C	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.203C>T c.203C>T	p.Ala68Val p.Ala68Val	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	256/1574	203/768	68/255	chr6	32641430
chr6:32641435	C C	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.208C>T c.208C>T	p.Arg70Trp p.Arg70Trp	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	261/1574	208/768	70/255	chr6	32641435
chr6:32641439	G G	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.212G>T c.212G>T	p.Trp71Leu p.Trp71Leu	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	265/1574	212/768	71/255	chr6	32641439
chr6:32641445	A A	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.218A>T c.218A>T	p.Glu73Val p.Glu73Val	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	271/1574	218/768	73/255	chr6	32641445
chr6:32641446	G G	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.219G>T c.219G>T	p.Glu73Asp p.Glu73Asp	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	272/1574	219/768	73/255	chr6	32641446
chr6:32641447	T T	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.220T>C c.220T>C	p.Phe74Leu p.Phe74Leu	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	273/1574	220/768	74/255	chr6	32641447
chr6:32641452	C C	A A	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.225C>A c.225C>A	p.Ser75Arg p.Ser75Arg	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	278/1574	225/768	75/255	chr6	32641452
chr6:32641453	A A	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.226A>C c.226A>C	p.Lys76Gln p.Lys76Gln	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	279/1574	226/768	76/255	chr6	32641453
chr6:32641459	G G	A A	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.232G>A c.232G>A	p.Gly78Arg p.Gly78Arg	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	285/1574	232/768	78/255	chr6	32641459
chr6:32641477	G G	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.250G>T c.250G>T	p.Gly84Cys p.Gly84Cys	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	303/1574	250/768	84/255	chr6	32641477
chr6:32641478	G G	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.251G>T c.251G>T	p.Gly84Val p.Gly84Val	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	304/1574	251/768	84/255	chr6	32641478
chr6:32641487	G G	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.260G>C c.260G>C	p.Arg87Thr p.Arg87Thr	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	313/1574	260/768	87/255	chr6	32641487
chr6:32641494	G G	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.267G>C c.267G>C	p.Met89Ile p.Met89Ile	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	320/1574	267/768	89/255	chr6	32641494
chr6:32641501	G G	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.274G>C c.274G>C	p.Ala92Pro p.Ala92Pro	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	327/1574	274/768	92/255	chr6	32641501
chr6:32641502	C C	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.275C>T c.275C>T	p.Ala92Val p.Ala92Val	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	328/1574	275/768	92/255	chr6	32641502
chr6:32641520	T T	G G	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.293T>G c.293T>G	p.Ile98Ser p.Ile98Ser	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	346/1574	293/768	98/255	chr6	32641520
chr6:32641522	A A	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.295A>C c.295A>C	p.Met99Leu p.Met99Leu	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	348/1574	295/768	99/255	chr6	32641522
chr6:32641535	A A	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.308A>C c.308A>C	p.Tyr103Ser p.Tyr103Ser	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	361/1574	308/768	103/255	chr6	32641535
chr6:32642029	C C	T T	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.389C>T c.389C>T	p.Thr130Ile p.Thr130Ile	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	442/1574	389/768	130/255	chr6	32642029
chr6:32642096	G G	C C	2	a0002 a0006 a0002 a0006	26	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(23): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.456G>C c.456G>C	p.Gln152His p.Gln152His	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	509/1574	456/768	152/255	chr6	32642096
chr6:32642097	T T	G G	1	a0002 a0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	missense_variant	MODERATE	c.457T>G c.457T>G	p.Ser153Ala p.Ser153Ala	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	510/1574	457/768	153/255	chr6	32642097
chr6:32642175	T T	C C	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.535T>C c.535T>C	p.Phe179Leu p.Phe179Leu	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	588/1574	535/768	179/255	chr6	32642175
chr6:32642192	T T	G G	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.552T>G c.552T>G	p.Asp184Glu p.Asp184Glu	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	605/1574	552/768	184/255	chr6	32642192
chr6:32642197	T T	G G	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.557T>G c.557T>G	p.Ile186Ser p.Ile186Ser	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	610/1574	557/768	186/255	chr6	32642197
chr6:32642232	C C	A A	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.592C>A c.592C>A	p.Gln198Lys p.Gln198Lys	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	645/1574	592/768	198/255	chr6	32642232
chr6:32642660	G G	A A	1	a0004 a0004	5	HG00408.hp1 NA18747.hp2 NA18955.hp2 others(2): Show HG00408.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19078.hp2	missense_variant	MODERATE	c.664G>A c.664G>A	p.Ala222Thr p.Ala222Thr	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/5	717/1574	664/768	222/255	chr6	32642660
chr6:32642684	A A	G G	5	a0002 a0003 a0004 others(2): Show a0002 a0003 a0004 a0005 a0006	40	HG00408.hp1 HG01175.hp1 HG01243.hp2 others(37): Show HG00408.hp1 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.688A>G c.688A>G	p.Met230Val p.Met230Val	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/5	741/1574	688/768	230/255	chr6	32642684
chr6:32642718	A A	G G	1	a0006 a0006	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.722A>G c.722A>G	p.Gln241Arg p.Gln241Arg	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/5	775/1574	722/768	241/255	chr6	32642718

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr6:32637494	C C	T T	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.36C>T c.36C>T	p.Leu12Leu p.Leu12Leu	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	89/1574	36/768	12/255	chr6	32637494
chr6:32637497	T T	C C	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.39T>C c.39T>C	p.Ala13Ala p.Ala13Ala	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	92/1574	39/768	13/255	chr6	32637497
chr6:32637518	C C	T T	1	a0004c0003 a0004c0003	5	HG00408.hp1 NA18747.hp2 NA18955.hp2 others(2): Show HG00408.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19078.hp2	synonymous_variant	LOW	c.60C>T c.60C>T	p.Pro20Pro p.Pro20Pro	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	113/1574	60/768	20/255	chr6	32637518
chr6:32641317	C C	T T	1	a0002c0002 a0002c0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	synonymous_variant	LOW	c.90C>T c.90C>T	p.His30His p.His30His	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	143/1574	90/768	30/255	chr6	32641317
chr6:32641320	T T	C C	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.93T>C c.93T>C	p.Val31Val p.Val31Val	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	146/1574	93/768	31/255	chr6	32641320
chr6:32641437	G G	T T	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.210G>T c.210G>T	p.Arg70Arg p.Arg70Arg	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	263/1574	210/768	70/255	chr6	32641437
chr6:32641476	G G	A A	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.249G>A c.249G>A	p.Gln83Gln p.Gln83Gln	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	302/1574	249/768	83/255	chr6	32641476
chr6:32641500	G G	C C	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.273G>C c.273G>C	p.Val91Val p.Val91Val	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	326/1574	273/768	91/255	chr6	32641500
chr6:32641509	C C	T T	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.282C>T c.282C>T	p.His94His p.His94His	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	335/1574	282/768	94/255	chr6	32641509
chr6:32641521	C C	T T	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.294C>T c.294C>T	p.Ile98Ile p.Ile98Ile	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/5	347/1574	294/768	98/255	chr6	32641521
chr6:32642036	T T	C C	2	a0002c0002 a0006c0007 a0002c0002 a0006c0007	26	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(23): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.396T>C c.396T>C	p.Ile132Ile p.Ile132Ile	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	449/1574	396/768	132/255	chr6	32642036
chr6:32642225	C C	A A	1	a0006c0007 a0006c0007	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.585C>A c.585C>A	p.Gly195Gly p.Gly195Gly	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/5	638/1574	585/768	195/255	chr6	32642225
chr6:32642659	T T	C C	5	a0003c0004 a0003c0006 a0004c0003 others(2): Show a0003c0004 a0003c0006 a0004c0003 a0005c0005 a0006c0007	15	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(12): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.663T>C c.663T>C	p.Cys221Cys p.Cys221Cys	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/5	716/1574	663/768	221/255	chr6	32642659
chr6:32642752	A A	G G	1	a0003c0006 a0003c0006	2	HG01891.hp2 HG03195.hp1 HG01891.hp2 HG03195.hp1	synonymous_variant	LOW	c.756A>G c.756A>G	p.Gln252Gln p.Gln252Gln	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/5	809/1574	756/768	252/255	chr6	32642752
chr6:32642758	A A	C C	2	a0002c0002 a0006c0007 a0002c0002 a0006c0007	26	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(23): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.762A>C c.762A>C	p.Pro254Pro p.Pro254Pro	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/5	815/1574	762/768	254/255	chr6	32642758

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr6:32637412	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-47A>G c.-47A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5		chr6	32637412
chr6:32637420	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	5_prime_UTR_variant	MODIFIER	c.-39G>A c.-39G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	39	chr6	32637420
chr6:32637430	C C	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	5_prime_UTR_variant	MODIFIER	c.-29C>G c.-29C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	29	chr6	32637430
chr6:32637439	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	5_prime_UTR_variant	MODIFIER	c.-20G>A c.-20G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	20	chr6	32637439
chr6:32642779	G G	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.15G>T c.15G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/5	15	chr6	32642779
chr6:32642972	G G	A A	1	a0002c0002t0002 a0002c0002t0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.41G>A c.41G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	208	chr6	32642972
chr6:32642980	A A	G G	5	a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 others(2): Show a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 a0005c0005t0004 a0006c0007t0005	15	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(12): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.49A>G c.49A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	216	chr6	32642980
chr6:32642992	A A	C C	5	a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 others(2): Show a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 a0005c0005t0004 a0006c0007t0005	15	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(12): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.61A>C c.61A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	228	chr6	32642992
chr6:32643004	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.73C>T c.73C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	240	chr6	32643004
chr6:32643009	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.78C>T c.78C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	245	chr6	32643009
chr6:32643018	G G	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.87G>C c.87G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	254	chr6	32643018
chr6:32643048	A A	G G	2	a0002c0002t0002 a0006c0007t0005 a0002c0002t0002 a0006c0007t0005	26	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(23): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.117A>G c.117A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	284	chr6	32643048
chr6:32643064	T T	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.133T>C c.133T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	300	chr6	32643064
chr6:32643069	C C	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.138C>G c.138C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	305	chr6	32643069
chr6:32643080	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.149G>A c.149G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	316	chr6	32643080
chr6:32643081	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.150C>T c.150C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	317	chr6	32643081
chr6:32643091	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.160C>T c.160C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	327	chr6	32643091
chr6:32643092	C C	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.161C>G c.161C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	328	chr6	32643092
chr6:32643110	C C	T T	4	a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 others(1): Show a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 a0005c0005t0004	14	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(11): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	3_prime_UTR_variant	MODIFIER	c.179C>T c.179C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	346	chr6	32643110
chr6:32643115	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.184A>G c.184A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	351	chr6	32643115
chr6:32643116	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.185C>A c.185C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	352	chr6	32643116
chr6:32643120	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.189C>A c.189C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	356	chr6	32643120
chr6:32643131	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.200C>T c.200C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	367	chr6	32643131
chr6:32643158	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.227A>G c.227A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	394	chr6	32643158
chr6:32643169	A A	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.238A>T c.238A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	405	chr6	32643169
chr6:32643170	A A	C C	1	a0001c0001t0003 a0001c0001t0003	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.239A>C c.239A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	406	chr6	32643170
chr6:32643173	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.242A>G c.242A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	409	chr6	32643173
chr6:32643174	C C	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.243C>G c.243C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	410	chr6	32643174
chr6:32643183	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.252G>A c.252G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	419	chr6	32643183
chr6:32643195	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.264G>A c.264G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	431	chr6	32643195
chr6:32643199	A A	C C	1	a0002c0002t0002 a0002c0002t0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.268A>C c.268A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	435	chr6	32643199
chr6:32643226	A A	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.295A>T c.295A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	462	chr6	32643226
chr6:32643235	A A	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.304A>T c.304A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	471	chr6	32643235
chr6:32643244	T T	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.313T>C c.313T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	480	chr6	32643244
chr6:32643252	T T	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.321T>C c.321T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	488	chr6	32643252
chr6:32643263	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.332C>A c.332C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	499	chr6	32643263
chr6:32643277	T T	C C	4	a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 others(1): Show a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 a0005c0005t0004	14	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(11): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	3_prime_UTR_variant	MODIFIER	c.346T>C c.346T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	513	chr6	32643277
chr6:32643306	T T	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.375T>C c.375T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	542	chr6	32643306
chr6:32643307	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.376A>G c.376A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	543	chr6	32643307
chr6:32643315	T T	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.384T>G c.384T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	551	chr6	32643315
chr6:32643317	A A	T T	1	a0002c0002t0002 a0002c0002t0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.386A>T c.386A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	553	chr6	32643317
chr6:32643322	G G	T T	4	a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 others(1): Show a0003c0004t0004 a0003c0006t0004 a0004c0003t0004 a0005c0005t0004	14	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(11): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	3_prime_UTR_variant	MODIFIER	c.391G>T c.391G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	558	chr6	32643322
chr6:32643323	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.392G>A c.392G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	559	chr6	32643323
chr6:32643324	T T	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.393T>G c.393T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	560	chr6	32643324
chr6:32643330	T T	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.399T>C c.399T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	566	chr6	32643330
chr6:32643331	A A	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.400A>T c.400A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	567	chr6	32643331
chr6:32643340	T T	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.409T>G c.409T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	576	chr6	32643340
chr6:32643345	T T	C C	1	a0002c0002t0002 a0002c0002t0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.414T>C c.414T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	581	chr6	32643345
chr6:32643351	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.420C>A c.420C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	587	chr6	32643351
chr6:32643358	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.427C>A c.427C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	594	chr6	32643358
chr6:32643370	T T	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.439T>G c.439T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	606	chr6	32643370
chr6:32643393	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.462C>A c.462C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	629	chr6	32643393
chr6:32643399	G G	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.468G>C c.468G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	635	chr6	32643399
chr6:32643418	T T	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.487T>C c.487T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	654	chr6	32643418
chr6:32643438	C C	T T	1	a0002c0002t0002 a0002c0002t0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.507C>T c.507C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	674	chr6	32643438
chr6:32643439	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.508A>G c.508A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	675	chr6	32643439
chr6:32643452	G G	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.521G>T c.521G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	688	chr6	32643452
chr6:32643478	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.547C>T c.547C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	714	chr6	32643478
chr6:32643498	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.567C>A c.567C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	734	chr6	32643498
chr6:32643512	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.581A>G c.581A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	748	chr6	32643512
chr6:32643522	A A	T T	1	a0002c0002t0002 a0002c0002t0002	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.591A>T c.591A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	758	chr6	32643522
chr6:32643525	G G	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.594G>C c.594G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	761	chr6	32643525
chr6:32643532	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.601C>T c.601C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	768	chr6	32643532
chr6:32643538	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.607C>T c.607C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	774	chr6	32643538
chr6:32643544	T T	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.613T>A c.613T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	780	chr6	32643544
chr6:32643564	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.633G>A c.633G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	800	chr6	32643564
chr6:32643567	C C	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.636C>T c.636C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	803	chr6	32643567
chr6:32643568	C C	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.637C>A c.637C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	804	chr6	32643568
chr6:32643574	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.643A>G c.643A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	810	chr6	32643574
chr6:32643596	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.665G>A c.665G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	832	chr6	32643596
chr6:32643599	G G	A A	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.668G>A c.668G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	835	chr6	32643599
chr6:32643624	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.693A>G c.693A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	860	chr6	32643624
chr6:32643625	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.694A>G c.694A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	861	chr6	32643625
chr6:32643629	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.698A>G c.698A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	865	chr6	32643629
chr6:32643637	G G	C C	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.706G>C c.706G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	873	chr6	32643637
chr6:32643663	A A	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.732A>T c.732A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	899	chr6	32643663
chr6:32643667	A A	G G	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.736A>G c.736A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	903	chr6	32643667
chr6:32643673	G G	T T	1	a0006c0007t0005 a0006c0007t0005	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.742G>T c.742G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	5/5	909	chr6	32643673

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr6:32637548	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	splice_region_variant&intron_variant	LOW	c.82+8C>T c.82+8C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637548
chr6:32637576	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+36A>G c.82+36A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637576
chr6:32637579	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+39A>G c.82+39A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637579
chr6:32637581	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+41C>G c.82+41C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637581
chr6:32637584	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+44T>G c.82+44T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637584
chr6:32637594	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+54G>C c.82+54G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637594
chr6:32637603	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+63T>G c.82+63T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637603
chr6:32637623	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+83C>T c.82+83C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637623
chr6:32637643	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+103C>T c.82+103C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637643
chr6:32637646	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+106T>C c.82+106T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637646
chr6:32637660	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+120C>G c.82+120C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637660
chr6:32637662	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+122A>T c.82+122A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637662
chr6:32637674	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+134A>G c.82+134A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637674
chr6:32637701	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+161C>T c.82+161C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637701
chr6:32637724	C C	G G	7	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(4): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0010	19	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(16): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+184C>G c.82+184C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637724
chr6:32637731	G G	T T	7	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(4): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0010	19	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(16): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+191G>T c.82+191G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637731
chr6:32637735	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+195T>C c.82+195T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637735
chr6:32637748	C C	T T	8	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(5): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0010 a0006c0007t0005g0025	20	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(17): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+208C>T c.82+208C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637748
chr6:32637766	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+226A>G c.82+226A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637766
chr6:32637780	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+240C>T c.82+240C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637780
chr6:32637781	G G	A A	17	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(14): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	40	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(37): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02698.hp1 HG03195.hp1 HG03516.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA18984.hp1 NA18992.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp1 NA19089.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+241G>A c.82+241G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637781
chr6:32637801	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+261G>A c.82+261G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637801
chr6:32637806	A A	G G	9	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(6): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0010 a0003c0004t0004g0008 a0003c0004t0004g0018	23	HG00323.hp2 HG01175.hp1 HG01243.hp1 others(20): Show HG00323.hp2 HG01175.hp1 HG01243.hp1 HG01256.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18962.hp1 NA18984.hp1 NA18992.hp1 NA19001.hp2 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+266A>G c.82+266A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637806
chr6:32637843	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+303G>A c.82+303G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637843
chr6:32637871	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+331A>G c.82+331A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637871
chr6:32637878	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+338G>A c.82+338G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637878
chr6:32637922	G G	A A	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.82+382G>A c.82+382G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637922
chr6:32637928	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+388G>T c.82+388G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637928
chr6:32637931	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+391G>A c.82+391G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637931
chr6:32637936	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+396A>C c.82+396A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637936
chr6:32637937	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+397T>G c.82+397T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637937
chr6:32637946	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+406C>G c.82+406C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637946
chr6:32637961	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+421G>A c.82+421G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637961
chr6:32637977	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+437T>A c.82+437T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637977
chr6:32637979	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+439A>G c.82+439A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637979
chr6:32637982	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+442T>A c.82+442T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637982
chr6:32637984	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+444T>A c.82+444T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637984
chr6:32637990	G G	A A	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.82+450G>A c.82+450G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637990
chr6:32637990	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+450G>T c.82+450G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32637990
chr6:32638012	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+472C>A c.82+472C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638012
chr6:32638012	C C	T T	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.82+472C>T c.82+472C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638012
chr6:32638023	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+483A>G c.82+483A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638023
chr6:32638084	A A	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+544A>G c.82+544A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638084
chr6:32638140	C C	T T	2	a0001c0001t0003g0003 a0001c0001t0003g0024 a0001c0001t0003g0003 a0001c0001t0003g0024	7	NA18984.hp1 NA18992.hp1 NA19002.hp2 others(4): Show NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19054.hp1 NA19085.hp1 NA19089.hp2	intron_variant	MODIFIER	c.82+600C>T c.82+600C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638140
chr6:32638143	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+603G>A c.82+603G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638143
chr6:32638160	G G	T T	1	a0003c0004t0004g0021 a0003c0004t0004g0021	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.82+620G>T c.82+620G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638160
chr6:32638166	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+626G>A c.82+626G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638166
chr6:32638173	C C	T T	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+633C>T c.82+633C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638173
chr6:32638225	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+685C>T c.82+685C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638225
chr6:32638228	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+688A>G c.82+688A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638228
chr6:32638253	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+713A>T c.82+713A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638253
chr6:32638265	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+725G>A c.82+725G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638265
chr6:32638269	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+729A>C c.82+729A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638269
chr6:32638299	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+759A>C c.82+759A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638299
chr6:32638305	A A	T T	1	a0004c0003t0004g0017 a0004c0003t0004g0017	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.82+765A>T c.82+765A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638305
chr6:32638308	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+768A>T c.82+768A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638308
chr6:32638356	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+816C>A c.82+816C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638356
chr6:32638367	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+827A>G c.82+827A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638367
chr6:32638399	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+859A>T c.82+859A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638399
chr6:32638452	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+912A>C c.82+912A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638452
chr6:32638461	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+921T>C c.82+921T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638461
chr6:32638462	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+922G>A c.82+922G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638462
chr6:32638522	T T	G G	9	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(6): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0002 a0002c0002t0002g0010 a0002c0002t0002g0019	34	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(31): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG03490.hp1 HG03831.hp1 NA18612.hp1 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp1 NA19085.hp2 NA19089.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+982T>G c.82+982T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638522
chr6:32638537	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+997C>T c.82+997C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638537
chr6:32638538	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+998A>G c.82+998A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638538
chr6:32638547	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1007T>C c.82+1007T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638547
chr6:32638548	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1008G>A c.82+1008G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638548
chr6:32638580	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1040C>A c.82+1040C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638580
chr6:32638591	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1051C>T c.82+1051C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638591
chr6:32638592	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1052A>G c.82+1052A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638592
chr6:32638599	T T	C C	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+1059T>C c.82+1059T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638599
chr6:32638603	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1063T>G c.82+1063T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638603
chr6:32638617	C C	T T	1	a0003c0006t0004g0011 a0003c0006t0004g0011	2	HG01891.hp2 HG03195.hp1 HG01891.hp2 HG03195.hp1	intron_variant	MODIFIER	c.82+1077C>T c.82+1077C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638617
chr6:32638629	G G	A A	7	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(4): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0021 a0006c0007t0005g0025	27	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(24): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02129.hp1 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1089G>A c.82+1089G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638629
chr6:32638666	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1126G>A c.82+1126G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638666
chr6:32638667	G G	A A	20	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(17): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	56	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(53): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp1 NA19085.hp2 NA19089.hp1 NA19089.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1127G>A c.82+1127G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638667
chr6:32638669	G G	T T	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1129G>T c.82+1129G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638669
chr6:32638678	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1138A>G c.82+1138A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638678
chr6:32638686	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1146G>A c.82+1146G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638686
chr6:32638697	G G	GCAAGGAA others(1): Show GCAAGGAAC	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1158_82+1159ins others(8): Show c.82+1158_82+1159insAAGGAACC	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32638697
chr6:32638698	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1158C>A c.82+1158C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638698
chr6:32638699	G G	A A	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1159G>A c.82+1159G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638699
chr6:32638699	G G	GAGGA GAGGA	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.82+1176_82+1179dup others(4): Show c.82+1176_82+1179dupAGGA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32638699
chr6:32638699	G G	GAGGAAGG others(1): Show GAGGAAGGA	5	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0022 others(2): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	13	HG00323.hp2 HG02615.hp1 HG02615.hp2 others(10): Show HG00323.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+1172_82+1179dup others(8): Show c.82+1172_82+1179dupAGGAAGGA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32638699
chr6:32638699	G G	GAGGAAGG others(5): Show GAGGAAGGAAGGA	1	a0001c0001t0003g0009 a0001c0001t0003g0009	3	HG01243.hp1 HG02129.hp2 NA19005.hp1 HG01243.hp1 HG02129.hp2 NA19005.hp1	intron_variant	MODIFIER	c.82+1168_82+1179dup others(12): Show c.82+1168_82+1179dupAGGAAGGAAGGA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32638699
chr6:32638702	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1162G>A c.82+1162G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638702
chr6:32638713	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1173G>A c.82+1173G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638713
chr6:32638717	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1177G>A c.82+1177G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638717
chr6:32638719	AGAAG AGAAG	A A	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1195_82+1198del others(4): Show c.82+1195_82+1198delGGAA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32638719
chr6:32638738	A A	AGAAGGGG others(14): Show AGAAGGGGAAGGGAAGGGAAGG	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1198_82+1199ins others(21): Show c.82+1198_82+1199insGAAGGGGAAGGGAAGGGAAGG	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638738
chr6:32638742	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1202A>G c.82+1202A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638742
chr6:32638743	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1203A>G c.82+1203A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638743
chr6:32638747	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1207A>G c.82+1207A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638747
chr6:32638764	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1224G>A c.82+1224G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638764
chr6:32638769	G G	GAAGGAAA others(24): Show GAAGGAAAAAAGAAAAAGAAAGAAAAAAGAAA	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1229_82+1230ins others(31): Show c.82+1229_82+1230insAAGGAAAAAAGAAAAAGAAAGAAAAAAGAA A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638769
chr6:32638770	G G	A A	19	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(16): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	55	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(52): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp1 NA19085.hp2 NA19089.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+1230G>A c.82+1230G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638770
chr6:32638782	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1242C>A c.82+1242C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638782
chr6:32638783	A A	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1243A>G c.82+1243A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638783
chr6:32638792	G G	A A	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1252G>A c.82+1252G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638792
chr6:32638799	G G	GAAAGAAA others(4): Show GAAAGAAAGAAA	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1261_82+1262ins others(11): Show c.82+1261_82+1262insAGAAAGAAAAA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32638799
chr6:32638802	G G	A A	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.82+1262G>A c.82+1262G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638802
chr6:32638807	A A	G G	4	a0002c0002t0002g0002 a0002c0002t0002g0010 a0002c0002t0002g0019 others(1): Show a0002c0002t0002g0002 a0002c0002t0002g0010 a0002c0002t0002g0019 a0006c0007t0005g0025	19	HG02683.hp2 HG02698.hp2 HG03490.hp1 others(16): Show HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03831.hp1 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1267A>G c.82+1267A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638807
chr6:32638820	AT AT	A A	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.82+1282delT c.82+1282delT	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32638820
chr6:32638840	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1300C>G c.82+1300C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638840
chr6:32638844	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1304C>T c.82+1304C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638844
chr6:32638850	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1310C>T c.82+1310C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638850
chr6:32638858	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1318G>A c.82+1318G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638858
chr6:32638866	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1326C>A c.82+1326C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638866
chr6:32638881	C C	G G	12	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(9): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0005 a0002c0002t0002g0007 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	30	HG00323.hp2 HG00408.hp1 HG01243.hp1 others(27): Show HG00323.hp2 HG00408.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02698.hp1 HG03516.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18969.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19078.hp2 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+1341C>G c.82+1341C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638881
chr6:32638888	C C	T T	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1348C>T c.82+1348C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638888
chr6:32638899	T T	C C	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1359T>C c.82+1359T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638899
chr6:32638905	C C	G G	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+1365C>G c.82+1365C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638905
chr6:32638914	T T	C C	1	a0001c0001t0003g0022 a0001c0001t0003g0022	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.82+1374T>C c.82+1374T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638914
chr6:32638914	T T	G G	5	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(2): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0023 a0001c0001t0003g0024	15	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(12): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+1374T>G c.82+1374T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638914
chr6:32638918	T T	C C	6	a0002c0002t0002g0005 a0002c0002t0002g0007 a0004c0003t0004g0013 others(3): Show a0002c0002t0002g0005 a0002c0002t0002g0007 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	14	HG00408.hp1 HG01243.hp2 HG01255.hp1 others(11): Show HG00408.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.82+1378T>C c.82+1378T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638918
chr6:32638924	A A	G G	16	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(13): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0021 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	49	HG00323.hp2 HG00408.hp1 HG01243.hp1 others(46): Show HG00323.hp2 HG00408.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp1 NA19085.hp2 NA19089.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.82+1384A>G c.82+1384A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638924
chr6:32638934	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1394C>T c.82+1394C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638934
chr6:32638944	G G	T T	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1404G>T c.82+1404G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638944
chr6:32638945	A A	G G	1	a0001c0001t0001g0016 a0001c0001t0001g0016	2	HG01934.hp1 HG01934.hp2 HG01934.hp1 HG01934.hp2	intron_variant	MODIFIER	c.82+1405A>G c.82+1405A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638945
chr6:32638965	A A	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1425A>G c.82+1425A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638965
chr6:32638979	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1439G>A c.82+1439G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638979
chr6:32638996	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1456G>T c.82+1456G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32638996
chr6:32639016	T T	C C	7	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 others(4): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	13	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(10): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.82+1476T>C c.82+1476T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639016
chr6:32639017	T T	C C	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1477T>C c.82+1477T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639017
chr6:32639025	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1485T>C c.82+1485T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639025
chr6:32639032	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1492T>C c.82+1492T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639032
chr6:32639042	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1502G>A c.82+1502G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639042
chr6:32639057	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1517A>C c.82+1517A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639057
chr6:32639070	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1530G>A c.82+1530G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639070
chr6:32639072	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1532A>G c.82+1532A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639072
chr6:32639088	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1548G>C c.82+1548G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639088
chr6:32639101	G G	A A	19	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(16): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	53	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(50): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19078.hp2 NA19085.hp1 NA19085.hp2 NA19089.hp1 NA19089.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1561G>A c.82+1561G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639101
chr6:32639108	G G	A A	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1568G>A c.82+1568G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639108
chr6:32639108	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1568G>T c.82+1568G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639108
chr6:32639135	A A	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1595A>G c.82+1595A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639135
chr6:32639164	T T	C C	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1624T>C c.82+1624T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639164
chr6:32639172	T T	C C	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1632T>C c.82+1632T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639172
chr6:32639183	A A	T T	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.82+1643A>T c.82+1643A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639183
chr6:32639185	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1645T>C c.82+1645T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639185
chr6:32639186	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1646G>A c.82+1646G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639186
chr6:32639193	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1653G>A c.82+1653G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639193
chr6:32639199	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1659G>A c.82+1659G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639199
chr6:32639201	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1661G>A c.82+1661G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639201
chr6:32639231	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1691G>T c.82+1691G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639231
chr6:32639240	T T	A A	1	a0002c0002t0002g0005 a0002c0002t0002g0005	4	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(1): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2	intron_variant	MODIFIER	c.82+1700T>A c.82+1700T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639240
chr6:32639242	C C	G G	11	a0002c0002t0002g0002 a0002c0002t0002g0010 a0002c0002t0002g0019 others(8): Show a0002c0002t0002g0002 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	32	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(29): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG02683.hp2 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03831.hp1 NA18747.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.82+1702C>G c.82+1702C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639242
chr6:32639249	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1709A>G c.82+1709A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639249
chr6:32639265	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1725G>A c.82+1725G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639265
chr6:32639269	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1729A>T c.82+1729A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639269
chr6:32639271	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1731T>C c.82+1731T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639271
chr6:32639278	T T	C C	4	a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 others(1): Show a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	7	HG00408.hp1 HG01258.hp1 NA18747.hp2 others(4): Show HG00408.hp1 HG01258.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.82+1738T>C c.82+1738T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639278
chr6:32639314	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1774A>G c.82+1774A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639314
chr6:32639347	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1807T>C c.82+1807T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639347
chr6:32639363	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1823T>C c.82+1823T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639363
chr6:32639364	G G	A A	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1824G>A c.82+1824G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639364
chr6:32639374	A A	G G	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1834A>G c.82+1834A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639374
chr6:32639381	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1841T>C c.82+1841T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639381
chr6:32639383	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1843C>A c.82+1843C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639383
chr6:32639392	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1852A>G c.82+1852A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639392
chr6:32639398	G G	A A	6	a0003c0004t0004g0021 a0004c0003t0004g0013 a0004c0003t0004g0014 others(3): Show a0003c0004t0004g0021 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	9	HG00408.hp1 HG01258.hp1 HG02129.hp1 others(6): Show HG00408.hp1 HG01258.hp1 HG02129.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1858G>A c.82+1858G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639398
chr6:32639423	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82+1883T>C c.82+1883T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639423
chr6:32639432	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1878A>G c.83-1878A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639432
chr6:32639441	G G	T T	1	a0003c0004t0004g0021 a0003c0004t0004g0021	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.83-1869G>T c.83-1869G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639441
chr6:32639444	C C	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-1866C>G c.83-1866C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639444
chr6:32639447	C C	T T	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-1863C>T c.83-1863C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639447
chr6:32639448	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1862G>T c.83-1862G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639448
chr6:32639453	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1857G>A c.83-1857G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639453
chr6:32639474	C C	T T	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1836C>T c.83-1836C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639474
chr6:32639493	A A	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-1817A>G c.83-1817A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639493
chr6:32639497	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1813G>C c.83-1813G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639497
chr6:32639504	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1806G>A c.83-1806G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639504
chr6:32639519	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1791C>A c.83-1791C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639519
chr6:32639526	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1784T>A c.83-1784T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639526
chr6:32639526	T T	C C	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.83-1784T>C c.83-1784T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639526
chr6:32639542	C C	T T	1	a0003c0006t0004g0011 a0003c0006t0004g0011	2	HG01891.hp2 HG03195.hp1 HG01891.hp2 HG03195.hp1	intron_variant	MODIFIER	c.83-1768C>T c.83-1768C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639542
chr6:32639548	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1762G>A c.83-1762G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639548
chr6:32639579	G G	A A	4	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 others(1): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011	7	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(4): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.83-1731G>A c.83-1731G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639579
chr6:32639612	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1698T>C c.83-1698T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639612
chr6:32639626	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1684A>G c.83-1684A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639626
chr6:32639629	A A	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-1681A>G c.83-1681A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639629
chr6:32639634	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1676G>A c.83-1676G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639634
chr6:32639662	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1648G>C c.83-1648G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639662
chr6:32639667	G G	T T	3	a0002c0002t0002g0002 a0002c0002t0002g0010 a0002c0002t0002g0019 a0002c0002t0002g0002 a0002c0002t0002g0010 a0002c0002t0002g0019	18	HG02683.hp2 HG02698.hp2 HG03490.hp1 others(15): Show HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03831.hp1 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.83-1643G>T c.83-1643G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639667
chr6:32639676	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1634C>T c.83-1634C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639676
chr6:32639693	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1617A>T c.83-1617A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639693
chr6:32639700	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1610G>A c.83-1610G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639700
chr6:32639715	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1595G>C c.83-1595G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639715
chr6:32639733	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1577G>A c.83-1577G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639733
chr6:32639736	C C	T T	4	a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 others(1): Show a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	7	HG00408.hp1 HG01258.hp1 NA18747.hp2 others(4): Show HG00408.hp1 HG01258.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.83-1574C>T c.83-1574C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639736
chr6:32639739	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1571T>C c.83-1571T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639739
chr6:32639747	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1563T>C c.83-1563T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639747
chr6:32639749	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1561T>C c.83-1561T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639749
chr6:32639766	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1544A>C c.83-1544A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639766
chr6:32639772	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1538A>T c.83-1538A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639772
chr6:32639781	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1529A>G c.83-1529A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639781
chr6:32639784	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1526C>T c.83-1526C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639784
chr6:32639787	CATGTATT others(9): Show CATGTATTCCACATATA	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1522_83-1507del others(16): Show c.83-1522_83-1507delATGTATTCCACATATA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639787
chr6:32639806	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1504C>T c.83-1504C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639806
chr6:32639807	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1503A>G c.83-1503A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639807
chr6:32639816	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1494C>T c.83-1494C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639816
chr6:32639828	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1482A>G c.83-1482A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639828
chr6:32639834	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1476G>T c.83-1476G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639834
chr6:32639861	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1449A>G c.83-1449A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639861
chr6:32639873	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1437C>A c.83-1437C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639873
chr6:32639875	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1435A>T c.83-1435A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639875
chr6:32639889	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1421G>A c.83-1421G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639889
chr6:32639897	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1413G>A c.83-1413G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639897
chr6:32639927	C C	CA CA	10	a0002c0002t0002g0005 a0002c0002t0002g0007 a0003c0004t0004g0008 others(7): Show a0002c0002t0002g0005 a0002c0002t0002g0007 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	21	HG00408.hp1 HG01175.hp1 HG01243.hp2 others(18): Show HG00408.hp1 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02145.hp1 HG03195.hp1 HG03516.hp2 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.83-1381dupA c.83-1381dupA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32639927
chr6:32639945	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1365G>A c.83-1365G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639945
chr6:32639951	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1359A>G c.83-1359A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639951
chr6:32639952	C C	T T	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1358C>T c.83-1358C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639952
chr6:32639958	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1352G>A c.83-1352G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639958
chr6:32639960	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1350T>C c.83-1350T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639960
chr6:32639973	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1337T>C c.83-1337T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639973
chr6:32639979	CA CA	C C	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-1326delA c.83-1326delA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32639979
chr6:32639990	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1320T>C c.83-1320T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32639990
chr6:32640003	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1307C>T c.83-1307C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640003
chr6:32640044	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1266G>A c.83-1266G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640044
chr6:32640052	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1258A>G c.83-1258A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640052
chr6:32640082	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1228C>T c.83-1228C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640082
chr6:32640084	A A	T T	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-1226A>T c.83-1226A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640084
chr6:32640105	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1205G>A c.83-1205G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640105
chr6:32640113	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1197C>G c.83-1197C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640113
chr6:32640149	T T	G G	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1161T>G c.83-1161T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640149
chr6:32640150	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1160C>T c.83-1160C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640150
chr6:32640168	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1142T>A c.83-1142T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640168
chr6:32640195	C C	T T	3	a0001c0001t0001g0015 a0001c0001t0001g0020 a0006c0007t0005g0025 a0001c0001t0001g0015 a0001c0001t0001g0020 a0006c0007t0005g0025	4	HG02976.hp1 HG03195.hp2 HG06807.hp2 others(1): Show HG02976.hp1 HG03195.hp2 HG06807.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1115C>T c.83-1115C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640195
chr6:32640200	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1110T>G c.83-1110T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640200
chr6:32640209	G G	C C	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1101G>C c.83-1101G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640209
chr6:32640215	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1095T>A c.83-1095T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640215
chr6:32640217	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1093A>G c.83-1093A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640217
chr6:32640237	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1073T>C c.83-1073T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640237
chr6:32640264	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1046A>C c.83-1046A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640264
chr6:32640283	A A	G G	17	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(14): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0005 a0002c0002t0002g0007 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	38	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(35): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02698.hp1 HG03195.hp1 HG03516.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA18984.hp1 NA18992.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19078.hp2 NA19085.hp1 NA19089.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-1027A>G c.83-1027A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640283
chr6:32640316	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-994T>C c.83-994T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640316
chr6:32640319	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-991G>T c.83-991G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640319
chr6:32640373	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-937G>A c.83-937G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640373
chr6:32640375	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-935T>C c.83-935T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640375
chr6:32640401	CA CA	C C	4	a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 others(1): Show a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	7	HG00408.hp1 HG01258.hp1 NA18747.hp2 others(4): Show HG00408.hp1 HG01258.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.83-903delA c.83-903delA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640401
chr6:32640403	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-907A>G c.83-907A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640403
chr6:32640404	A A	G G	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-906A>G c.83-906A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640404
chr6:32640407	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-903A>T c.83-903A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640407
chr6:32640416	T T	C C	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-894T>C c.83-894T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640416
chr6:32640434	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-876T>C c.83-876T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640434
chr6:32640436	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-874G>A c.83-874G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640436
chr6:32640437	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-873T>C c.83-873T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640437
chr6:32640439	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-871C>T c.83-871C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640439
chr6:32640444	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-866T>C c.83-866T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640444
chr6:32640499	A A	G G	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.83-811A>G c.83-811A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640499
chr6:32640502	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-808T>G c.83-808T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640502
chr6:32640504	T T	TTTAATTT others(17): Show TTTAATTTACCTGAGTCCTCAAGTG	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-806_83-805insTT others(22): Show c.83-806_83-805insTTAATTTACCTGAGTCCTCAAGTG	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640504
chr6:32640505	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-805G>A c.83-805G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640505
chr6:32640505	G G	GA GA	10	a0002c0002t0002g0005 a0002c0002t0002g0007 a0003c0004t0004g0008 others(7): Show a0002c0002t0002g0005 a0002c0002t0002g0007 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	21	HG00408.hp1 HG01175.hp1 HG01243.hp2 others(18): Show HG00408.hp1 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02145.hp1 HG03195.hp1 HG03516.hp2 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.83-804dupA c.83-804dupA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640505
chr6:32640517	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-793G>A c.83-793G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640517
chr6:32640526	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-784T>C c.83-784T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640526
chr6:32640527	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-783G>A c.83-783G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640527
chr6:32640545	T T	C C	17	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(14): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0005 a0002c0002t0002g0007 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	38	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(35): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02698.hp1 HG03195.hp1 HG03516.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA18984.hp1 NA18992.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19078.hp2 NA19085.hp1 NA19089.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-765T>C c.83-765T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640545
chr6:32640554	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-756C>G c.83-756C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640554
chr6:32640557	GA GA	G G	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.83-739delA c.83-739delA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640557
chr6:32640557	GAAA GAAA	G G	7	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 others(4): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0005c0005t0004g0012	13	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(10): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1	intron_variant	MODIFIER	c.83-741_83-739delAA others(1): Show c.83-741_83-739delAAA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640557
chr6:32640557	GAAAA GAAAA	G G	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0004c0003t0004g0017 a0002c0002t0002g0005 a0002c0002t0002g0007 a0004c0003t0004g0017	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 NA19078.hp2	intron_variant	MODIFIER	c.83-742_83-739delAA others(2): Show c.83-742_83-739delAAAA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640557
chr6:32640573	G G	A A	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-737G>A c.83-737G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640573
chr6:32640617	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-693T>C c.83-693T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640617
chr6:32640648	C C	A A	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-662C>A c.83-662C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640648
chr6:32640658	T T	C C	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.83-652T>C c.83-652T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640658
chr6:32640731	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-579A>T c.83-579A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640731
chr6:32640744	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-566C>A c.83-566C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640744
chr6:32640747	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-563T>C c.83-563T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640747
chr6:32640773	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-537A>C c.83-537A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640773
chr6:32640809	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-501C>T c.83-501C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640809
chr6:32640812	T T	A A	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-498T>A c.83-498T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640812
chr6:32640812	T T	TA TA	9	a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0003g0003 others(6): Show a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0002c0002t0002g0002 a0002c0002t0002g0010 a0003c0006t0004g0011	55	HG00408.hp2 HG01243.hp1 HG01255.hp2 others(52): Show HG00408.hp2 HG01243.hp1 HG01255.hp2 HG01891.hp1 HG01891.hp2 HG02129.hp2 HG02145.hp2 HG02451.hp1 HG02451.hp2 HG02615.hp1 HG02615.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02976.hp2 HG03195.hp1 HG03195.hp2 HG03490.hp1 HG03490.hp2 HG03516.hp1 HG03831.hp1 HG03831.hp2 HG06807.hp1 HG06807.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18954.hp2 NA18955.hp1 NA18959.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18992.hp2 NA18998.hp1 NA18998.hp2 NA19001.hp1 NA19002.hp2 NA19003.hp1 NA19005.hp1 NA19005.hp2 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp1 NA19085.hp2 NA19089.hp1 NA19089.hp2 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.83-484dupA c.83-484dupA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640812
chr6:32640812	T T	TAAA TAAA	4	a0003c0004t0004g0018 a0004c0003t0004g0013 a0004c0003t0004g0017 others(1): Show a0003c0004t0004g0018 a0004c0003t0004g0013 a0004c0003t0004g0017 a0005c0005t0004g0012	6	HG01256.hp1 HG01258.hp1 NA18955.hp2 others(3): Show HG01256.hp1 HG01258.hp1 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.83-486_83-484dupAA others(1): Show c.83-486_83-484dupAAA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640812
chr6:32640816	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-494A>T c.83-494A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640816
chr6:32640817	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-493A>T c.83-493A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640817
chr6:32640818	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-492A>T c.83-492A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640818
chr6:32640823	A A	AAAGAAAG AAAGAAAG	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-485_83-484insGA others(5): Show c.83-485_83-484insGAAAGAA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr6	32640823
chr6:32640833	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-477T>C c.83-477T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640833
chr6:32640852	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-458A>G c.83-458A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640852
chr6:32640878	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-432G>A c.83-432G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640878
chr6:32640881	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-429G>A c.83-429G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640881
chr6:32640884	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-426T>C c.83-426T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640884
chr6:32640890	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-420A>G c.83-420A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640890
chr6:32640903	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-407C>T c.83-407C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640903
chr6:32640904	A A	G G	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-406A>G c.83-406A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640904
chr6:32640906	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-404T>G c.83-404T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640906
chr6:32640927	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-383A>G c.83-383A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640927
chr6:32640933	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-377C>T c.83-377C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640933
chr6:32640944	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-366G>A c.83-366G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640944
chr6:32640960	T T	C C	3	a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025 a0002c0002t0002g0005 a0002c0002t0002g0007 a0006c0007t0005g0025	8	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(5): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-350T>C c.83-350T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640960
chr6:32640983	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-327T>C c.83-327T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640983
chr6:32640986	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-324G>A c.83-324G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640986
chr6:32640993	C C	T T	8	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 others(5): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	14	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(11): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.83-317C>T c.83-317C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32640993
chr6:32641013	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-297C>T c.83-297C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641013
chr6:32641039	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-271A>G c.83-271A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641039
chr6:32641040	T T	C C	1	a0005c0005t0004g0012 a0005c0005t0004g0012	2	HG01258.hp1 NA19002.hp1 HG01258.hp1 NA19002.hp1	intron_variant	MODIFIER	c.83-270T>C c.83-270T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641040
chr6:32641043	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-267C>T c.83-267C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641043
chr6:32641044	A A	G G	17	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(14): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0005 a0002c0002t0002g0007 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	38	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(35): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02698.hp1 HG03195.hp1 HG03516.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA18984.hp1 NA18992.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19078.hp2 NA19085.hp1 NA19089.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-266A>G c.83-266A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641044
chr6:32641072	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-238T>C c.83-238T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641072
chr6:32641078	A A	G G	2	a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0005 a0002c0002t0002g0007	7	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(4): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG03516.hp2 NA18906.hp2	intron_variant	MODIFIER	c.83-232A>G c.83-232A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641078
chr6:32641081	C C	T T	5	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 others(2): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0006c0007t0005g0025	8	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(5): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18962.hp1 NA19001.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-229C>T c.83-229C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641081
chr6:32641108	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-202C>T c.83-202C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641108
chr6:32641111	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-199G>T c.83-199G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641111
chr6:32641126	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-184T>C c.83-184T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641126
chr6:32641130	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-180C>A c.83-180C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641130
chr6:32641138	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-172T>C c.83-172T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641138
chr6:32641154	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-156T>A c.83-156T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641154
chr6:32641154	T T	C C	4	a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 others(1): Show a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	7	HG00408.hp1 HG01258.hp1 NA18747.hp2 others(4): Show HG00408.hp1 HG01258.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.83-156T>C c.83-156T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641154
chr6:32641155	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-155G>T c.83-155G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641155
chr6:32641157	A A	T T	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.83-153A>T c.83-153A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641157
chr6:32641161	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-149G>C c.83-149G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641161
chr6:32641169	G G	A A	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.83-141G>A c.83-141G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641169
chr6:32641176	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-134C>T c.83-134C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641176
chr6:32641190	A A	G G	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.83-120A>G c.83-120A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641190
chr6:32641192	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-118A>G c.83-118A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641192
chr6:32641200	A A	G G	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.83-110A>G c.83-110A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641200
chr6:32641204	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-106A>G c.83-106A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641204
chr6:32641214	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-96A>G c.83-96A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641214
chr6:32641232	T T	G G	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.83-78T>G c.83-78T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641232
chr6:32641238	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-72C>T c.83-72C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641238
chr6:32641270	C C	T T	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.83-40C>T c.83-40C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641270
chr6:32641280	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.83-30G>A c.83-30G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641280
chr6:32641284	T T	A A	4	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 others(1): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011	7	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(4): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.83-26T>A c.83-26T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/4		chr6	32641284
chr6:32641564	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	splice_region_variant&intron_variant	LOW	c.331+6C>T c.331+6C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641564
chr6:32641568	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+10C>A c.331+10C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641568
chr6:32641571	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+13C>A c.331+13C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641571
chr6:32641580	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+22T>C c.331+22T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641580
chr6:32641591	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+33A>G c.331+33A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641591
chr6:32641593	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+35G>T c.331+35G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641593
chr6:32641594	T T	C C	19	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(16): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024 a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	55	HG00323.hp2 HG00408.hp1 HG01175.hp1 others(52): Show HG00323.hp2 HG00408.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp1 NA19085.hp2 NA19089.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.331+36T>C c.331+36T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641594
chr6:32641602	C C	T T	6	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(3): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0006c0007t0005g0025	26	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(23): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+44C>T c.331+44C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641602
chr6:32641610	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+52G>A c.331+52G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641610
chr6:32641612	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+54G>T c.331+54G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641612
chr6:32641624	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+66C>A c.331+66C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641624
chr6:32641627	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+69C>T c.331+69C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641627
chr6:32641648	C C	G G	6	a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0006 a0001c0001t0003g0009 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0024	16	HG00323.hp2 HG01243.hp1 HG02129.hp2 others(13): Show HG00323.hp2 HG01243.hp1 HG02129.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp1 NA18612.hp1 NA18984.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19054.hp1 NA19085.hp1 NA19089.hp2 NA21309.hp1	intron_variant	MODIFIER	c.331+90C>G c.331+90C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641648
chr6:32641650	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+92T>C c.331+92T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641650
chr6:32641729	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+171G>C c.331+171G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641729
chr6:32641736	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+178G>T c.331+178G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641736
chr6:32641737	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+179C>T c.331+179C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641737
chr6:32641748	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.331+190A>C c.331+190A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641748
chr6:32641816	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.332-156A>G c.332-156A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641816
chr6:32641830	G G	A A	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.332-142G>A c.332-142G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641830
chr6:32641920	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.332-52C>G c.332-52C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641920
chr6:32641921	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.332-51T>C c.332-51T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641921
chr6:32641925	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.332-47G>T c.332-47G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641925
chr6:32641949	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.332-23C>T c.332-23C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	2/4		chr6	32641949
chr6:32642267	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+14T>C c.613+14T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642267
chr6:32642270	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+17T>C c.613+17T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642270
chr6:32642273	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+20T>C c.613+20T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642273
chr6:32642282	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+29T>G c.613+29T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642282
chr6:32642298	A A	G G	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.613+45A>G c.613+45A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642298
chr6:32642332	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+79A>C c.613+79A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642332
chr6:32642363	T T	TTTCTTTC others(48): Show TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT TCTTTC	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+112_613+113ins others(55): Show c.613+112_613+113insCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTTTCTTTCTT	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4	INFO_REALIGN_3_PRIME	chr6	32642363
chr6:32642369	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+116G>T c.613+116G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642369
chr6:32642373	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+120C>T c.613+120C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642373
chr6:32642374	T T	A A	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.613+121T>A c.613+121T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642374
chr6:32642375	C C	CTT CTT	3	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	intron_variant	MODIFIER	c.613+131_613+132dup others(2): Show c.613+131_613+132dupTT	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4	INFO_REALIGN_3_PRIME	chr6	32642375
chr6:32642379	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+126T>C c.613+126T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642379
chr6:32642401	A A	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+148A>C c.613+148A>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642401
chr6:32642409	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.613+156G>A c.613+156G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642409
chr6:32642436	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-174C>T c.614-174C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642436
chr6:32642437	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-173T>C c.614-173T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642437
chr6:32642441	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-169G>T c.614-169G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642441
chr6:32642443	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-167A>G c.614-167A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642443
chr6:32642450	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-160T>C c.614-160T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642450
chr6:32642456	T T	TGAGCATA others(11): Show TGAGCATAGGGGCTCAAGA	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-153_614-152ins others(18): Show c.614-153_614-152insAGCATAGGGGCTCAAGAG	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4	INFO_REALIGN_3_PRIME	chr6	32642456
chr6:32642469	T T	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-141T>G c.614-141T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642469
chr6:32642493	T T	C C	6	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(3): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0006c0007t0005g0025	26	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(23): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-117T>C c.614-117T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642493
chr6:32642504	C C	T T	14	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(11): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	40	HG00408.hp1 HG01175.hp1 HG01243.hp2 others(37): Show HG00408.hp1 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-106C>T c.614-106C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642504
chr6:32642505	T T	G G	14	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(11): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	40	HG00408.hp1 HG01175.hp1 HG01243.hp2 others(37): Show HG00408.hp1 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp2 NA19089.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-105T>G c.614-105T>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642505
chr6:32642509	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-101G>A c.614-101G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642509
chr6:32642523	C C	T T	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.614-87C>T c.614-87C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642523
chr6:32642536	C C	G G	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.614-74C>G c.614-74C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642536
chr6:32642537	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-73T>C c.614-73T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642537
chr6:32642572	C C	A A	13	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(10): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	39	HG00408.hp1 HG01175.hp1 HG01243.hp2 others(36): Show HG00408.hp1 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01891.hp2 HG02129.hp1 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03195.hp1 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18747.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18962.hp2 NA18969.hp1 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19078.hp2 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.614-38C>A c.614-38C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642572
chr6:32642580	A A	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-30A>T c.614-30A>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642580
chr6:32642594	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-16A>G c.614-16A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642594
chr6:32642601	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.614-9C>T c.614-9C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642601
chr6:32642602	T T	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	splice_region_variant&intron_variant	LOW	c.614-8T>A c.614-8T>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	3/4		chr6	32642602
chr6:32642797	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+13C>T c.20+13C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642797
chr6:32642799	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+15G>T c.20+15G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642799
chr6:32642804	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+20C>G c.20+20C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642804
chr6:32642807	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+23T>C c.20+23T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642807
chr6:32642812	G G	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+28G>T c.20+28G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642812
chr6:32642814	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+30G>C c.20+30G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642814
chr6:32642824	A A	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+40A>G c.20+40A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642824
chr6:32642843	G G	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+59G>A c.20+59G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642843
chr6:32642844	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+60C>G c.20+60C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642844
chr6:32642846	T T	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.20+62T>C c.20+62T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642846
chr6:32642866	G G	T T	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.20+82G>T c.20+82G>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642866
chr6:32642906	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.21-46C>T c.21-46C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642906
chr6:32642911	G G	C C	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.21-41G>C c.21-41G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642911
chr6:32642912	C C	G G	8	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 others(5): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	14	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(11): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.21-40C>G c.21-40C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642912
chr6:32642913	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.21-39C>G c.21-39C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642913
chr6:32642914	C C	G G	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.21-38C>G c.21-38C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642914
chr6:32642915	C C	G G	4	a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 others(1): Show a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012	7	HG00408.hp1 HG01258.hp1 NA18747.hp2 others(4): Show HG00408.hp1 HG01258.hp1 NA18747.hp2 NA18955.hp2 NA18969.hp1 NA19002.hp1 NA19078.hp2	intron_variant	MODIFIER	c.21-37C>G c.21-37C>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642915
chr6:32642918	C C	A A	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.21-34C>A c.21-34C>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642918
chr6:32642919	G G	A A	5	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 others(2): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0019	25	HG01243.hp2 HG01255.hp1 HG01256.hp2 others(22): Show HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG02145.hp1 HG02683.hp2 HG02698.hp2 HG03490.hp1 HG03516.hp2 HG03831.hp1 NA18906.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp2 NA18962.hp2 NA18969.hp2 NA18984.hp2 NA18992.hp2 NA18998.hp2 NA19001.hp1 NA19003.hp1 NA19054.hp2 NA19078.hp1 NA19085.hp2 NA19089.hp1	intron_variant	MODIFIER	c.21-33G>A c.21-33G>A	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642919
chr6:32642927	T T	C C	9	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 others(6): Show a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0004t0004g0021 a0003c0006t0004g0011 a0004c0003t0004g0013 a0004c0003t0004g0014 a0004c0003t0004g0017 a0005c0005t0004g0012 a0006c0007t0005g0025	15	HG00408.hp1 HG01175.hp1 HG01256.hp1 others(12): Show HG00408.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp1 HG01891.hp2 HG02129.hp1 HG03195.hp1 NA18747.hp2 NA18955.hp2 NA18962.hp1 NA18969.hp1 NA19001.hp2 NA19002.hp1 NA19078.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.21-25T>C c.21-25T>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642927
chr6:32642928	G G	C C	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.21-24G>C c.21-24G>C	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642928
chr6:32642941	C C	T T	1	a0006c0007t0005g0025 a0006c0007t0005g0025	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.21-11C>T c.21-11C>T	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	4/4		chr6	32642941

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JoGo Online Haplotype Explorer HLA-DQA1_chr6_32632406_32648684

JoGo Local Haplotype Explorer (on iGV) HLA-DQA1_chr6_32632406_32648684

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 6)

CCoding Level Haplotype Info (Total: 7)

TTranscript Level Haplotype Info (Total: 5)

GGenebody Level Haplotype Info (Total: 25)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 7)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 8)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 25)

Haplotype Details by Sample (Haploid Level) (Total: 86)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 38)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 15)

TTranscript Level Haplotype Variants (Exon) (Total: 78)

GGenebody Level Haplotype Variants (Intron) (Total: 402)

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Annotation (Repeats)

Annotation (SNP Array)