Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	81620
ensemblid	ENSG00000167513.9
hgncid	24576
symbol	CDT1
name	chromatin licensing and DNA replication factor 1
refseq_nuc	NM_030928.4
refseq_prot	NP_112190.2
ensembl_nuc	ENST00000301019.9
ensembl_prot	ENSP00000301019.4
mane_status	MANE Select
chr	chr16
start	88803789
end	88809258
strand	+
ver	v1.2
region	chr16:88803789-88809258
region5000	chr16:88798789-88814258
regionname0	CDT1_chr16_88803789_88809258
regionname5000	CDT1_chr16_88798789_88814258

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	546	253	55	38	135	7	18	101	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002	0/0	546	162	24	43	61	11	23	45	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0003	0/0	546	7	0	0	7	0	0	7	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0004	0/0	546	4	4	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0005	0/0	546	4	4	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0006	0/0	546	2	2	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0007	0/0	546	1	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0008	0/0	546	1	0	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0009	0/0	546	1	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0010	0/0	546	1	0	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0011	1/0	546	1	0	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0012	0/0	546	1	0	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0013	0/0	546	1	0	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0014	0/0	546	1	0	0	0	0	1	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0015	0/0	546	1	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0016	0/1	546	1	0	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0017	0/0	546	1	0	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0018	0/0	546	1	0	0	1	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1641	138	9	20	93	6	10	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0002	0/0	1641	103	22	26	32	7	16	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0003	0/0	1641	61	16	12	30	0	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0004	0/0	1641	52	1	16	28	4	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0005	0/0	1641	16	14	2	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0006	0/0	1641	10	9	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0007	0/0	1641	7	0	2	0	1	4	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0008	0/0	1641	7	0	0	7	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0009	0/0	1641	5	0	0	5	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0010	0/0	1641	5	5	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0011	0/0	1641	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0012	0/0	1641	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0013	0/0	1641	3	0	0	2	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0014	0/0	1641	3	0	0	0	0	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0015	0/0	1641	2	1	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0016	0/0	1641	2	0	1	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0017	0/0	1641	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0018	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0019	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0020	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0021	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0022	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0023	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0024	0/1	1641	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0025	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0026	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0027	0/0	1641	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0028	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0029	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0030	1/0	1641	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0031	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0032	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0033	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0034	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0035	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0036	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
c0037	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	1024	170	26	44	62	11	25	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0002	0/0	1024	128	4	14	103	1	6	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0003	0/0	1024	55	11	11	30	0	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0004	0/0	1024	17	15	2	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0005	0/0	1024	14	0	7	0	5	2	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0006	0/0	1026	14	13	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0007	0/0	1026	7	0	1	1	1	4	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0008	0/0	1024	5	0	0	5	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0009	0/0	1026	5	5	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0010	0/0	1024	5	5	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0011	0/0	1026	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0012	0/0	1024	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0013	0/0	1024	3	0	2	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0014	0/0	1026	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0015	0/0	1026	2	0	0	2	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0016	0/0	1026	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0017	0/0	1024	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0018	0/0	1024	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0019	0/0	1024	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0020	0/0	1026	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0021	0/0	1024	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0022	0/0	1024	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0023	0/0	1024	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
t0024	0/0	1026	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	349	41	70	185	16	35	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0002	0/0	10	0	0	10	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0003	0/0	9	8	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0004	0/0	8	5	1	0	0	2	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0005	0/0	8	7	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0006	0/0	7	0	2	0	1	4	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0007	0/0	6	6	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0008	0/0	5	5	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0009	0/0	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0010	0/0	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0011	0/0	3	2	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0012	0/0	3	0	2	0	1	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0013	0/0	3	3	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0014	0/0	2	0	0	2	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0015	0/0	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0016	0/0	2	0	0	2	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0017	0/0	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0018	0/0	2	0	2	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0019	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0020	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0021	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0022	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0023	0/0	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0024	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0025	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0026	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0027	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0028	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0029	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0030	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0031	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0032	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
g0033	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1641	138	9	20	93	6	10	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0003	0/0	1641	61	16	12	30	0	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0005	0/0	1641	16	14	2	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0006	0/0	1641	10	9	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0007	0/0	1641	7	0	2	0	1	4	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0009	0/0	1641	5	0	0	5	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0010	0/0	1641	5	5	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0013	0/0	1641	3	0	0	2	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0015	0/0	1641	2	1	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0019	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0020	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0021	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0028	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0029	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0032	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0002	0/0	1641	103	22	26	32	7	16	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0004	0/0	1641	52	1	16	28	4	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0014	0/0	1641	3	0	0	0	0	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0016	0/0	1641	2	0	1	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0025	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0026	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0003c0008	0/0	1641	7	0	0	7	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0004c0012	0/0	1641	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0005c0011	0/0	1641	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0006c0017	0/0	1641	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0007c0037	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0008c0036	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0009c0033	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0010c0031	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0011c0030	1/0	1641	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0012c0018	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0013c0022	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0014c0027	0/0	1641	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0015c0034	0/0	1641	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0016c0024	0/1	1641	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0017c0023	0/0	1641	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0018c0035	0/0	1641	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	2664	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0001t0002	0/0	2664	117	4	13	93	1	6	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0001t0003	0/0	2664	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0001t0005	0/0	2664	14	0	7	0	5	2	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0001t0022	0/0	2664	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0001t0023	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0003t0001	0/0	2664	2	0	2	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0003t0002	0/0	2664	2	0	0	2	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0003t0003	0/0	2664	48	7	10	28	0	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0003t0006	0/0	2666	5	5	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0003t0012	0/0	2664	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0005t0004	0/0	2664	16	14	2	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0006t0006	0/0	2666	9	8	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0006t0020	0/0	2666	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0007t0007	0/0	2666	6	0	1	0	1	4	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0007t0024	0/0	2666	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0009t0001	0/0	2664	5	0	0	5	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0010t0004	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0010t0009	0/0	2666	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0013t0001	0/0	2664	3	0	0	2	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0015t0010	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0015t0015	0/0	2666	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0019t0003	0/0	2664	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0020t0003	0/0	2664	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0021t0003	0/0	2664	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0028t0002	0/0	2664	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0029t0015	0/0	2666	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0001c0032t0009	0/0	2666	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0002t0001	0/0	2664	96	21	26	26	7	16	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0002t0008	0/0	2664	5	0	0	5	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0002t0018	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0002t0019	0/0	2664	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0004t0001	0/0	2664	50	1	14	28	4	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0004t0013	0/0	2664	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0004t0017	0/0	2664	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0014t0001	0/0	2664	3	0	0	0	0	3	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0016t0013	0/0	2664	2	0	1	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0025t0001	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0002c0026t0007	0/0	2666	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0003c0008t0002	0/0	2664	7	0	0	7	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0004c0012t0010	0/0	2664	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0005c0011t0011	0/0	2666	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0006c0017t0014	0/0	2666	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0007c0037t0001	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0008c0036t0001	0/0	2664	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0009c0033t0001	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0010c0031t0001	0/0	2664	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0011c0030t0001	1/0	2664	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0012c0018t0016	0/0	2666	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0013c0022t0021	0/0	2664	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0014c0027t0001	0/0	2664	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0015c0034t0001	0/0	2664	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0016c0024t0001	0/1	2664	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0017c0023t0002	0/0	2664	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258
a0018c0035t0001	0/0	2664	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	copy fasta	chr16	88798789	88814258

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0002g0001	0/0	104	4	11	82	1	6	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0002g0002	0/0	10	0	0	10	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0002g0018	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0002g0021	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0002g0025	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0003g0001	0/0	3	3	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0003g0017	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0005g0001	0/0	12	0	6	0	5	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0005g0004	0/0	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0005g0024	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0022g0001	0/0	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0001t0023g0017	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0003t0001g0001	0/0	2	0	2	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0003t0002g0001	0/0	2	0	0	2	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0003t0003g0001	0/0	46	7	10	26	0	3	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0003t0003g0014	0/0	2	0	0	2	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0003t0006g0004	0/0	5	5	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0003t0012g0001	0/0	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0005t0004g0003	0/0	9	8	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0005t0004g0005	0/0	7	6	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0006t0006g0007	0/0	6	6	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0006t0006g0013	0/0	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0006t0006g0027	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0006t0020g0013	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0007t0007g0006	0/0	6	0	1	0	1	4	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0007t0024g0006	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0009t0001g0001	0/0	5	0	0	5	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0010t0004g0005	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0010t0009g0008	0/0	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0013t0001g0001	0/0	3	0	0	2	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0015t0010g0020	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0015t0015g0016	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0019t0003g0033	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0020t0003g0001	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0021t0003g0001	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0028t0002g0001	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0029t0015g0016	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0001c0032t0009g0008	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0001	0/0	85	17	22	25	6	15	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0011	0/0	3	2	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0012	0/0	3	0	2	0	1	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0019	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0023	0/0	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0026	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0030	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0001g0032	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0008g0001	0/0	5	0	0	5	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0018g0001	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0002t0019g0001	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0004t0001g0001	0/0	49	1	14	27	4	3	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0004t0001g0031	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0004t0013g0001	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0004t0017g0001	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0014t0001g0001	0/0	3	0	0	0	0	3	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0016t0013g0004	0/0	2	0	1	0	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0025t0001g0001	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0002c0026t0007g0001	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0003c0008t0002g0001	0/0	6	0	0	6	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0003c0008t0002g0022	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0004c0012t0010g0009	0/0	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0005c0011t0011g0010	0/0	4	4	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0006c0017t0014g0015	0/0	2	2	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0007c0037t0001g0001	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0008c0036t0001g0001	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0009c0033t0001g0001	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0010c0031t0001g0001	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0011c0030t0001g0001	1/0	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0012c0018t0016g0028	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0013c0022t0021g0029	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0014c0027t0001g0001	0/0	1	0	0	0	0	1	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0015c0034t0001g0001	0/0	1	1	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0016c0024t0001g0001	0/1	1	0	0	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0017c0023t0002g0018	0/0	1	0	1	0	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
a0018c0035t0001g0001	0/0	1	0	0	1	0	0	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0002	c0004	t0001	g0001	EUR	GBR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00099	hp2	a0002	c0002	t0001	g0012	EUR	GBR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00140	hp1	a0002	c0002	t0001	g0001	EUR	GBR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00140	hp2	a0002	c0002	t0001	g0001	EUR	GBR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00280	hp1	a0001	c0001	t0005	g0001	EUR	FIN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00280	hp2	a0001	c0001	t0005	g0001	EUR	FIN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00323	hp1	a0002	c0002	t0001	g0001	EUR	FIN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00323	hp2	a0002	c0002	t0001	g0001	EUR	FIN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00408	hp1	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00408	hp2	a0002	c0002	t0001	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00423	hp1	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00423	hp2	a0001	c0003	t0003	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00438	hp1	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00438	hp2	a0002	c0004	t0001	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00544	hp1	a0002	c0002	t0001	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00544	hp2	a0002	c0004	t0001	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00558	hp1	a0002	c0002	t0001	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00558	hp2	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00597	hp1	a0001	c0003	t0003	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00597	hp2	a0001	c0001	t0002	g0002	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00609	hp1	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00609	hp2	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00621	hp1	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00621	hp2	a0001	c0001	t0002	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00639	hp1	a0012	c0018	t0016	g0028	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00639	hp2	a0001	c0020	t0003	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00642	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00642	hp2	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00673	hp1	a0002	c0002	t0001	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00673	hp2	a0002	c0002	t0001	g0001	EAS	CHS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00733	hp1	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00733	hp2	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00735	hp1	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00735	hp2	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00738	hp1	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00738	hp2	a0001	c0001	t0005	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00741	hp1	a0001	c0003	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG00741	hp2	a0002	c0004	t0017	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01069	hp1	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01069	hp2	a0001	c0001	t0005	g0024	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01070	hp1	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01070	hp2	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01071	hp1	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01071	hp2	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01074	hp1	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01074	hp2	a0001	c0001	t0005	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01081	hp1	a0001	c0003	t0003	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01081	hp2	a0001	c0006	t0006	g0027	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01099	hp1	a0001	c0001	t0002	g0018	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01099	hp2	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01106	hp1	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01106	hp2	a0001	c0001	t0002	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01109	hp1	a0001	c0005	t0004	g0003	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01109	hp2	a0017	c0023	t0002	g0018	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01167	hp1	a0002	c0002	t0001	g0011	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01167	hp2	a0002	c0002	t0001	g0012	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01168	hp1	a0002	c0002	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01168	hp2	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01169	hp1	a0002	c0002	t0001	g0012	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01169	hp2	a0002	c0004	t0001	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01175	hp1	a0001	c0003	t0003	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01175	hp2	a0001	c0007	t0007	g0006	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01192	hp1	a0001	c0005	t0004	g0005	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01192	hp2	a0001	c0001	t0005	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01243	hp1	a0013	c0022	t0021	g0029	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01243	hp2	a0001	c0001	t0002	g0001	AMR	PUR	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01255	hp1	a0001	c0003	t0003	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01255	hp2	a0002	c0002	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01256	hp1	a0002	c0004	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01256	hp2	a0010	c0031	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01257	hp1	a0002	c0002	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01257	hp2	a0002	c0002	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01258	hp1	a0002	c0004	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01258	hp2	a0002	c0002	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01261	hp1	a0001	c0003	t0003	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01261	hp2	a0002	c0002	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01346	hp1	a0001	c0001	t0005	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01346	hp2	a0001	c0003	t0003	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01358	hp1	a0001	c0003	t0003	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01358	hp2	a0001	c0001	t0002	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01361	hp1	a0002	c0004	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01361	hp2	a0002	c0002	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01433	hp1	a0001	c0001	t0005	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01433	hp2	a0002	c0004	t0013	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01496	hp1	a0002	c0002	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01496	hp2	a0001	c0003	t0003	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01515	hp1	a0001	c0001	t0002	g0001	EUR	IBS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01515	hp2	a0001	c0001	t0005	g0001	EUR	IBS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01516	hp1	a0002	c0002	t0001	g0001	EUR	IBS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01516	hp2	a0002	c0004	t0001	g0001	EUR	IBS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01517	hp1	a0001	c0001	t0005	g0001	EUR	IBS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01517	hp2	a0002	c0004	t0001	g0001	EUR	IBS	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01884	hp1	a0002	c0004	t0001	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01884	hp2	a0001	c0010	t0009	g0008	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01891	hp1	a0001	c0001	t0002	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01891	hp2	a0001	c0006	t0006	g0007	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01928	hp1	a0002	c0002	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01928	hp2	a0001	c0001	t0005	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01934	hp1	a0002	c0002	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01934	hp2	a0001	c0001	t0002	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01943	hp1	a0002	c0002	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01943	hp2	a0002	c0002	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01952	hp1	a0001	c0001	t0002	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01952	hp2	a0001	c0003	t0003	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01978	hp1	a0008	c0036	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01978	hp2	a0002	c0004	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01981	hp1	a0002	c0004	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01981	hp2	a0001	c0001	t0002	g0025	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01993	hp1	a0001	c0001	t0002	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01993	hp2	a0001	c0001	t0002	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02004	hp1	a0002	c0002	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02004	hp2	a0002	c0002	t0001	g0030	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02015	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02015	hp2	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02027	hp1	a0002	c0002	t0008	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02027	hp2	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02040	hp1	a0002	c0002	t0008	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02040	hp2	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02055	hp1	a0001	c0003	t0006	g0004	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02055	hp2	a0006	c0017	t0014	g0015	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02056	hp1	a0001	c0001	t0002	g0002	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02056	hp2	a0001	c0009	t0001	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02071	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02071	hp2	a0002	c0002	t0001	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02074	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02074	hp2	a0001	c0001	t0002	g0002	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02080	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02080	hp2	a0002	c0004	t0001	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02083	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02083	hp2	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02129	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02129	hp2	a0002	c0004	t0001	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02132	hp1	a0001	c0021	t0003	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02132	hp2	a0001	c0003	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02135	hp1	a0002	c0004	t0001	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02135	hp2	a0002	c0002	t0008	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02145	hp1	a0015	c0034	t0001	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02145	hp2	a0001	c0003	t0012	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02148	hp1	a0001	c0001	t0002	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02148	hp2	a0001	c0003	t0003	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02155	hp1	a0001	c0019	t0003	g0033	EAS	CDX	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02155	hp2	a0001	c0001	t0002	g0001	EAS	CDX	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02165	hp1	a0001	c0009	t0001	g0001	EAS	CDX	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02165	hp2	a0002	c0002	t0001	g0001	EAS	CDX	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02257	hp1	a0001	c0001	t0002	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02257	hp2	a0007	c0037	t0001	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02258	hp1	a0004	c0012	t0010	g0009	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02258	hp2	a0001	c0010	t0009	g0008	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02273	hp1	a0001	c0007	t0024	g0006	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02273	hp2	a0002	c0002	t0001	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02280	hp1	a0001	c0005	t0004	g0003	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02280	hp2	a0001	c0006	t0006	g0007	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02293	hp1	a0001	c0003	t0003	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02293	hp2	a0001	c0001	t0002	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02300	hp1	a0001	c0001	t0002	g0001	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02300	hp2	a0002	c0016	t0013	g0004	AMR	PEL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02451	hp1	a0001	c0010	t0009	g0008	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02451	hp2	a0001	c0005	t0004	g0003	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02523	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02523	hp2	a0002	c0004	t0001	g0001	EAS	KHV	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02572	hp1	a0002	c0002	t0001	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02572	hp2	a0001	c0001	t0003	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02602	hp1	a0001	c0007	t0007	g0006	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02602	hp2	a0001	c0003	t0003	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02615	hp1	a0002	c0002	t0001	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02615	hp2	a0002	c0002	t0001	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02622	hp1	a0001	c0003	t0012	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02622	hp2	a0001	c0005	t0004	g0003	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02630	hp1	a0001	c0006	t0006	g0013	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02630	hp2	a0002	c0002	t0001	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02647	hp1	a0002	c0002	t0001	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02647	hp2	a0001	c0005	t0004	g0005	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02683	hp1	a0002	c0004	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02683	hp2	a0002	c0002	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02698	hp1	a0001	c0003	t0003	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02698	hp2	a0002	c0002	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02717	hp1	a0002	c0002	t0001	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02717	hp2	a0001	c0003	t0003	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02723	hp1	a0001	c0006	t0006	g0013	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02723	hp2	a0002	c0002	t0001	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02735	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02735	hp2	a0014	c0027	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02738	hp1	a0001	c0001	t0005	g0004	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02738	hp2	a0001	c0001	t0002	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02809	hp1	a0001	c0003	t0003	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02809	hp2	a0001	c0005	t0004	g0005	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02886	hp1	a0001	c0003	t0003	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02886	hp2	a0004	c0012	t0010	g0009	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02895	hp1	a0005	c0011	t0011	g0010	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02895	hp2	a0001	c0005	t0004	g0005	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02896	hp1	a0005	c0011	t0011	g0010	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02896	hp2	a0001	c0001	t0003	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02897	hp1	a0001	c0001	t0003	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02897	hp2	a0001	c0005	t0004	g0005	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02922	hp1	a0002	c0002	t0001	g0019	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02922	hp2	a0002	c0002	t0001	g0001	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02965	hp1	a0001	c0005	t0004	g0005	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02965	hp2	a0002	c0002	t0001	g0011	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02970	hp1	a0001	c0006	t0006	g0007	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02970	hp2	a0001	c0015	t0010	g0020	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02976	hp1	a0002	c0025	t0001	g0001	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02976	hp2	a0001	c0003	t0006	g0004	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03041	hp1	a0001	c0006	t0006	g0007	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03041	hp2	a0001	c0001	t0003	g0017	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03098	hp1	a0001	c0010	t0004	g0005	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03098	hp2	a0001	c0003	t0012	g0001	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03139	hp1	a0001	c0005	t0004	g0003	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03139	hp2	a0001	c0003	t0003	g0001	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03195	hp1	a0005	c0011	t0011	g0010	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03195	hp2	a0001	c0005	t0004	g0003	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03209	hp1	a0001	c0005	t0004	g0003	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03209	hp2	a0002	c0002	t0001	g0001	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03225	hp1	a0005	c0011	t0011	g0010	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03225	hp2	a0001	c0032	t0009	g0008	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03239	hp1	a0002	c0002	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03239	hp2	a0001	c0001	t0005	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03453	hp1	a0004	c0012	t0010	g0009	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03453	hp2	a0001	c0006	t0006	g0007	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03486	hp1	a0002	c0002	t0001	g0001	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03486	hp2	a0001	c0003	t0006	g0004	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03492	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03492	hp2	a0002	c0002	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03516	hp1	a0004	c0012	t0010	g0009	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03516	hp2	a0001	c0003	t0003	g0001	AFR	ESN	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03540	hp1	a0001	c0005	t0004	g0005	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03540	hp2	a0001	c0003	t0003	g0001	AFR	GWD	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03579	hp1	a0002	c0002	t0018	g0001	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03579	hp2	a0001	c0005	t0004	g0003	AFR	MSL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03654	hp1	a0002	c0002	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03654	hp2	a0002	c0004	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03669	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03669	hp2	a0002	c0002	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03688	hp1	a0002	c0014	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03688	hp2	a0002	c0002	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03704	hp1	a0001	c0003	t0003	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03704	hp2	a0002	c0002	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03710	hp1	a0001	c0007	t0007	g0006	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03710	hp2	a0002	c0014	t0001	g0001	SAS	PJL	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03831	hp1	a0001	c0007	t0007	g0006	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03831	hp2	a0001	c0001	t0002	g0001	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03834	hp1	a0002	c0016	t0013	g0004	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03834	hp2	a0002	c0002	t0001	g0001	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03942	hp1	a0002	c0002	t0001	g0001	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG03942	hp2	a0001	c0001	t0002	g0001	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04115	hp1	a0002	c0002	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04115	hp2	a0002	c0002	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04184	hp1	a0002	c0014	t0001	g0001	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04184	hp2	a0002	c0004	t0001	g0001	SAS	BEB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04199	hp2	a0002	c0002	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04204	hp1	a0002	c0002	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04204	hp2	a0002	c0002	t0001	g0023	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04228	hp1	a0001	c0013	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG04228	hp2	a0002	c0002	t0001	g0001	SAS	STU	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18522	hp1	a0001	c0003	t0003	g0001	AFR	YRI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18522	hp2	a0002	c0002	t0001	g0011	AFR	YRI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18612	hp1	a0001	c0001	t0002	g0001	EAS	CHB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18612	hp2	a0001	c0003	t0003	g0001	EAS	CHB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18747	hp1	a0001	c0001	t0002	g0001	EAS	CHB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18747	hp2	a0001	c0003	t0003	g0001	EAS	CHB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18939	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18939	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18941	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18941	hp2	a0003	c0008	t0002	g0022	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18942	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18942	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18943	hp1	a0001	c0013	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18943	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18945	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18945	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18946	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18946	hp2	a0003	c0008	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18947	hp1	a0003	c0008	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18947	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18948	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18948	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18949	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18949	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18950	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18950	hp2	a0001	c0029	t0015	g0016	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18951	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18951	hp2	a0001	c0001	t0002	g0002	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18952	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18952	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18953	hp1	a0001	c0009	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18953	hp2	a0001	c0001	t0002	g0002	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18954	hp1	a0002	c0002	t0008	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18954	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18956	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18956	hp2	a0001	c0009	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18957	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18957	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18960	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18960	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18961	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18961	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18962	hp1	a0002	c0004	t0001	g0031	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18962	hp2	a0002	c0026	t0007	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18963	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18963	hp2	a0002	c0002	t0001	g0032	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18964	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18964	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18966	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18966	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18967	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18967	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18968	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18968	hp2	a0001	c0003	t0003	g0014	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18969	hp1	a0001	c0009	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18969	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18970	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18970	hp2	a0002	c0002	t0019	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18973	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18973	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18974	hp1	a0003	c0008	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18974	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18975	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18975	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18977	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18977	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18978	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18978	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18980	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18980	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18982	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18982	hp2	a0002	c0002	t0008	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18983	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18983	hp2	a0003	c0008	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18984	hp1	a0018	c0035	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18984	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18985	hp1	a0001	c0003	t0003	g0014	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18985	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18987	hp1	a0001	c0001	t0002	g0002	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18987	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18990	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18990	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18991	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18991	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18993	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18993	hp2	a0001	c0013	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18994	hp1	a0001	c0001	t0002	g0002	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18994	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18995	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18995	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18999	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA18999	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19000	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19000	hp2	a0001	c0001	t0002	g0021	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19002	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19002	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19005	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19005	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19009	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19009	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19010	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19010	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19012	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19012	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19030	hp1	a0006	c0017	t0014	g0015	AFR	LWK	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19030	hp2	a0002	c0002	t0001	g0001	AFR	LWK	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19043	hp1	a0001	c0001	t0002	g0001	AFR	LWK	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19043	hp2	a0001	c0001	t0023	g0017	AFR	LWK	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19056	hp1	a0001	c0003	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19056	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19057	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19057	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19060	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19060	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19062	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19062	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19063	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19063	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19064	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19064	hp2	a0003	c0008	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19065	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19065	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19067	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19067	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19068	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19068	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19070	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19070	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19072	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19072	hp2	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19074	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19074	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19076	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19076	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19077	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19077	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19078	hp1	a0002	c0004	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19078	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19079	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19079	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19080	hp1	a0001	c0001	t0002	g0002	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19080	hp2	a0001	c0028	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19081	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19081	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19082	hp1	a0001	c0001	t0002	g0002	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19082	hp2	a0003	c0008	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19083	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19083	hp2	a0001	c0015	t0015	g0016	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19084	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19084	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19085	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19085	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19086	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19086	hp2	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19087	hp1	a0001	c0003	t0003	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19087	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19088	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19088	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19089	hp1	a0001	c0001	t0002	g0002	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19089	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19090	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19090	hp2	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19091	hp1	a0002	c0002	t0001	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19091	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19240	hp1	a0001	c0003	t0006	g0004	AFR	YRI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA19240	hp2	a0002	c0002	t0001	g0001	AFR	YRI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20129	hp1	a0001	c0003	t0006	g0004	AFR	ASW	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20129	hp2	a0002	c0002	t0001	g0001	AFR	ASW	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20752	hp1	a0001	c0007	t0007	g0006	EUR	TSI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20752	hp2	a0001	c0001	t0005	g0001	EUR	TSI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20805	hp1	a0002	c0002	t0001	g0001	EUR	TSI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20805	hp2	a0002	c0004	t0001	g0001	EUR	TSI	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20905	hp1	a0001	c0001	t0022	g0001	SAS	GIH	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20905	hp2	a0001	c0007	t0007	g0006	SAS	GIH	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01123	hp1	a0001	c0003	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG01123	hp2	a0002	c0004	t0001	g0001	AMR	CLM	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02109	hp1	a0001	c0005	t0004	g0003	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02109	hp2	a0009	c0033	t0001	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02486	hp1	a0002	c0002	t0001	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02486	hp2	a0002	c0002	t0001	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02559	hp1	a0001	c0006	t0006	g0007	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG02559	hp2	a0001	c0003	t0012	g0001	AFR	ACB	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG06807	hp1	a0002	c0002	t0001	g0026	AFR	USA	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
HG06807	hp2	a0002	c0002	t0001	g0001	AFR	USA	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20300	hp1	a0002	c0002	t0001	g0001	AFR	USA	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA20300	hp2	a0001	c0001	t0002	g0001	AFR	USA	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA21309	hp1	a0001	c0006	t0020	g0013	AFR	LWK	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
NA21309	hp2	a0001	c0010	t0009	g0008	AFR	LWK	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
homoSapiens_chm13v2	hp1	a0016	c0024	t0001	g0001	REF	REF	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258
homoSapiens_grch38	hp1	a0011	c0030	t0001	g0001	REF	REF	CDT1_chr16_88798789_88814258	CDT1	chr16	88798789	88814258

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr16:88803961	A A	C C	2	a0004 a0007 a0004 a0007	5	HG02257.hp2 HG02258.hp1 HG02886.hp2 others(2): Show HG02257.hp2 HG02258.hp1 HG02886.hp2 HG03453.hp1 HG03516.hp1	missense_variant	MODERATE	c.130A>C c.130A>C	p.Thr44Pro p.Thr44Pro	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/10	173/2664	130/1641	44/546	chr16	88803961
chr16:88804016	C C	T T	1	a0003 a0003	7	NA18941.hp2 NA18946.hp2 NA18947.hp1 others(4): Show NA18941.hp2 NA18946.hp2 NA18947.hp1 NA18974.hp1 NA18983.hp2 NA19064.hp2 NA19082.hp2	missense_variant	MODERATE	c.185C>T c.185C>T	p.Ala62Val p.Ala62Val	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/10	228/2664	185/1641	62/546	chr16	88804016
chr16:88804564	C C	T T	1	a0008 a0008	1	HG01978.hp1 HG01978.hp1	missense_variant	MODERATE	c.248C>T c.248C>T	p.Pro83Leu p.Pro83Leu	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	2/10	291/2664	248/1641	83/546	chr16	88804564
chr16:88804608	A A	G G	1	a0006 a0006	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	missense_variant	MODERATE	c.292A>G c.292A>G	p.Ile98Val p.Ile98Val	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	2/10	335/2664	292/1641	98/546	chr16	88804608
chr16:88804798	G G	T T	1	a0018 a0018	1	NA18984.hp1 NA18984.hp1	missense_variant	MODERATE	c.388G>T c.388G>T	p.Ala130Ser p.Ala130Ser	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/10	431/2664	388/1641	130/546	chr16	88804798
chr16:88804814	C C	T T	1	a0004 a0004	4	HG02258.hp1 HG02886.hp2 HG03453.hp1 others(1): Show HG02258.hp1 HG02886.hp2 HG03453.hp1 HG03516.hp1	missense_variant	MODERATE	c.404C>T c.404C>T	p.Ala135Val p.Ala135Val	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/10	447/2664	404/1641	135/546	chr16	88804814
chr16:88805465	C C	T T	1	a0009 a0009	1	HG02109.hp2 HG02109.hp2	missense_variant	MODERATE	c.514C>T c.514C>T	p.Arg172Cys p.Arg172Cys	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	4/10	557/2664	514/1641	172/546	chr16	88805465
chr16:88805543	C C	T T	1	a0010 a0010	1	HG01256.hp2 HG01256.hp2	missense_variant	MODERATE	c.592C>T c.592C>T	p.Arg198Cys p.Arg198Cys	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	4/10	635/2664	592/1641	198/546	chr16	88805543
chr16:88805564	G G	A A	1	a0017 a0017	1	HG01109.hp2 HG01109.hp2	missense_variant	MODERATE	c.613G>A c.613G>A	p.Gly205Ser p.Gly205Ser	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	4/10	656/2664	613/1641	205/546	chr16	88805564
chr16:88805737	T T	C C	17	a0001 a0002 a0003 others(14): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0012 a0013 a0014 a0015 a0016 a0017 a0018	443	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(440): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18985.hp2 NA18987.hp1 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19005.hp2 NA19009.hp1 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19067.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp1 NA19074.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19088.hp2 NA19089.hp1 NA19089.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.700T>C c.700T>C	p.Cys234Arg p.Cys234Arg	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	5/10	743/2664	700/1641	234/546	chr16	88805737
chr16:88805821	A A	G G	8	a0001 a0003 a0004 others(5): Show a0001 a0003 a0004 a0005 a0006 a0012 a0013 a0017	273	HG00280.hp1 HG00280.hp2 HG00408.hp1 others(270): Show HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00738.hp2 HG00741.hp1 HG01069.hp2 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp2 HG01934.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp1 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03669.hp1 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp2 HG04199.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp2 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18985.hp1 NA18987.hp1 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19005.hp2 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19067.hp2 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19091.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	missense_variant	MODERATE	c.784A>G c.784A>G	p.Thr262Ala p.Thr262Ala	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	5/10	827/2664	784/1641	262/546	chr16	88805821
chr16:88807064	T T	C C	1	a0016 a0016	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.1136T>C c.1136T>C	p.Leu379Ser p.Leu379Ser	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	8/10	1179/2664	1136/1641	379/546	chr16	88807064
chr16:88807327	G G	T T	1	a0015 a0015	1	HG02145.hp1 HG02145.hp1	missense_variant	MODERATE	c.1322G>T c.1322G>T	p.Cys441Phe p.Cys441Phe	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/10	1365/2664	1322/1641	441/546	chr16	88807327
chr16:88807330	C C	T T	1	a0012 a0012	1	HG00639.hp1 HG00639.hp1	missense_variant	MODERATE	c.1325C>T c.1325C>T	p.Pro442Leu p.Pro442Leu	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/10	1368/2664	1325/1641	442/546	chr16	88807330
chr16:88807362	C C	T T	1	a0014 a0014	1	HG02735.hp2 HG02735.hp2	missense_variant	MODERATE	c.1357C>T c.1357C>T	p.Arg453Trp p.Arg453Trp	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/10	1400/2664	1357/1641	453/546	chr16	88807362
chr16:88807372	A A	C C	2	a0012 a0013 a0012 a0013	2	HG00639.hp1 HG01243.hp1 HG00639.hp1 HG01243.hp1	missense_variant	MODERATE	c.1367A>C c.1367A>C	p.Glu456Ala p.Glu456Ala	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/10	1410/2664	1367/1641	456/546	chr16	88807372
chr16:88807477	G G	A A	1	a0006 a0006	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	missense_variant	MODERATE	c.1472G>A c.1472G>A	p.Ser491Asn p.Ser491Asn	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/10	1515/2664	1472/1641	491/546	chr16	88807477
chr16:88808247	C C	T T	3	a0005 a0012 a0013 a0005 a0012 a0013	6	HG00639.hp1 HG01243.hp1 HG02895.hp1 others(3): Show HG00639.hp1 HG01243.hp1 HG02895.hp1 HG02896.hp1 HG03195.hp1 HG03225.hp1	missense_variant	MODERATE	c.1610C>T c.1610C>T	p.Ala537Val p.Ala537Val	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	1653/2664	1610/1641	537/546	chr16	88808247

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr16:88803846	C C	A A	1	a0012c0018 a0012c0018	1	HG00639.hp1 HG00639.hp1	synonymous_variant	LOW	c.15C>A c.15C>A	p.Arg5Arg p.Arg5Arg	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/10	58/2664	15/1641	5/546	chr16	88803846
chr16:88804559	T T	C C	5	a0001c0003 a0001c0009 a0001c0019 others(2): Show a0001c0003 a0001c0009 a0001c0019 a0001c0020 a0001c0021	69	HG00423.hp2 HG00597.hp1 HG00639.hp2 others(66): Show HG00423.hp2 HG00597.hp1 HG00639.hp2 HG00741.hp1 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01952.hp2 HG02055.hp1 HG02056.hp2 HG02132.hp1 HG02132.hp2 HG02145.hp2 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02293.hp1 HG02559.hp2 HG02602.hp2 HG02622.hp1 HG02698.hp1 HG02717.hp2 HG02809.hp1 HG02886.hp1 HG02976.hp2 HG03098.hp2 HG03139.hp2 HG03486.hp2 HG03516.hp2 HG03540.hp2 HG03704.hp1 NA18522.hp1 NA18612.hp2 NA18747.hp2 NA18939.hp2 NA18947.hp2 NA18948.hp2 NA18953.hp1 NA18956.hp2 NA18960.hp1 NA18963.hp1 NA18964.hp2 NA18966.hp1 NA18968.hp2 NA18969.hp1 NA18974.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18987.hp2 NA18991.hp1 NA18993.hp1 NA19009.hp2 NA19010.hp1 NA19056.hp1 NA19057.hp2 NA19062.hp1 NA19063.hp1 NA19079.hp2 NA19081.hp2 NA19086.hp2 NA19087.hp1 NA19240.hp1 NA20129.hp1	synonymous_variant	LOW	c.243T>C c.243T>C	p.Ser81Ser p.Ser81Ser	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	2/10	286/2664	243/1641	81/546	chr16	88804559
chr16:88804845	G G	A A	2	a0012c0018 a0013c0022 a0012c0018 a0013c0022	2	HG00639.hp1 HG01243.hp1 HG00639.hp1 HG01243.hp1	synonymous_variant	LOW	c.435G>A c.435G>A	p.Gln145Gln p.Gln145Gln	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/10	478/2664	435/1641	145/546	chr16	88804845
chr16:88804875	C C	T T	1	a0015c0034 a0015c0034	1	HG02145.hp1 HG02145.hp1	synonymous_variant	LOW	c.465C>T c.465C>T	p.Ala155Ala p.Ala155Ala	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/10	508/2664	465/1641	155/546	chr16	88804875
chr16:88805500	A A	G G	9	a0001c0005 a0001c0007 a0001c0010 others(6): Show a0001c0005 a0001c0007 a0001c0010 a0001c0032 a0002c0016 a0005c0011 a0006c0017 a0012c0018 a0013c0022	39	HG00639.hp1 HG01109.hp1 HG01175.hp2 others(36): Show HG00639.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01884.hp2 HG02055.hp2 HG02109.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02602.hp1 HG02622.hp2 HG02647.hp2 HG02809.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG02965.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03540.hp1 HG03579.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp1 NA19030.hp1 NA20752.hp1 NA20905.hp2 NA21309.hp2	synonymous_variant	LOW	c.549A>G c.549A>G	p.Gly183Gly p.Gly183Gly	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	4/10	592/2664	549/1641	183/546	chr16	88805500
chr16:88805775	C C	T T	1	a0002c0014 a0002c0014	3	HG03688.hp1 HG03710.hp2 HG04184.hp1 HG03688.hp1 HG03710.hp2 HG04184.hp1	synonymous_variant	LOW	c.738C>T c.738C>T	p.Ser246Ser p.Ser246Ser	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	5/10	781/2664	738/1641	246/546	chr16	88805775
chr16:88806043	G G	A A	1	a0001c0019 a0001c0019	1	HG02155.hp1 HG02155.hp1	synonymous_variant	LOW	c.855G>A c.855G>A	p.Gln285Gln p.Gln285Gln	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/10	898/2664	855/1641	285/546	chr16	88806043
chr16:88806103	T T	C C	33	a0001c0001 a0001c0003 a0001c0005 others(30): Show a0001c0001 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0013 a0001c0015 a0001c0019 a0001c0020 a0001c0028 a0001c0029 a0001c0032 a0002c0002 a0002c0014 a0002c0016 a0002c0025 a0002c0026 a0003c0008 a0004c0012 a0005c0011 a0006c0017 a0007c0037 a0008c0036 a0009c0033 a0010c0031 a0012c0018 a0013c0022 a0014c0027 a0015c0034 a0016c0024 a0017c0023	389	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(386): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00738.hp2 HG00741.hp1 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp2 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18985.hp1 NA18987.hp1 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp2 NA19005.hp1 NA19005.hp2 NA19009.hp1 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19067.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19088.hp2 NA19089.hp1 NA19089.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.915T>C c.915T>C	p.His305His p.His305His	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/10	958/2664	915/1641	305/546	chr16	88806103
chr16:88806551	G G	A A	1	a0001c0028 a0001c0028	1	NA19080.hp2 NA19080.hp2	synonymous_variant	LOW	c.999G>A c.999G>A	p.Pro333Pro p.Pro333Pro	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/10	1042/2664	999/1641	333/546	chr16	88806551
chr16:88806575	C C	T T	1	a0001c0020 a0001c0020	1	HG00639.hp2 HG00639.hp2	synonymous_variant	LOW	c.1023C>T c.1023C>T	p.Pro341Pro p.Pro341Pro	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/10	1066/2664	1023/1641	341/546	chr16	88806575
chr16:88807107	G G	C C	1	a0001c0006 a0001c0006	10	HG01081.hp2 HG01891.hp2 HG02280.hp2 others(7): Show HG01081.hp2 HG01891.hp2 HG02280.hp2 HG02559.hp1 HG02630.hp1 HG02723.hp1 HG02970.hp1 HG03041.hp1 HG03453.hp2 NA21309.hp1	synonymous_variant	LOW	c.1179G>C c.1179G>C	p.Gly393Gly p.Gly393Gly	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	8/10	1222/2664	1179/1641	393/546	chr16	88807107
chr16:88807382	C C	T T	5	a0001c0007 a0001c0015 a0001c0029 others(2): Show a0001c0007 a0001c0015 a0001c0029 a0002c0026 a0004c0012	15	HG01175.hp2 HG02258.hp1 HG02273.hp1 others(12): Show HG01175.hp2 HG02258.hp1 HG02273.hp1 HG02602.hp1 HG02886.hp2 HG02970.hp2 HG03453.hp1 HG03516.hp1 HG03710.hp1 HG03831.hp1 NA18950.hp2 NA18962.hp2 NA19083.hp2 NA20752.hp1 NA20905.hp2	synonymous_variant	LOW	c.1377C>T c.1377C>T	p.Arg459Arg p.Arg459Arg	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/10	1420/2664	1377/1641	459/546	chr16	88807382
chr16:88808137	G G	T T	1	a0001c0005 a0001c0005	16	HG01109.hp1 HG01192.hp1 HG02109.hp1 others(13): Show HG01109.hp1 HG01192.hp1 HG02109.hp1 HG02280.hp1 HG02451.hp2 HG02622.hp2 HG02647.hp2 HG02809.hp2 HG02895.hp2 HG02897.hp2 HG02965.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03540.hp1 HG03579.hp2	synonymous_variant	LOW	c.1500G>T c.1500G>T	p.Leu500Leu p.Leu500Leu	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	1543/2664	1500/1641	500/546	chr16	88808137
chr16:88808158	G G	A A	1	a0002c0025 a0002c0025	1	HG02976.hp1 HG02976.hp1	synonymous_variant	LOW	c.1521G>A c.1521G>A	p.Pro507Pro p.Pro507Pro	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	1564/2664	1521/1641	507/546	chr16	88808158
chr16:88808197	C C	T T	1	a0001c0029 a0001c0029	1	NA18950.hp2 NA18950.hp2	synonymous_variant	LOW	c.1560C>T c.1560C>T	p.Tyr520Tyr p.Tyr520Tyr	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	1603/2664	1560/1641	520/546	chr16	88808197
chr16:88808218	G G	A A	1	a0001c0032 a0001c0032	1	HG03225.hp2 HG03225.hp2	synonymous_variant	LOW	c.1581G>A c.1581G>A	p.Ala527Ala p.Ala527Ala	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	1624/2664	1581/1641	527/546	chr16	88808218
chr16:88808224	C C	G G	21	a0001c0001 a0001c0003 a0001c0005 others(18): Show a0001c0001 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0010 a0001c0015 a0001c0019 a0001c0020 a0001c0021 a0001c0028 a0001c0029 a0001c0032 a0002c0026 a0003c0008 a0004c0012 a0005c0011 a0006c0017 a0012c0018 a0013c0022 a0017c0023	266	HG00280.hp1 HG00280.hp2 HG00408.hp1 others(263): Show HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00738.hp2 HG00741.hp1 HG01069.hp2 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp2 HG01934.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp1 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03669.hp1 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp2 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp2 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18953.hp2 NA18954.hp2 NA18956.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18968.hp2 NA18969.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18985.hp1 NA18987.hp1 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19005.hp2 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19067.hp2 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19091.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	synonymous_variant	LOW	c.1587C>G c.1587C>G	p.Leu529Leu p.Leu529Leu	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	1630/2664	1587/1641	529/546	chr16	88808224

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr16:88803800	C C	T T	1	a0001c0007t0024 a0001c0007t0024	1	HG02273.hp1 HG02273.hp1	5_prime_UTR_variant	MODIFIER	c.-32C>T c.-32C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/10	32		chr16	88803800
chr16:88808284	G G	C C	2	a0005c0011t0011 a0012c0018t0016 a0005c0011t0011 a0012c0018t0016	5	HG00639.hp1 HG02895.hp1 HG02896.hp1 others(2): Show HG00639.hp1 HG02895.hp1 HG02896.hp1 HG03195.hp1 HG03225.hp1	3_prime_UTR_variant	MODIFIER	c.6G>C c.6G>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	6		chr16	88808284
chr16:88808287	G G	A A	1	a0002c0004t0017 a0002c0004t0017	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.9G>A c.9G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	9		chr16	88808287
chr16:88808303	G G	A A	1	a0005c0011t0011 a0005c0011t0011	4	HG02895.hp1 HG02896.hp1 HG03195.hp1 others(1): Show HG02895.hp1 HG02896.hp1 HG03195.hp1 HG03225.hp1	3_prime_UTR_variant	MODIFIER	c.25G>A c.25G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	25		chr16	88808303
chr16:88808320	G G	A A	1	a0002c0002t0018 a0002c0002t0018	1	HG03579.hp1 HG03579.hp1	3_prime_UTR_variant	MODIFIER	c.42G>A c.42G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	42		chr16	88808320
chr16:88808321	C C	G G	7	a0001c0007t0007 a0001c0007t0024 a0001c0015t0010 others(4): Show a0001c0007t0007 a0001c0007t0024 a0001c0015t0010 a0001c0015t0015 a0001c0029t0015 a0002c0026t0007 a0004c0012t0010	15	HG01175.hp2 HG02258.hp1 HG02273.hp1 others(12): Show HG01175.hp2 HG02258.hp1 HG02273.hp1 HG02602.hp1 HG02886.hp2 HG02970.hp2 HG03453.hp1 HG03516.hp1 HG03710.hp1 HG03831.hp1 NA18950.hp2 NA18962.hp2 NA19083.hp2 NA20752.hp1 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.43C>G c.43C>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	43		chr16	88808321
chr16:88808370	C C	T T	31	a0001c0001t0002 a0001c0001t0003 a0001c0001t0022 others(28): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0022 a0001c0001t0023 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0003t0012 a0001c0005t0004 a0001c0006t0006 a0001c0006t0020 a0001c0007t0007 a0001c0007t0024 a0001c0010t0004 a0001c0010t0009 a0001c0015t0010 a0001c0015t0015 a0001c0019t0003 a0001c0020t0003 a0001c0021t0003 a0001c0028t0002 a0001c0029t0015 a0001c0032t0009 a0002c0026t0007 a0003c0008t0002 a0004c0012t0010 a0005c0011t0011 a0006c0017t0014 a0012c0018t0016 a0013c0022t0021 a0017c0023t0002	249	HG00408.hp1 HG00423.hp1 HG00423.hp2 others(246): Show HG00408.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01496.hp2 HG01515.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp1 HG02735.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03669.hp1 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp2 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp2 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18953.hp2 NA18954.hp2 NA18956.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp2 NA18968.hp2 NA18969.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18985.hp1 NA18987.hp1 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19005.hp2 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19067.hp2 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19091.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.92C>T c.92C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	92		chr16	88808370
chr16:88808397	C C	A A	1	a0001c0006t0020 a0001c0006t0020	1	NA21309.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.119C>A c.119C>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	119		chr16	88808397
chr16:88808408	T T	G G	2	a0012c0018t0016 a0013c0022t0021 a0012c0018t0016 a0013c0022t0021	2	HG00639.hp1 HG01243.hp1 HG00639.hp1 HG01243.hp1	3_prime_UTR_variant	MODIFIER	c.130T>G c.130T>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	130		chr16	88808408
chr16:88808436	G G	A A	1	a0013c0022t0021 a0013c0022t0021	1	HG01243.hp1 HG01243.hp1	3_prime_UTR_variant	MODIFIER	c.158G>A c.158G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	158		chr16	88808436
chr16:88808479	G G	A A	7	a0001c0007t0007 a0001c0007t0024 a0001c0015t0010 others(4): Show a0001c0007t0007 a0001c0007t0024 a0001c0015t0010 a0001c0015t0015 a0001c0029t0015 a0002c0026t0007 a0004c0012t0010	15	HG01175.hp2 HG02258.hp1 HG02273.hp1 others(12): Show HG01175.hp2 HG02258.hp1 HG02273.hp1 HG02602.hp1 HG02886.hp2 HG02970.hp2 HG03453.hp1 HG03516.hp1 HG03710.hp1 HG03831.hp1 NA18950.hp2 NA18962.hp2 NA19083.hp2 NA20752.hp1 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.201G>A c.201G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	201		chr16	88808479
chr16:88808523	C C	T T	3	a0005c0011t0011 a0012c0018t0016 a0013c0022t0021 a0005c0011t0011 a0012c0018t0016 a0013c0022t0021	6	HG00639.hp1 HG01243.hp1 HG02895.hp1 others(3): Show HG00639.hp1 HG01243.hp1 HG02895.hp1 HG02896.hp1 HG03195.hp1 HG03225.hp1	3_prime_UTR_variant	MODIFIER	c.245C>T c.245C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	245		chr16	88808523
chr16:88808580	G G	A A	2	a0001c0010t0009 a0001c0032t0009 a0001c0010t0009 a0001c0032t0009	5	HG01884.hp2 HG02258.hp2 HG02451.hp1 others(2): Show HG01884.hp2 HG02258.hp2 HG02451.hp1 HG03225.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.302G>A c.302G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	302		chr16	88808580
chr16:88808642	C C	T T	2	a0001c0010t0009 a0001c0032t0009 a0001c0010t0009 a0001c0032t0009	5	HG01884.hp2 HG02258.hp2 HG02451.hp1 others(2): Show HG01884.hp2 HG02258.hp2 HG02451.hp1 HG03225.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.364C>T c.364C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	364		chr16	88808642
chr16:88808693	CTT CTT	C C	5	a0001c0015t0010 a0002c0004t0013 a0002c0016t0013 others(2): Show a0001c0015t0010 a0002c0004t0013 a0002c0016t0013 a0004c0012t0010 a0013c0022t0021	9	HG01243.hp1 HG01433.hp2 HG02258.hp1 others(6): Show HG01243.hp1 HG01433.hp2 HG02258.hp1 HG02300.hp2 HG02886.hp2 HG02970.hp2 HG03453.hp1 HG03516.hp1 HG03834.hp1	3_prime_UTR_variant	MODIFIER	c.418_419delTT c.418_419delTT	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	418	INFO_REALIGN_3_PRIME	chr16	88808693
chr16:88808838	T T	TAA TAA	18	a0001c0003t0006 a0001c0006t0006 a0001c0006t0020 others(15): Show a0001c0003t0006 a0001c0006t0006 a0001c0006t0020 a0001c0007t0007 a0001c0007t0024 a0001c0010t0009 a0001c0015t0010 a0001c0015t0015 a0001c0029t0015 a0001c0032t0009 a0002c0004t0013 a0002c0016t0013 a0002c0026t0007 a0004c0012t0010 a0005c0011t0011 a0006c0017t0014 a0012c0018t0016 a0013c0022t0021	46	HG00639.hp1 HG01081.hp2 HG01175.hp2 others(43): Show HG00639.hp1 HG01081.hp2 HG01175.hp2 HG01243.hp1 HG01433.hp2 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02055.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02602.hp1 HG02630.hp1 HG02723.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03195.hp1 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 NA18950.hp2 NA18962.hp2 NA19030.hp1 NA19083.hp2 NA19240.hp1 NA20129.hp1 NA20752.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.561_562insAA c.561_562insAA	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	562	INFO_REALIGN_3_PRIME	chr16	88808838
chr16:88808840	C C	A A	18	a0001c0003t0006 a0001c0006t0006 a0001c0006t0020 others(15): Show a0001c0003t0006 a0001c0006t0006 a0001c0006t0020 a0001c0007t0007 a0001c0007t0024 a0001c0010t0009 a0001c0015t0010 a0001c0015t0015 a0001c0029t0015 a0001c0032t0009 a0002c0004t0013 a0002c0016t0013 a0002c0026t0007 a0004c0012t0010 a0005c0011t0011 a0006c0017t0014 a0012c0018t0016 a0013c0022t0021	46	HG00639.hp1 HG01081.hp2 HG01175.hp2 others(43): Show HG00639.hp1 HG01081.hp2 HG01175.hp2 HG01243.hp1 HG01433.hp2 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02055.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02602.hp1 HG02630.hp1 HG02723.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03195.hp1 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 NA18950.hp2 NA18962.hp2 NA19030.hp1 NA19083.hp2 NA19240.hp1 NA20129.hp1 NA20752.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.562C>A c.562C>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	562		chr16	88808840
chr16:88808840	C C	T T	1	a0001c0001t0023 a0001c0001t0023	1	NA19043.hp2 NA19043.hp2	3_prime_UTR_variant	MODIFIER	c.562C>T c.562C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	562		chr16	88808840
chr16:88808853	G G	T T	1	a0002c0002t0008 a0002c0002t0008	5	HG02027.hp1 HG02040.hp1 HG02135.hp2 others(2): Show HG02027.hp1 HG02040.hp1 HG02135.hp2 NA18954.hp1 NA18982.hp2	3_prime_UTR_variant	MODIFIER	c.575G>T c.575G>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	575		chr16	88808853
chr16:88808865	G G	A A	1	a0006c0017t0014 a0006c0017t0014	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	3_prime_UTR_variant	MODIFIER	c.587G>A c.587G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	587		chr16	88808865
chr16:88808953	A A	G G	1	a0002c0002t0019 a0002c0002t0019	1	NA18970.hp2 NA18970.hp2	3_prime_UTR_variant	MODIFIER	c.675A>G c.675A>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	675		chr16	88808953
chr16:88808955	C C	T T	2	a0001c0005t0004 a0001c0010t0004 a0001c0005t0004 a0001c0010t0004	17	HG01109.hp1 HG01192.hp1 HG02109.hp1 others(14): Show HG01109.hp1 HG01192.hp1 HG02109.hp1 HG02280.hp1 HG02451.hp2 HG02622.hp2 HG02647.hp2 HG02809.hp2 HG02895.hp2 HG02897.hp2 HG02965.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03540.hp1 HG03579.hp2	3_prime_UTR_variant	MODIFIER	c.677C>T c.677C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	677		chr16	88808955
chr16:88808962	C C	T T	2	a0001c0003t0012 a0006c0017t0014 a0001c0003t0012 a0006c0017t0014	6	HG02055.hp2 HG02145.hp2 HG02559.hp2 others(3): Show HG02055.hp2 HG02145.hp2 HG02559.hp2 HG02622.hp1 HG03098.hp2 NA19030.hp1	3_prime_UTR_variant	MODIFIER	c.684C>T c.684C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	684		chr16	88808962
chr16:88808978	T T	C C	3	a0001c0007t0007 a0001c0007t0024 a0002c0026t0007 a0001c0007t0007 a0001c0007t0024 a0002c0026t0007	8	HG01175.hp2 HG02273.hp1 HG02602.hp1 others(5): Show HG01175.hp2 HG02273.hp1 HG02602.hp1 HG03710.hp1 HG03831.hp1 NA18962.hp2 NA20752.hp1 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.700T>C c.700T>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	700		chr16	88808978
chr16:88809070	C C	T T	7	a0001c0001t0002 a0001c0001t0005 a0001c0001t0022 others(4): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0022 a0001c0003t0002 a0001c0028t0002 a0003c0008t0002 a0017c0023t0002	143	HG00280.hp1 HG00280.hp2 HG00408.hp1 others(140): Show HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00423.hp1 HG00438.hp1 HG00558.hp2 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00738.hp2 HG01069.hp2 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp2 HG01192.hp2 HG01243.hp2 HG01346.hp1 HG01358.hp2 HG01433.hp1 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp2 HG01934.hp2 HG01952.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp2 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02129.hp1 HG02132.hp2 HG02148.hp1 HG02155.hp2 HG02257.hp1 HG02293.hp2 HG02300.hp1 HG02523.hp1 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG03239.hp2 HG03492.hp1 HG03669.hp1 HG03831.hp2 HG03942.hp2 NA18612.hp1 NA18747.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp1 NA18949.hp1 NA18951.hp2 NA18953.hp2 NA18954.hp2 NA18956.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18964.hp1 NA18967.hp2 NA18969.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp2 NA18980.hp1 NA18983.hp2 NA18984.hp2 NA18987.hp1 NA18990.hp1 NA18990.hp2 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19005.hp2 NA19010.hp2 NA19012.hp1 NA19043.hp1 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19060.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19067.hp2 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19091.hp2 NA20300.hp2 NA20752.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.792C>T c.792C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	792		chr16	88809070
chr16:88809120	G G	A A	1	a0001c0001t0022 a0001c0001t0022	1	NA20905.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.842G>A c.842G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	10/10	842		chr16	88809120

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr16:88804211	A A	T T	2	a0001c0001t0002g0018 a0017c0023t0002g0018 a0001c0001t0002g0018 a0017c0023t0002g0018	2	HG01099.hp1 HG01109.hp2 HG01099.hp1 HG01109.hp2	intron_variant	MODIFIER	c.228+152A>T c.228+152A>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/9		chr16	88804211
chr16:88804232	C C	A A	1	a0001c0003t0003g0014 a0001c0003t0003g0014	2	NA18968.hp2 NA18985.hp1 NA18968.hp2 NA18985.hp1	intron_variant	MODIFIER	c.228+173C>A c.228+173C>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/9		chr16	88804232
chr16:88804245	G G	A A	1	a0001c0003t0003g0014 a0001c0003t0003g0014	2	NA18968.hp2 NA18985.hp1 NA18968.hp2 NA18985.hp1	intron_variant	MODIFIER	c.228+186G>A c.228+186G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/9		chr16	88804245
chr16:88804262	G G	GGCCCC GGCCCC	1	a0005c0011t0011g0010 a0005c0011t0011g0010	4	HG02895.hp1 HG02896.hp1 HG03195.hp1 others(1): Show HG02895.hp1 HG02896.hp1 HG03195.hp1 HG03225.hp1	intron_variant	MODIFIER	c.228+203_228+204ins others(5): Show c.228+203_228+204insGCCCC	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/9		chr16	88804262
chr16:88804463	G G	A A	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.229-82G>A c.229-82G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/9		chr16	88804463
chr16:88804532	T T	A A	2	a0001c0015t0015g0016 a0001c0029t0015g0016 a0001c0015t0015g0016 a0001c0029t0015g0016	2	NA18950.hp2 NA19083.hp2 NA18950.hp2 NA19083.hp2	intron_variant	MODIFIER	c.229-13T>A c.229-13T>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/9		chr16	88804532
chr16:88804538	C C	G G	1	a0001c0019t0003g0033 a0001c0019t0003g0033	1	HG02155.hp1 HG02155.hp1	splice_region_variant&intron_variant	LOW	c.229-7C>G c.229-7C>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	1/9		chr16	88804538
chr16:88804714	G G	C C	1	a0002c0002t0001g0011 a0002c0002t0001g0011	3	HG01167.hp1 HG02965.hp2 NA18522.hp2 HG01167.hp1 HG02965.hp2 NA18522.hp2	intron_variant	MODIFIER	c.351+47G>C c.351+47G>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	2/9		chr16	88804714
chr16:88804721	C C	T T	1	a0002c0002t0001g0032 a0002c0002t0001g0032	1	NA18963.hp2 NA18963.hp2	intron_variant	MODIFIER	c.352-41C>T c.352-41C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	2/9		chr16	88804721
chr16:88804963	G G	A A	6	a0001c0015t0010g0020 a0001c0015t0015g0016 a0001c0029t0015g0016 others(3): Show a0001c0015t0010g0020 a0001c0015t0015g0016 a0001c0029t0015g0016 a0002c0002t0001g0019 a0004c0012t0010g0009 a0005c0011t0011g0010	12	HG02258.hp1 HG02886.hp2 HG02895.hp1 others(9): Show HG02258.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02922.hp1 HG02970.hp2 HG03195.hp1 HG03225.hp1 HG03453.hp1 HG03516.hp1 NA18950.hp2 NA19083.hp2	intron_variant	MODIFIER	c.488+65G>A c.488+65G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88804963
chr16:88805061	C C	T T	1	a0005c0011t0011g0010 a0005c0011t0011g0010	4	HG02895.hp1 HG02896.hp1 HG03195.hp1 others(1): Show HG02895.hp1 HG02896.hp1 HG03195.hp1 HG03225.hp1	intron_variant	MODIFIER	c.488+163C>T c.488+163C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805061
chr16:88805124	G G	C C	1	a0001c0001t0002g0021 a0001c0001t0002g0021	1	NA19000.hp2 NA19000.hp2	intron_variant	MODIFIER	c.488+226G>C c.488+226G>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805124
chr16:88805211	C C	T T	2	a0001c0001t0003g0017 a0001c0001t0023g0017 a0001c0001t0003g0017 a0001c0001t0023g0017	2	HG03041.hp2 NA19043.hp2 HG03041.hp2 NA19043.hp2	intron_variant	MODIFIER	c.489-229C>T c.489-229C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805211
chr16:88805213	C C	T T	1	a0002c0004t0001g0031 a0002c0004t0001g0031	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.489-227C>T c.489-227C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805213
chr16:88805214	T T	G G	1	a0002c0004t0001g0031 a0002c0004t0001g0031	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.489-226T>G c.489-226T>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805214
chr16:88805225	C C	T T	2	a0001c0015t0010g0020 a0004c0012t0010g0009 a0001c0015t0010g0020 a0004c0012t0010g0009	5	HG02258.hp1 HG02886.hp2 HG02970.hp2 others(2): Show HG02258.hp1 HG02886.hp2 HG02970.hp2 HG03453.hp1 HG03516.hp1	intron_variant	MODIFIER	c.489-215C>T c.489-215C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805225
chr16:88805286	C C	T T	1	a0002c0002t0001g0030 a0002c0002t0001g0030	1	HG02004.hp2 HG02004.hp2	intron_variant	MODIFIER	c.489-154C>T c.489-154C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805286
chr16:88805413	C C	G G	1	a0001c0006t0006g0007 a0001c0006t0006g0007	6	HG01891.hp2 HG02280.hp2 HG02559.hp1 others(3): Show HG01891.hp2 HG02280.hp2 HG02559.hp1 HG02970.hp1 HG03041.hp1 HG03453.hp2	intron_variant	MODIFIER	c.489-27C>G c.489-27C>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	3/9		chr16	88805413
chr16:88806134	C C	T T	17	a0001c0005t0004g0003 a0001c0005t0004g0005 a0001c0006t0006g0007 others(14): Show a0001c0005t0004g0003 a0001c0005t0004g0005 a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 a0001c0006t0020g0013 a0001c0007t0007g0006 a0001c0007t0024g0006 a0001c0010t0004g0005 a0001c0015t0010g0020 a0001c0015t0015g0016 a0001c0029t0015g0016 a0004c0012t0010g0009 a0005c0011t0011g0010 a0006c0017t0014g0015 a0012c0018t0016g0028 a0013c0022t0021g0029	49	HG00639.hp1 HG01081.hp2 HG01109.hp1 others(46): Show HG00639.hp1 HG01081.hp2 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01891.hp2 HG02055.hp2 HG02109.hp1 HG02258.hp1 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02559.hp1 HG02602.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02723.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG03540.hp1 HG03579.hp2 HG03710.hp1 HG03831.hp1 NA18950.hp2 NA19030.hp1 NA19083.hp2 NA20752.hp1 NA20905.hp2 NA21309.hp1	intron_variant	MODIFIER	c.933+13C>T c.933+13C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/9		chr16	88806134
chr16:88806223	G G	A A	4	a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 others(1): Show a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 a0001c0006t0020g0013	10	HG01081.hp2 HG01891.hp2 HG02280.hp2 others(7): Show HG01081.hp2 HG01891.hp2 HG02280.hp2 HG02559.hp1 HG02630.hp1 HG02723.hp1 HG02970.hp1 HG03041.hp1 HG03453.hp2 NA21309.hp1	intron_variant	MODIFIER	c.933+102G>A c.933+102G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/9		chr16	88806223
chr16:88806290	T T	C C	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.933+169T>C c.933+169T>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/9		chr16	88806290
chr16:88806386	C C	G G	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.934-100C>G c.934-100C>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/9		chr16	88806386
chr16:88806428	T T	C C	17	a0001c0001t0005g0004 a0001c0003t0006g0004 a0001c0006t0006g0007 others(14): Show a0001c0001t0005g0004 a0001c0003t0006g0004 a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 a0001c0006t0020g0013 a0001c0007t0007g0006 a0001c0007t0024g0006 a0001c0015t0010g0020 a0001c0015t0015g0016 a0001c0029t0015g0016 a0002c0016t0013g0004 a0004c0012t0010g0009 a0005c0011t0011g0010 a0006c0017t0014g0015 a0012c0018t0016g0028 a0013c0022t0021g0029	40	HG00639.hp1 HG01081.hp2 HG01175.hp2 others(37): Show HG00639.hp1 HG01081.hp2 HG01175.hp2 HG01243.hp1 HG01891.hp2 HG02055.hp1 HG02055.hp2 HG02258.hp1 HG02273.hp1 HG02280.hp2 HG02300.hp2 HG02559.hp1 HG02602.hp1 HG02630.hp1 HG02723.hp1 HG02738.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03195.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 NA18950.hp2 NA19030.hp1 NA19083.hp2 NA19240.hp1 NA20129.hp1 NA20752.hp1 NA20905.hp2 NA21309.hp1	intron_variant	MODIFIER	c.934-58T>C c.934-58T>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/9		chr16	88806428
chr16:88806451	G G	A A	1	a0003c0008t0002g0022 a0003c0008t0002g0022	1	NA18941.hp2 NA18941.hp2	intron_variant	MODIFIER	c.934-35G>A c.934-35G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	6/9		chr16	88806451
chr16:88806685	G G	A A	1	a0002c0002t0001g0023 a0002c0002t0001g0023	1	HG04204.hp2 HG04204.hp2	intron_variant	MODIFIER	c.1122+11G>A c.1122+11G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/9		chr16	88806685
chr16:88806700	C C	T T	1	a0001c0001t0002g0002 a0001c0001t0002g0002	10	HG00597.hp2 HG02056.hp1 HG02074.hp2 others(7): Show HG00597.hp2 HG02056.hp1 HG02074.hp2 NA18951.hp2 NA18953.hp2 NA18987.hp1 NA18994.hp1 NA19080.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1122+26C>T c.1122+26C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/9		chr16	88806700
chr16:88806738	T T	G G	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.1122+64T>G c.1122+64T>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/9		chr16	88806738
chr16:88806815	T T	C C	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.1122+141T>C c.1122+141T>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/9		chr16	88806815
chr16:88807006	C C	A A	7	a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 others(4): Show a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 a0001c0006t0020g0013 a0005c0011t0011g0010 a0012c0018t0016g0028 a0013c0022t0021g0029	16	HG00639.hp1 HG01081.hp2 HG01243.hp1 others(13): Show HG00639.hp1 HG01081.hp2 HG01243.hp1 HG01891.hp2 HG02280.hp2 HG02559.hp1 HG02630.hp1 HG02723.hp1 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG03041.hp1 HG03195.hp1 HG03225.hp1 HG03453.hp2 NA21309.hp1	intron_variant	MODIFIER	c.1123-45C>A c.1123-45C>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/9		chr16	88807006
chr16:88807030	T T	G G	1	a0001c0001t0005g0024 a0001c0001t0005g0024	1	HG01069.hp2 HG01069.hp2	intron_variant	MODIFIER	c.1123-21T>G c.1123-21T>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/9		chr16	88807030
chr16:88807031	C C	T T	1	a0001c0001t0005g0024 a0001c0001t0005g0024	1	HG01069.hp2 HG01069.hp2	intron_variant	MODIFIER	c.1123-20C>T c.1123-20C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	7/9		chr16	88807031
chr16:88807230	G G	A A	1	a0004c0012t0010g0009 a0004c0012t0010g0009	4	HG02258.hp1 HG02886.hp2 HG03453.hp1 others(1): Show HG02258.hp1 HG02886.hp2 HG03453.hp1 HG03516.hp1	intron_variant	MODIFIER	c.1275+27G>A c.1275+27G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	8/9		chr16	88807230
chr16:88807259	C C	T T	7	a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 others(4): Show a0001c0006t0006g0007 a0001c0006t0006g0013 a0001c0006t0006g0027 a0001c0006t0020g0013 a0005c0011t0011g0010 a0012c0018t0016g0028 a0013c0022t0021g0029	16	HG00639.hp1 HG01081.hp2 HG01243.hp1 others(13): Show HG00639.hp1 HG01081.hp2 HG01243.hp1 HG01891.hp2 HG02280.hp2 HG02559.hp1 HG02630.hp1 HG02723.hp1 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG03041.hp1 HG03195.hp1 HG03225.hp1 HG03453.hp2 NA21309.hp1	intron_variant	MODIFIER	c.1276-22C>T c.1276-22C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	8/9		chr16	88807259
chr16:88807534	G G	A A	2	a0001c0005t0004g0005 a0001c0010t0004g0005 a0001c0005t0004g0005 a0001c0010t0004g0005	8	HG01192.hp1 HG02647.hp2 HG02809.hp2 others(5): Show HG01192.hp1 HG02647.hp2 HG02809.hp2 HG02895.hp2 HG02897.hp2 HG02965.hp1 HG03098.hp1 HG03540.hp1	intron_variant	MODIFIER	c.1477+52G>A c.1477+52G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807534
chr16:88807562	A A	G G	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.1477+80A>G c.1477+80A>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807562
chr16:88807604	C C	G G	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.1477+122C>G c.1477+122C>G	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807604
chr16:88807613	C C	T T	1	a0002c0002t0001g0026 a0002c0002t0001g0026	1	HG06807.hp1 HG06807.hp1	intron_variant	MODIFIER	c.1477+131C>T c.1477+131C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807613
chr16:88807673	G G	A A	1	a0002c0002t0001g0012 a0002c0002t0001g0012	3	HG00099.hp2 HG01167.hp2 HG01169.hp1 HG00099.hp2 HG01167.hp2 HG01169.hp1	intron_variant	MODIFIER	c.1477+191G>A c.1477+191G>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807673
chr16:88807784	GC GC	G G	1	a0005c0011t0011g0010 a0005c0011t0011g0010	4	HG02895.hp1 HG02896.hp1 HG03195.hp1 others(1): Show HG02895.hp1 HG02896.hp1 HG03195.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1477+304delC c.1477+304delC	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9	INFO_REALIGN_3_PRIME	chr16	88807784
chr16:88807794	C C	T T	1	a0001c0006t0006g0027 a0001c0006t0006g0027	1	HG01081.hp2 HG01081.hp2	intron_variant	MODIFIER	c.1477+312C>T c.1477+312C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807794
chr16:88807835	T T	C C	1	a0001c0001t0002g0025 a0001c0001t0002g0025	1	HG01981.hp2 HG01981.hp2	intron_variant	MODIFIER	c.1478-280T>C c.1478-280T>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807835
chr16:88807846	T T	C C	1	a0006c0017t0014g0015 a0006c0017t0014g0015	2	HG02055.hp2 NA19030.hp1 HG02055.hp2 NA19030.hp1	intron_variant	MODIFIER	c.1478-269T>C c.1478-269T>C	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807846
chr16:88807929	C C	T T	2	a0001c0015t0010g0020 a0004c0012t0010g0009 a0001c0015t0010g0020 a0004c0012t0010g0009	5	HG02258.hp1 HG02886.hp2 HG02970.hp2 others(2): Show HG02258.hp1 HG02886.hp2 HG02970.hp2 HG03453.hp1 HG03516.hp1	intron_variant	MODIFIER	c.1478-186C>T c.1478-186C>T	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807929
chr16:88807979	T T	A A	2	a0001c0010t0009g0008 a0001c0032t0009g0008 a0001c0010t0009g0008 a0001c0032t0009g0008	5	HG01884.hp2 HG02258.hp2 HG02451.hp1 others(2): Show HG01884.hp2 HG02258.hp2 HG02451.hp1 HG03225.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1478-136T>A c.1478-136T>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88807979
chr16:88808025	C C	A A	1	a0012c0018t0016g0028 a0012c0018t0016g0028	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.1478-90C>A c.1478-90C>A	CDT1	ENSG00000167513.9	transcript	ENST00000301019.9	protein_coding	9/9		chr16	88808025

Search by Genic region

Search

JoGo Online Haplotype Explorer CDT1_chr16_88798789_88814258

JoGo Local Haplotype Explorer (on iGV) CDT1_chr16_88798789_88814258

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 18)

CCoding Level Haplotype Info (Total: 37)

TTranscript Level Haplotype Info (Total: 24)

GGenebody Level Haplotype Info (Total: 33)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 37)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 55)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 75)

Haplotype Details by Sample (Haploid Level) (Total: 444)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 18)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 17)

TTranscript Level Haplotype Variants (Exon) (Total: 26)

GGenebody Level Haplotype Variants (Intron) (Total: 45)

External Link

Annotation (Repeats)

Annotation (SNP Array)