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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

  Error connecting to IGV?   TP53TG3B_chr16_33355841_33368478  TP53TG3B_chr16_33355841_33368478 (clean+top1000)

Multiple Alignments (by translate haplotype frequency)Multiple Alignments (by aa haplotype frequency) Multiple Alignments (by translate haplotype similarity)Multiple Alignments (by aa haplotype similarity)

Item Value
geneid 729355
ensemblid ENSG00000261509.7
hgncid 37202
symbol TP53TG3B
name TP53 target 3B
refseq_nuc NM_001099687.4
refseq_prot NP_001093157.1
ensembl_nuc ENST00000341305.7
ensembl_prot ENSP00000339405.5
mane_status MANE Select
chr chr16
start 33360841
end 33363478
strand +
ver v1.2
region chr16:33360841-33363478
region5000 chr16:33355841-33368478
regionname0 TP53TG3B_chr16_33360841_33363478
regionname5000 TP53TG3B_chr16_33355841_33368478

ahapid grch38/
chm13v2 		alen total AFR AMR EAS EUR SAS JPT regionname genename aa chr start end
a0001 0/0 124 46 10 10 16 4 6 14 TP53TG3B_chr16_33355841_33368478 TP53TG3B copy fasta chr16 33355841 33368478

chapid grch38/
chm13v2 		clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
c0001 0/0 375 46 10 10 16 4 6 TP53TG3B_chr16_33355841_33368478 TP53TG3B copy fasta chr16 33355841 33368478

thapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
t0001 0/0 1093 45 9 10 16 4 6 TP53TG3B_chr16_33355841_33368478 TP53TG3B copy fasta chr16 33355841 33368478
t0002 0/0 1093 1 1 0 0 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B copy fasta chr16 33355841 33368478

ghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
g0001 0/0 41 9 10 12 4 6 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
g0002 0/0 2 0 0 2 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
g0003 0/0 1 0 0 1 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
g0004 0/0 1 1 0 0 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
g0005 0/0 1 0 0 1 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478

achapid grch38/
chm13v2 		clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
a0001c0001 0/0 375 46 10 10 16 4 6 TP53TG3B_chr16_33355841_33368478 TP53TG3B copy fasta chr16 33355841 33368478

acthapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
a0001c0001t0001 0/0 1467 45 9 10 16 4 6 TP53TG3B_chr16_33355841_33368478 TP53TG3B copy fasta chr16 33355841 33368478
a0001c0001t0002 0/0 1467 1 1 0 0 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B copy fasta chr16 33355841 33368478

actghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
a0001c0001t0001g0001 0/0 40 8 10 12 4 6 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
a0001c0001t0001g0002 0/0 2 0 0 2 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
a0001c0001t0001g0003 0/0 1 0 0 1 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
a0001c0001t0001g0004 0/0 1 1 0 0 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
a0001c0001t0001g0005 0/0 1 0 0 1 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
a0001c0001t0002g0001 0/0 1 1 0 0 0 0 TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478

sampleid ID
haplotypeid
 ahapid chapid thapid ghapid gpopname popname regionname genename chr start end
HG00140 hp1 a0001 c0001 t0001 g0001 EUR GBR TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG00140 hp2 a0001 c0001 t0001 g0001 EUR GBR TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG00642 hp1 a0001 c0001 t0001 g0001 AMR PUR TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG00642 hp2 a0001 c0001 t0001 g0001 AMR PUR TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01069 hp1 a0001 c0001 t0001 g0001 AMR PUR TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01069 hp2 a0001 c0001 t0001 g0001 AMR PUR TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01261 hp1 a0001 c0001 t0001 g0001 AMR CLM TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01261 hp2 a0001 c0001 t0001 g0001 AMR CLM TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01515 hp1 a0001 c0001 t0001 g0001 EUR IBS TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01515 hp2 a0001 c0001 t0001 g0001 EUR IBS TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01952 hp1 a0001 c0001 t0001 g0001 AMR PEL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01952 hp2 a0001 c0001 t0001 g0001 AMR PEL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01993 hp1 a0001 c0001 t0001 g0001 AMR PEL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG01993 hp2 a0001 c0001 t0001 g0001 AMR PEL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02135 hp1 a0001 c0001 t0001 g0001 EAS KHV TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02135 hp2 a0001 c0001 t0001 g0001 EAS KHV TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02280 hp1 a0001 c0001 t0001 g0001 AFR ACB TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02280 hp2 a0001 c0001 t0001 g0001 AFR ACB TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02615 hp1 a0001 c0001 t0001 g0001 AFR GWD TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02615 hp2 a0001 c0001 t0001 g0001 AFR GWD TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02698 hp1 a0001 c0001 t0001 g0001 SAS PJL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02698 hp2 a0001 c0001 t0001 g0001 SAS PJL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02895 hp1 a0001 c0001 t0001 g0001 AFR GWD TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02895 hp2 a0001 c0001 t0001 g0001 AFR GWD TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG03669 hp1 a0001 c0001 t0001 g0001 SAS PJL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG03669 hp2 a0001 c0001 t0001 g0001 SAS PJL TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG03834 hp1 a0001 c0001 t0001 g0001 SAS BEB TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG03834 hp2 a0001 c0001 t0001 g0001 SAS BEB TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18943 hp1 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18943 hp2 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18951 hp1 a0001 c0001 t0001 g0003 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18951 hp2 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18967 hp1 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18967 hp2 a0001 c0001 t0001 g0005 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18968 hp1 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18968 hp2 a0001 c0001 t0001 g0002 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18992 hp1 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA18992 hp2 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA19030 hp1 a0001 c0001 t0001 g0001 AFR LWK TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA19030 hp2 a0001 c0001 t0001 g0004 AFR LWK TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA19056 hp1 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA19056 hp2 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA19090 hp1 a0001 c0001 t0001 g0001 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
NA19090 hp2 a0001 c0001 t0001 g0002 EAS JPT TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02109 hp1 a0001 c0001 t0001 g0001 AFR ACB TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478
HG02109 hp2 a0001 c0001 t0002 g0001 AFR ACB TP53TG3B_chr16_33355841_33368478 TP53TG3B chr16 33355841 33368478

chr:pos ref alt #
# of ahapid:amino-acid(protein) level
 ahapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos

chr:pos ref alt #
# of chapid
 chapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos

chr:pos ref alt #
# of thapid:transcript level
 thapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chr16:33363211 T
T
 C
C
 1 a0001c0001t0002
a0001c0001t0002
 1 HG02109.hp2
HG02109.hp2
 3_prime_UTR_variant MODIFIER c.*757T>C
c.*757T>C
TP53TG3B ENSG00000261509.7 transcript ENST00000341305.7 protein_coding 2/2 757 chr16 33363211

chr:pos ref alt #
# of ghapid:genebody level
 ghapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid genebody_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chr16:33361662 G
G
 C
C
 1 a0001c0001t0001g0003
a0001c0001t0001g0003
 1 NA18951.hp1
NA18951.hp1
 intron_variant MODIFIER c.362+392G>C
c.362+392G>C
TP53TG3B ENSG00000261509.7 transcript ENST00000341305.7 protein_coding 1/1 chr16 33361662
chr16:33361771 C
C
 T
T
 1 a0001c0001t0001g0002
a0001c0001t0001g0002
 2 NA18968.hp2
NA19090.hp2
NA18968.hp2
NA19090.hp2
 intron_variant MODIFIER c.362+501C>T
c.362+501C>T
TP53TG3B ENSG00000261509.7 transcript ENST00000341305.7 protein_coding 1/1 chr16 33361771
chr16:33362246 C
C
 T
T
 1 a0001c0001t0001g0005
a0001c0001t0001g0005
 1 NA18967.hp2
NA18967.hp2
 intron_variant MODIFIER c.363-196C>T
c.363-196C>T
TP53TG3B ENSG00000261509.7 transcript ENST00000341305.7 protein_coding 1/1 chr16 33362246
chr16:33362349 A
A
 G
G
 1 a0001c0001t0001g0004
a0001c0001t0001g0004
 1 NA19030.hp2
NA19030.hp2
 intron_variant MODIFIER c.363-93A>G
c.363-93A>G
TP53TG3B ENSG00000261509.7 transcript ENST00000341305.7 protein_coding 1/1 chr16 33362349

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