Joint Open Genome and Omics Platform (JoGo)

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geneid	4101
ensemblid	ENSG00000268606.6
hgncid	6800
symbol	MAGEA2
name	MAGE family member A2
refseq_nuc	NM_001386130.2
refseq_prot	NP_001373059.1
ensembl_nuc	ENST00000684311.1
ensembl_prot	ENSP00000507899.1
mane_status	MANE Select
chr	chrX
start	152749863
end	152753842
strand	-
ver	v1.2
region	chrX:152749863-152753842
region5000	chrX:152744863-152758842
regionname0	MAGEA2_chrX_152749863_152753842
regionname5000	MAGEA2_chrX_152744863_152758842

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	314	169	34	30	69	7	29	56	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0002	0/0	314	16	5	4	6	1	0	5	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0003	0/0	314	4	4	0	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0004	0/0	110	1	0	0	1	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0005	0/0	314	1	0	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	945	168	34	30	68	7	29	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
c0002	0/0	945	11	0	4	6	1	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
c0003	0/0	945	5	5	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
c0004	0/0	945	4	4	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
c0005	0/0	945	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
c0006	0/0	945	1	0	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
c0007	0/0	947	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	942	165	36	31	64	7	27	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0002	0/0	942	11	0	4	6	1	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0003	0/0	942	3	3	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0004	0/0	942	2	0	0	2	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0005	0/0	943	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0006	0/0	941	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0007	0/0	944	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0008	0/0	942	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0009	0/0	942	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0010	0/0	942	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0011	0/0	943	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0012	0/0	943	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0013	0/0	942	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
t0014	0/0	942	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	65	9	7	37	1	11	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0002	0/0	48	3	20	12	6	7	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0003	0/0	12	0	1	5	0	6	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0004	0/0	11	0	4	6	1	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0005	0/0	7	6	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0006	0/0	4	4	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0007	0/0	3	3	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0008	0/0	3	0	0	3	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0009	0/0	3	3	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0010	0/0	3	3	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0011	0/0	2	2	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0012	0/0	2	0	0	2	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0013	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0014	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0015	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0016	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0017	0/0	1	0	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0018	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0019	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0020	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0021	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0022	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0023	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0024	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0025	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0026	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0027	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0028	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0029	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0030	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0031	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0032	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0033	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0034	0/0	1	0	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0035	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0036	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0037	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0038	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0039	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
g0040	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	945	168	34	30	68	7	29	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0005	0/0	945	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0002c0002	0/0	945	11	0	4	6	1	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0002c0003	0/0	945	5	5	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0003c0004	0/0	945	4	4	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0004c0007	0/0	947	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0005c0006	0/0	945	1	0	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1886	156	29	30	63	7	27	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0003	0/0	1886	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0004	0/0	1886	2	0	0	2	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0005	0/0	1887	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0006	0/0	1885	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0008	0/0	1886	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0009	0/0	1886	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0010	0/0	1886	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0011	0/0	1887	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0012	0/0	1887	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0013	0/0	1886	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0001t0014	0/0	1886	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0001c0005t0007	0/0	1888	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0002c0002t0002	0/0	1886	11	0	4	6	1	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0002c0003t0001	0/0	1886	5	5	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0003c0004t0001	0/0	1886	2	2	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0003c0004t0003	0/0	1886	2	2	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0004c0007t0001	0/0	1888	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842
a0005c0006t0001	0/0	1886	1	0	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	copy fasta	chrX	152744863	152758842

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	65	9	7	37	1	11	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0002	0/0	48	3	20	12	6	7	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0003	0/0	12	0	1	5	0	6	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0005	0/0	7	6	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0006	0/0	4	4	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0008	0/0	3	0	0	3	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0009	0/0	3	3	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0010	0/0	3	3	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0014	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0015	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0017	0/0	1	0	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0018	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0026	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0031	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0001g0036	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0003g0030	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0004g0012	0/0	2	0	0	2	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0005g0023	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0006g0028	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0008g0032	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0009g0020	0/0	1	0	0	0	0	1	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0010g0013	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0011g0033	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0012g0024	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0013g0039	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0001t0014g0040	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0001c0005t0007g0037	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0002c0002t0002g0004	0/0	11	0	4	6	1	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0002c0003t0001g0007	0/0	3	3	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0002c0003t0001g0022	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0002c0003t0001g0038	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0003c0004t0001g0011	0/0	2	2	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0003c0004t0003g0027	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0003c0004t0003g0029	0/0	1	1	0	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0004c0007t0001g0035	0/0	1	0	0	1	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
a0005c0006t0001g0034	0/0	1	0	1	0	0	0	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0002	EUR	GBR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00099	hp2	a0001	c0001	t0001	g0002	EUR	GBR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00280	hp1	a0002	c0002	t0002	g0004	EUR	FIN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00673	hp1	a0001	c0001	t0001	g0021	EAS	CHS	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00738	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00741	hp1	a0002	c0002	t0002	g0004	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG00741	hp2	a0001	c0001	t0001	g0003	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01070	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01071	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01099	hp1	a0001	c0001	t0001	g0017	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01109	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01168	hp1	a0002	c0002	t0002	g0004	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01168	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01192	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01243	hp1	a0001	c0001	t0001	g0005	AMR	PUR	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01256	hp1	a0002	c0002	t0002	g0004	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01257	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01257	hp2	a0001	c0001	t0001	g0002	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01258	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01261	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01346	hp1	a0002	c0002	t0002	g0004	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01496	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01496	hp2	a0005	c0006	t0001	g0034	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01515	hp1	a0001	c0001	t0001	g0002	EUR	IBS	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01517	hp1	a0001	c0001	t0001	g0002	EUR	IBS	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01517	hp2	a0001	c0001	t0001	g0002	EUR	IBS	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01884	hp1	a0001	c0001	t0006	g0028	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01884	hp2	a0003	c0004	t0003	g0029	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01891	hp1	a0001	c0001	t0001	g0002	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01891	hp2	a0001	c0001	t0001	g0006	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01928	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01943	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01975	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01975	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01981	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01981	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02004	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02004	hp2	a0001	c0001	t0001	g0002	AMR	PEL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02071	hp1	a0002	c0002	t0002	g0004	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02080	hp2	a0001	c0001	t0014	g0040	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02129	hp1	a0001	c0001	t0004	g0012	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02258	hp1	a0001	c0001	t0001	g0009	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02280	hp2	a0002	c0003	t0001	g0007	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02572	hp1	a0002	c0003	t0001	g0022	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02602	hp1	a0001	c0001	t0001	g0003	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02630	hp1	a0002	c0003	t0001	g0038	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02630	hp2	a0001	c0001	t0001	g0036	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02647	hp1	a0001	c0001	t0001	g0005	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02683	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02683	hp2	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02735	hp1	a0001	c0001	t0001	g0003	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02738	hp1	a0001	c0001	t0001	g0014	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02818	hp1	a0001	c0001	t0001	g0006	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02818	hp2	a0001	c0001	t0001	g0002	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02965	hp1	a0001	c0001	t0001	g0009	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02970	hp1	a0001	c0001	t0001	g0010	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02970	hp2	a0001	c0001	t0001	g0006	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02976	hp2	a0001	c0001	t0003	g0030	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03041	hp2	a0003	c0004	t0001	g0011	AFR	GWD	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03130	hp1	a0001	c0001	t0008	g0032	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03139	hp1	a0001	c0001	t0001	g0005	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03195	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03195	hp2	a0003	c0004	t0001	g0011	AFR	ESN	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03209	hp1	a0001	c0001	t0001	g0006	AFR	MSL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03239	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03239	hp2	a0001	c0001	t0001	g0003	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03453	hp1	a0001	c0001	t0001	g0010	AFR	MSL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03453	hp2	a0001	c0001	t0001	g0005	AFR	MSL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03486	hp1	a0001	c0001	t0010	g0013	AFR	MSL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03486	hp2	a0003	c0004	t0003	g0027	AFR	MSL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03579	hp1	a0001	c0001	t0001	g0010	AFR	MSL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03669	hp1	a0001	c0001	t0001	g0003	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03704	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03704	hp2	a0001	c0001	t0001	g0026	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03831	hp1	a0001	c0001	t0001	g0003	SAS	BEB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03927	hp1	a0001	c0001	t0005	g0023	SAS	BEB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03927	hp2	a0001	c0001	t0001	g0002	SAS	BEB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03942	hp1	a0001	c0001	t0001	g0003	SAS	BEB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG04115	hp1	a0001	c0001	t0001	g0002	SAS	STU	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG04184	hp2	a0001	c0001	t0001	g0002	SAS	BEB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG04199	hp1	a0001	c0001	t0001	g0031	SAS	STU	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG04228	hp1	a0001	c0001	t0009	g0020	SAS	STU	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18612	hp1	a0001	c0001	t0004	g0012	EAS	CHB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18940	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18942	hp1	a0001	c0005	t0007	g0037	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18942	hp2	a0002	c0002	t0002	g0004	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18944	hp1	a0002	c0002	t0002	g0004	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18947	hp1	a0001	c0001	t0001	g0015	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18950	hp1	a0002	c0002	t0002	g0004	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18950	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18952	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18954	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18954	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18961	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18963	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18963	hp2	a0001	c0001	t0001	g0008	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18965	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18970	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18971	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18979	hp1	a0001	c0001	t0001	g0008	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18988	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18989	hp1	a0001	c0001	t0012	g0024	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18994	hp1	a0001	c0001	t0001	g0025	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19000	hp1	a0001	c0001	t0001	g0018	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19004	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19005	hp1	a0001	c0001	t0001	g0008	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19007	hp1	a0001	c0001	t0001	g0019	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19030	hp1	a0002	c0003	t0001	g0007	AFR	LWK	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19030	hp2	a0001	c0001	t0001	g0005	AFR	LWK	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19055	hp1	a0002	c0002	t0002	g0004	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19056	hp1	a0002	c0002	t0002	g0004	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19058	hp1	a0001	c0001	t0011	g0033	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19064	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19066	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19077	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19077	hp2	a0001	c0001	t0001	g0016	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19079	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19084	hp2	a0004	c0007	t0001	g0035	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19089	hp1	a0001	c0001	t0001	g0003	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19090	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19240	hp1	a0001	c0001	t0001	g0009	AFR	YRI	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA20752	hp1	a0001	c0001	t0001	g0002	EUR	TSI	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG01123	hp2	a0001	c0001	t0001	g0002	AMR	CLM	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG02486	hp1	a0001	c0001	t0001	g0005	AFR	ACB	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
HG06807	hp2	a0001	c0001	t0001	g0005	AFR	USA	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA20300	hp2	a0002	c0003	t0001	g0007	AFR	USA	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA21309	hp1	a0001	c0001	t0013	g0039	AFR	LWK	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842
NA21309	hp2	a0001	c0001	t0001	g0002	AFR	LWK	MAGEA2_chrX_152744863_152758842	MAGEA2	chrX	152744863	152758842

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:152750623	C C	G G	1	a0002 a0002	16	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(13): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG02071.hp1 HG02280.hp2 HG02572.hp1 HG02630.hp1 NA18942.hp2 NA18944.hp1 NA18950.hp1 NA19030.hp1 NA19055.hp1 NA19056.hp1 NA20300.hp2	missense_variant	MODERATE	c.741G>C c.741G>C	p.Met247Ile p.Met247Ile	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	1126/1886	741/945	247/314	chrX	152750623
chrX:152750624	A A	G G	1	a0002 a0002	16	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(13): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG02071.hp1 HG02280.hp2 HG02572.hp1 HG02630.hp1 NA18942.hp2 NA18944.hp1 NA18950.hp1 NA19030.hp1 NA19055.hp1 NA19056.hp1 NA20300.hp2	missense_variant	MODERATE	c.740T>C c.740T>C	p.Met247Thr p.Met247Thr	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	1125/1886	740/945	247/314	chrX	152750624
chrX:152750660	T T	TC TC	1	a0004 a0004	1	NA19084.hp2 NA19084.hp2	frameshift_variant	HIGH	c.703dupG c.703dupG	p.Glu235fs p.Glu235fs	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	1088/1886	703/945	235/314	chrX	152750660
chrX:152750855	A A	T T	1	a0003 a0003	4	HG01884.hp2 HG03041.hp2 HG03195.hp2 others(1): Show HG01884.hp2 HG03041.hp2 HG03195.hp2 HG03486.hp2	missense_variant	MODERATE	c.509T>A c.509T>A	p.Val170Asp p.Val170Asp	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	894/1886	509/945	170/314	chrX	152750855
chrX:152751049	G G	C C	1	a0005 a0005	1	HG01496.hp2 HG01496.hp2	missense_variant	MODERATE	c.315C>G c.315C>G	p.Phe105Leu p.Phe105Leu	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	700/1886	315/945	105/314	chrX	152751049
chrX:152751081	G G	GC GC	1	a0004 a0004	1	NA19084.hp2 NA19084.hp2	frameshift_variant	HIGH	c.282dupG c.282dupG	p.Pro95fs p.Pro95fs	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	667/1886	282/945	94/314	chrX	152751081
chrX:152751425	A A	AG AG	1	a0001 a0001	1	NA18942.hp1 NA18942.hp1	splice_region_variant	LOW	c.-63dupC c.-63dupC		MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5				chrX	152751425

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:152750428	T T	C C	1	a0001c0005 a0001c0005	1	NA18942.hp1 NA18942.hp1	synonymous_variant	LOW	c.936A>G c.936A>G	p.Gly312Gly p.Gly312Gly	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	1321/1886	936/945	312/314	chrX	152750428
chrX:152750616	G G	A A	1	a0002c0002 a0002c0002	11	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(8): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG02071.hp1 NA18942.hp2 NA18944.hp1 NA18950.hp1 NA19055.hp1 NA19056.hp1	synonymous_variant	LOW	c.748C>T c.748C>T	p.Leu250Leu p.Leu250Leu	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	1133/1886	748/945	250/314	chrX	152750616
chrX:152750872	G G	A A	1	a0002c0002 a0002c0002	11	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(8): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG02071.hp1 NA18942.hp2 NA18944.hp1 NA18950.hp1 NA19055.hp1 NA19056.hp1	synonymous_variant	LOW	c.492C>T c.492C>T	p.Ile164Ile p.Ile164Ile	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	877/1886	492/945	164/314	chrX	152750872

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:152749869	G G	A A	1	a0001c0001t0004 a0001c0001t0004	2	HG02129.hp1 NA18612.hp1 HG02129.hp1 NA18612.hp1	3_prime_UTR_variant	MODIFIER	c.550C>T c.550C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	550	chrX	152749869
chrX:152749966	G G	A A	1	a0001c0001t0009 a0001c0001t0009	1	HG04228.hp1 HG04228.hp1	3_prime_UTR_variant	MODIFIER	c.453C>T c.453C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	453	chrX	152749966
chrX:152750018	T T	C C	1	a0001c0001t0010 a0001c0001t0010	1	HG03486.hp1 HG03486.hp1	3_prime_UTR_variant	MODIFIER	c.401A>G c.401A>G	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	401	chrX	152750018
chrX:152750089	T T	TC TC	1	a0001c0001t0011 a0001c0001t0011	1	NA19058.hp1 NA19058.hp1	3_prime_UTR_variant	MODIFIER	c.329dupG c.329dupG	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	329	chrX	152750089
chrX:152751374	G G	T T	1	a0001c0001t0008 a0001c0001t0008	1	HG03130.hp1 HG03130.hp1	5_prime_UTR_variant	MODIFIER	c.-11C>A c.-11C>A	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	5/5	11	chrX	152751374
chrX:152752445	C C	T T	2	a0001c0001t0003 a0003c0004t0003 a0001c0001t0003 a0003c0004t0003	3	HG01884.hp2 HG02976.hp2 HG03486.hp2 HG01884.hp2 HG02976.hp2 HG03486.hp2	5_prime_UTR_variant	MODIFIER	c.-183G>A c.-183G>A	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/5	1082	chrX	152752445
chrX:152752453	T T	TG TG	1	a0001c0001t0012 a0001c0001t0012	1	NA18989.hp1 NA18989.hp1	5_prime_UTR_variant	MODIFIER	c.-192dupC c.-192dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/5	1091	chrX	152752453
chrX:152752455	G G	GT GT	1	a0001c0005t0007 a0001c0005t0007	1	NA18942.hp1 NA18942.hp1	5_prime_UTR_variant	MODIFIER	c.-194_-193insA c.-194_-193insA	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/5	1093	chrX	152752455
chrX:152752466	G G	A A	1	a0002c0002t0002 a0002c0002t0002	11	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(8): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG02071.hp1 NA18942.hp2 NA18944.hp1 NA18950.hp1 NA19055.hp1 NA19056.hp1	5_prime_UTR_variant	MODIFIER	c.-204C>T c.-204C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/5	1103	chrX	152752466
chrX:152753348	TC TC	T T	1	a0001c0001t0006 a0001c0001t0006	1	HG01884.hp1 HG01884.hp1	5_prime_UTR_variant	MODIFIER	c.-288delG c.-288delG	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/5	1986	chrX	152753348
chrX:152753351	C C	CG CG	1	a0001c0001t0005 a0001c0001t0005	1	HG03927.hp1 HG03927.hp1	5_prime_UTR_variant	MODIFIER	c.-291dupC c.-291dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/5	1989	chrX	152753351
chrX:152753824	G G	A A	1	a0001c0001t0013 a0001c0001t0013	1	NA21309.hp1 NA21309.hp1	5_prime_UTR_variant	MODIFIER	c.-367C>T c.-367C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/5	2461	chrX	152753824
chrX:152753830	G G	A A	1	a0001c0001t0014 a0001c0001t0014	1	HG02080.hp2 HG02080.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-373C>T c.-373C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/5		chrX	152753830

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:152751588	T T	TG TG	1	a0004c0007t0001g0035 a0004c0007t0001g0035	1	NA19084.hp2 NA19084.hp2	intron_variant	MODIFIER	c.-131-15dupC c.-131-15dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152751588
chrX:152751773	C C	T T	1	a0001c0001t0005g0023 a0001c0001t0005g0023	1	HG03927.hp1 HG03927.hp1	intron_variant	MODIFIER	c.-131-199G>A c.-131-199G>A	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152751773
chrX:152751886	G G	C C	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.-131-312C>G c.-131-312C>G	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152751886
chrX:152751888	C C	G G	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.-131-314G>C c.-131-314G>C	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152751888
chrX:152751893	C C	G G	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.-131-319G>C c.-131-319G>C	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152751893
chrX:152751941	T T	TC TC	1	a0001c0001t0005g0023 a0001c0001t0005g0023	1	HG03927.hp1 HG03927.hp1	intron_variant	MODIFIER	c.-131-368dupG c.-131-368dupG	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152751941
chrX:152751989	A A	C C	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA19007.hp1 NA19007.hp1	intron_variant	MODIFIER	c.-132+405T>G c.-132+405T>G	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152751989
chrX:152752318	A A	C C	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	NA18947.hp1 NA18947.hp1	intron_variant	MODIFIER	c.-132+76T>G c.-132+76T>G	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152752318
chrX:152752377	A A	G G	26	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0036 a0001c0001t0003g0030 a0001c0001t0005g0023 a0001c0001t0006g0028 a0001c0001t0009g0020 a0001c0001t0010g0013 a0001c0001t0014g0040 a0002c0003t0001g0007 a0002c0003t0001g0022 a0002c0003t0001g0038 a0003c0004t0003g0027 a0003c0004t0003g0029	118	HG00140.hp1 HG00597.hp1 HG00597.hp2 others(115): Show HG00140.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00642.hp1 HG00673.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01071.hp2 HG01099.hp1 HG01123.hp1 HG01243.hp1 HG01255.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02135.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03942.hp1 HG04184.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18967.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19084.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-132+17T>C c.-132+17T>C	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	3/4	chrX	152752377
chrX:152752532	A A	AG AG	1	a0001c0001t0005g0023 a0001c0001t0005g0023	1	HG03927.hp1 HG03927.hp1	intron_variant	MODIFIER	c.-251-20dupC c.-251-20dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752532
chrX:152752537	C C	A A	3	a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0021	14	HG00673.hp1 HG00741.hp2 HG02602.hp1 others(11): Show HG00673.hp1 HG00741.hp2 HG02602.hp1 HG02735.hp1 HG03239.hp2 HG03669.hp1 HG03831.hp1 HG03942.hp1 NA18947.hp1 NA18963.hp1 NA18965.hp1 NA18971.hp1 NA19079.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-251-24G>T c.-251-24G>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752537
chrX:152752549	A A	AC AC	4	a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0031 others(1): Show a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0031 a0001c0001t0005g0023	4	HG03927.hp1 HG04199.hp1 NA18994.hp1 others(1): Show HG03927.hp1 HG04199.hp1 NA18994.hp1 NA19000.hp1	intron_variant	MODIFIER	c.-251-37dupG c.-251-37dupG	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752549
chrX:152752552	C C	T T	5	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0003g0030 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0003g0030 a0003c0004t0003g0027 a0003c0004t0003g0029	14	HG01243.hp1 HG01884.hp2 HG01891.hp2 others(11): Show HG01243.hp1 HG01884.hp2 HG01891.hp2 HG02486.hp1 HG02647.hp1 HG02818.hp1 HG02970.hp2 HG02976.hp2 HG03139.hp1 HG03209.hp1 HG03453.hp2 HG03486.hp2 HG06807.hp2 NA19030.hp2	intron_variant	MODIFIER	c.-251-39G>A c.-251-39G>A	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752552
chrX:152752757	G G	A A	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.-251-244C>T c.-251-244C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752757
chrX:152752766	G G	A A	1	a0002c0002t0002g0004 a0002c0002t0002g0004	11	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(8): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG02071.hp1 NA18942.hp2 NA18944.hp1 NA18950.hp1 NA19055.hp1 NA19056.hp1	intron_variant	MODIFIER	c.-251-253C>T c.-251-253C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752766
chrX:152752783	T T	C C	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.-251-270A>G c.-251-270A>G	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752783
chrX:152752851	C C	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-251-338G>A c.-251-338G>A	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752851
chrX:152752866	A A	AG AG	1	a0001c0005t0007g0037 a0001c0005t0007g0037	1	NA18942.hp1 NA18942.hp1	intron_variant	MODIFIER	c.-251-354dupC c.-251-354dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152752866
chrX:152753082	C C	A A	2	a0001c0001t0001g0008 a0001c0001t0001g0016 a0001c0001t0001g0008 a0001c0001t0001g0016	4	NA18963.hp2 NA18979.hp1 NA19005.hp1 others(1): Show NA18963.hp2 NA18979.hp1 NA19005.hp1 NA19077.hp2	intron_variant	MODIFIER	c.-252+231G>T c.-252+231G>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152753082
chrX:152753280	C C	A A	1	a0001c0001t0001g0009 a0001c0001t0001g0009	3	HG02258.hp1 HG02965.hp1 NA19240.hp1 HG02258.hp1 HG02965.hp1 NA19240.hp1	intron_variant	MODIFIER	c.-252+33G>T c.-252+33G>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152753280
chrX:152753309	G G	C C	3	a0001c0001t0001g0036 a0002c0002t0002g0004 a0002c0003t0001g0022 a0001c0001t0001g0036 a0002c0002t0002g0004 a0002c0003t0001g0022	13	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(10): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG02071.hp1 HG02572.hp1 HG02630.hp2 NA18942.hp2 NA18944.hp1 NA18950.hp1 NA19055.hp1 NA19056.hp1	splice_region_variant&intron_variant	LOW	c.-252+4C>G c.-252+4C>G	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	2/4	chrX	152753309
chrX:152753400	A A	G G	1	a0003c0004t0003g0027 a0003c0004t0003g0027	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.-330-9T>C c.-330-9T>C	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753400
chrX:152753407	TG TG	T T	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA19077.hp2 NA19077.hp2	intron_variant	MODIFIER	c.-330-17delC c.-330-17delC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753407
chrX:152753432	T T	TG TG	1	a0001c0001t0005g0023 a0001c0001t0005g0023	1	HG03927.hp1 HG03927.hp1	intron_variant	MODIFIER	c.-330-42dupC c.-330-42dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753432
chrX:152753567	C C	T T	1	a0001c0001t0001g0026 a0001c0001t0001g0026	1	HG03704.hp2 HG03704.hp2	intron_variant	MODIFIER	c.-330-176G>A c.-330-176G>A	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753567
chrX:152753639	C C	CG CG	3	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0025 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0025	3	HG02738.hp1 NA18947.hp1 NA18994.hp1 HG02738.hp1 NA18947.hp1 NA18994.hp1	intron_variant	MODIFIER	c.-331+148dupC c.-331+148dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753639
chrX:152753649	C C	CG CG	1	a0001c0001t0012g0024 a0001c0001t0012g0024	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.-331+138dupC c.-331+138dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753649
chrX:152753670	C C	G G	18	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0008 others(15): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0005g0023 a0001c0001t0009g0020 a0001c0001t0010g0013 a0001c0001t0014g0040 a0002c0003t0001g0007 a0002c0003t0001g0022 a0002c0003t0001g0038	99	HG00140.hp1 HG00597.hp1 HG00597.hp2 others(96): Show HG00140.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00642.hp1 HG00673.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01071.hp2 HG01099.hp1 HG01123.hp1 HG01255.hp1 HG01346.hp2 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02135.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02572.hp1 HG02602.hp1 HG02630.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG02965.hp1 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03195.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03942.hp1 HG04184.hp1 HG04228.hp1 HG06807.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18967.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19012.hp1 NA19030.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19084.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-331+118G>C c.-331+118G>C	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753670
chrX:152753734	T T	TG TG	1	a0001c0005t0007g0037 a0001c0005t0007g0037	1	NA18942.hp1 NA18942.hp1	intron_variant	MODIFIER	c.-331+53dupC c.-331+53dupC	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753734
chrX:152753761	C C	T T	1	a0001c0001t0010g0013 a0001c0001t0010g0013	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-331+27G>A c.-331+27G>A	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753761
chrX:152753781	G G	A A	2	a0001c0001t0001g0006 a0002c0003t0001g0038 a0001c0001t0001g0006 a0002c0003t0001g0038	5	HG01891.hp2 HG02630.hp1 HG02818.hp1 others(2): Show HG01891.hp2 HG02630.hp1 HG02818.hp1 HG02970.hp2 HG03209.hp1	splice_region_variant&intron_variant	LOW	c.-331+7C>T c.-331+7C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/4	chrX	152753781

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JoGo Online Haplotype Explorer MAGEA2_chrX_152744863_152758842

JoGo Local Haplotype Explorer (on iGV) MAGEA2_chrX_152744863_152758842

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 7)

TTranscript Level Haplotype Info (Total: 14)

GGenebody Level Haplotype Info (Total: 40)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 7)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 19)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 40)

Haplotype Details by Sample (Haploid Level) (Total: 191)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 7)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 3)

TTranscript Level Haplotype Variants (Exon) (Total: 13)

GGenebody Level Haplotype Variants (Intron) (Total: 31)

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Annotation (Repeats)

Annotation (SNP Array)