Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
SMS_chrX_21935709_21999837	21966212	CT CT	C C	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0047 a0001c0001t0009g0047	1	298	0.0034	-1	c.50- others(7): Show c.50-980delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	1/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21968555	CG CG	C C	intron_variant intron_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0245 a0001c0001t0001g0245	1	298	0.0034	-1	c.170 others(9): Show c.170+1244delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21969177	AC AC	A A	intron_variant intron_variant	MODIFIER	NA19074.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0049	1	298	0.0034	-1	c.170 others(9): Show c.170+1865delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21970123	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.171 others(9): Show c.171-1772delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21970718	GC GC	G G	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.171 others(9): Show c.171-1177delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21970745	GT GT	G G	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01070.hp1 HG01071.hp2 others(12): Show HG01069.hp1 HG01070.hp1 HG01071.hp2 HG01109.hp1 HG01243.hp1 HG02273.hp1 HG02622.hp1 HG03831.hp1 HG04199.hp1 NA18906.hp2 NA18965.hp1 NA19012.hp1 NA19058.hp1 NA19089.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0002c0003t0002	a0001c0001t0001g0077 a0001c0001t0001g0089 a0001c0001t0001g0245 others(12): Show a0001c0001t0001g0077 a0001c0001t0001g0089 a0001c0001t0001g0245 a0001c0001t0001g0252 a0001c0001t0002g0135 a0001c0001t0002g0160 a0001c0001t0003g0133 a0001c0001t0003g0147 a0001c0001t0003g0148 a0001c0001t0003g0150 a0001c0001t0003g0259 a0001c0001t0003g0260 a0001c0001t0003g0265 a0001c0001t0003g0268 a0002c0003t0002g0193	15	298	0.0503	-1	c.171 others(9): Show c.171-1133delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21971199	GA GA	G G	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.171 others(8): Show c.171-687delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21971343	TA TA	T T	intron_variant intron_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0039	1	298	0.0034	-1	c.171 others(8): Show c.171-549delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21971372	TA TA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00323.hp1 others(86): Show HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00597.hp2 HG00621.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01070.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01256.hp1 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG02055.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02257.hp1 HG02280.hp2 HG02293.hp1 HG02486.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03486.hp1 HG03579.hp1 HG03704.hp1 HG04184.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18940.hp1 NA18947.hp1 NA18955.hp1 NA18961.hp1 NA18973.hp2 NA18978.hp1 NA18988.hp1 NA18995.hp1 NA18997.hp1 NA18999.hp1 NA18999.hp2 NA19002.hp2 NA19010.hp2 NA19030.hp1 NA19060.hp1 NA19066.hp1 NA19075.hp1 NA19077.hp2 NA19080.hp1 NA19080.hp2 NA19084.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0003c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0015 a0001c0002t0003 a0001c0005t0001 a0003c0006t0001	a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0105 others(86): Show a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0105 a0001c0001t0001g0117 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0250 a0001c0001t0001g0254 a0001c0001t0002g0116 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0136 a0001c0001t0002g0138 a0001c0001t0002g0166 a0001c0001t0002g0180 a0001c0001t0002g0267 a0001c0001t0002g0276 a0001c0001t0002g0277 a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0011 a0001c0001t0003g0012 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0113 a0001c0001t0003g0115 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0122 a0001c0001t0003g0157 a0001c0001t0003g0158 a0001c0001t0003g0159 a0001c0001t0003g0215 a0001c0001t0003g0271 a0001c0001t0003g0292 a0001c0001t0004g0028 a0001c0001t0004g0043 a0001c0001t0004g0062 a0001c0001t0004g0063 a0001c0001t0004g0064 a0001c0001t0004g0066 a0001c0001t0004g0067 a0001c0001t0004g0068 a0001c0001t0004g0069 a0001c0001t0004g0071 a0001c0001t0004g0074 a0001c0001t0004g0102 a0001c0001t0004g0103 a0001c0001t0004g0104 a0001c0001t0004g0118 a0001c0001t0004g0141 a0001c0001t0004g0142 a0001c0001t0004g0143 a0001c0001t0004g0144 a0001c0001t0004g0163 a0001c0001t0004g0174 a0001c0001t0005g0013 a0001c0001t0005g0132 a0001c0001t0005g0261 a0001c0001t0005g0262 a0001c0001t0005g0263 a0001c0001t0005g0264 a0001c0001t0005g0266 a0001c0001t0005g0272 a0001c0001t0005g0273 a0001c0001t0005g0274 a0001c0001t0005g0275 a0001c0001t0005g0278 a0001c0001t0005g0279 a0001c0001t0005g0280 a0001c0001t0005g0281 a0001c0001t0005g0282 a0001c0001t0005g0283 a0001c0001t0006g0046 a0001c0001t0006g0058 a0001c0001t0006g0083 a0001c0001t0006g0086 a0001c0001t0007g0226 a0001c0001t0010g0255 a0001c0001t0011g0139 a0001c0001t0015g0004 a0001c0002t0003g0149 a0001c0002t0003g0169 a0001c0005t0001g0219 a0003c0006t0001g0230	89	298	0.2987	-1	c.171 others(8): Show c.171-523delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21971692	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.171 others(8): Show c.171-203delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21971792	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.171 others(8): Show c.171-102delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21971852	GC GC	G G	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.171 others(7): Show c.171-41delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	2/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21972104	TC TC	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.264 others(8): Show c.264+117delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	3/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21972327	AG AG	A A	intron_variant intron_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0058 a0001c0001t0006g0058	1	298	0.0034	-1	c.265 others(8): Show c.265-177delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	3/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21972480	GC GC	G G	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0115 a0001c0001t0003g0115	1	298	0.0034	-1	c.265 others(7): Show c.265-24delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	3/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21972570	CG CG	C C	splice_donor_variant others(1): Show splice_donor_variant intron_variant	HIGH	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.329 others(6): Show c.329+1delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21972893	TG TG	T T	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0115 a0001c0001t0003g0115	1	298	0.0034	-1	c.329 others(8): Show c.329+325delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21972916	CA CA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp1 HG00438.hp2 others(42): Show HG00140.hp1 HG00323.hp1 HG00438.hp2 HG01070.hp1 HG01070.hp2 HG01169.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02280.hp2 HG02615.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03486.hp1 HG03491.hp1 HG03491.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18995.hp1 NA18999.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp1 NA19091.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0005 a0003c0006 a0001c0001 a0001c0005 a0003c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0011 a0001c0005t0001 a0003c0006t0001	a0001c0001t0001g0081 a0001c0001t0001g0108 a0001c0001t0001g0117 others(42): Show a0001c0001t0001g0081 a0001c0001t0001g0108 a0001c0001t0001g0117 a0001c0001t0001g0145 a0001c0001t0001g0178 a0001c0001t0001g0218 a0001c0001t0001g0231 a0001c0001t0001g0250 a0001c0001t0001g0254 a0001c0001t0002g0116 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0136 a0001c0001t0002g0138 a0001c0001t0002g0155 a0001c0001t0002g0166 a0001c0001t0002g0170 a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0012 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0113 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0122 a0001c0001t0003g0148 a0001c0001t0003g0157 a0001c0001t0003g0158 a0001c0001t0003g0215 a0001c0001t0003g0271 a0001c0001t0003g0292 a0001c0001t0004g0043 a0001c0001t0004g0068 a0001c0001t0004g0103 a0001c0001t0004g0118 a0001c0001t0004g0141 a0001c0001t0004g0142 a0001c0001t0004g0143 a0001c0001t0004g0163 a0001c0001t0005g0013 a0001c0001t0005g0132 a0001c0001t0011g0139 a0001c0005t0001g0219 a0003c0006t0001g0230	45	298	0.1510	-1	c.329 others(8): Show c.329+369delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21973527	GT GT	G G	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.329 others(8): Show c.329+958delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21973678	GA GA	G G	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.329 others(9): Show c.329+1111delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21973738	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.329 others(9): Show c.329+1169delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21973868	TG TG	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.329 others(9): Show c.329+1299delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21974038	TC TC	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.329 others(9): Show c.329+1470delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21974856	CT CT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(223): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02615.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02723.hp1 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp1 NA18997.hp1 NA18997.hp2 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp2 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0002c0003 a0004c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0001c0002t0003 a0001c0005t0001 a0002c0003t0002 a0004c0004t0013	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(222): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0065 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0216 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0229 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0238 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0284 a0001c0001t0001g0294 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0002g0005 a0001c0001t0002g0010 a0001c0001t0002g0125 a0001c0001t0002g0129 a0001c0001t0002g0131 a0001c0001t0002g0135 a0001c0001t0002g0136 a0001c0001t0002g0146 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0166 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0179 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0197 a0001c0001t0002g0198 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0002g0208 a0001c0001t0002g0209 a0001c0001t0002g0210 a0001c0001t0002g0211 a0001c0001t0002g0212 a0001c0001t0002g0214 a0001c0001t0002g0220 a0001c0001t0002g0221 a0001c0001t0002g0258 a0001c0001t0002g0267 a0001c0001t0002g0276 a0001c0001t0002g0277 a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0011 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0159 a0001c0001t0003g0215 a0001c0001t0003g0271 a0001c0001t0003g0291 a0001c0001t0003g0292 a0001c0001t0004g0016 a0001c0001t0004g0028 a0001c0001t0004g0043 a0001c0001t0004g0062 a0001c0001t0004g0063 a0001c0001t0004g0064 a0001c0001t0004g0066 a0001c0001t0004g0067 a0001c0001t0004g0068 a0001c0001t0004g0069 a0001c0001t0004g0071 a0001c0001t0004g0074 a0001c0001t0004g0102 a0001c0001t0004g0103 a0001c0001t0004g0104 a0001c0001t0004g0118 a0001c0001t0004g0142 a0001c0001t0004g0143 a0001c0001t0004g0144 a0001c0001t0004g0163 a0001c0001t0004g0174 a0001c0001t0005g0261 a0001c0001t0005g0262 a0001c0001t0005g0263 a0001c0001t0005g0264 a0001c0001t0005g0266 a0001c0001t0005g0273 a0001c0001t0005g0274 a0001c0001t0005g0275 a0001c0001t0005g0278 a0001c0001t0005g0279 a0001c0001t0005g0280 a0001c0001t0005g0281 a0001c0001t0005g0282 a0001c0001t0005g0283 a0001c0001t0006g0046 a0001c0001t0006g0058 a0001c0001t0006g0083 a0001c0001t0006g0086 a0001c0001t0007g0026 a0001c0001t0007g0239 a0001c0001t0007g0286 a0001c0001t0008g0237 a0001c0001t0009g0047 a0001c0001t0011g0139 a0001c0001t0012g0048 a0001c0001t0015g0004 a0001c0002t0003g0149 a0001c0002t0003g0169 a0001c0005t0001g0219 a0002c0003t0002g0193 a0004c0004t0013g0293	226	298	0.7584	-1	c.330 others(9): Show c.330-2185delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21975085	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.330 others(9): Show c.330-1972delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21975328	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.330 others(9): Show c.330-1726delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21975562	GC GC	G G	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.330 others(9): Show c.330-1497delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21975774	CG CG	C C	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.330 others(9): Show c.330-1285delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21975791	GT GT	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG02027.hp1 NA19011.hp2 HG00408.hp2 HG02027.hp1 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0188 a0001c0001t0002g0183 a0001c0001t0002g0203 a0001c0001t0001g0188 a0001c0001t0002g0183 a0001c0001t0002g0203	3	298	0.0101	-1	c.330 others(9): Show c.330-1268delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21976226	TG TG	T T	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0193 a0002c0003t0002g0193	1	298	0.0034	-1	c.330 others(8): Show c.330-833delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21976588	GA GA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(169): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp2 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01256.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01943.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02155.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03516.hp1 HG03579.hp1 HG03688.hp1 HG03704.hp1 HG03831.hp1 HG03927.hp1 HG04184.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18943.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18972.hp1 NA18973.hp1 NA18973.hp2 NA18978.hp1 NA18978.hp2 NA18982.hp1 NA18988.hp1 NA18990.hp1 NA18992.hp2 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp2 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19074.hp1 NA19075.hp1 NA19077.hp2 NA19078.hp1 NA19080.hp1 NA19080.hp2 NA19084.hp1 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20805.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0003c0006 a0004c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0002t0003 a0001c0005t0001 a0003c0006t0001 a0004c0004t0013	a0001c0001t0001g0040 a0001c0001t0001g0045 a0001c0001t0001g0070 others(169): Show a0001c0001t0001g0040 a0001c0001t0001g0045 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0092 a0001c0001t0001g0105 a0001c0001t0001g0117 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0164 a0001c0001t0001g0188 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0222 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0250 a0001c0001t0001g0254 a0001c0001t0001g0297 a0001c0001t0002g0005 a0001c0001t0002g0007 a0001c0001t0002g0010 a0001c0001t0002g0112 a0001c0001t0002g0114 a0001c0001t0002g0116 a0001c0001t0002g0123 a0001c0001t0002g0125 a0001c0001t0002g0126 a0001c0001t0002g0127 a0001c0001t0002g0129 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0136 a0001c0001t0002g0137 a0001c0001t0002g0138 a0001c0001t0002g0151 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0156 a0001c0001t0002g0166 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0186 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0197 a0001c0001t0002g0198 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0002g0209 a0001c0001t0002g0210 a0001c0001t0002g0211 a0001c0001t0002g0212 a0001c0001t0002g0220 a0001c0001t0002g0267 a0001c0001t0002g0276 a0001c0001t0002g0277 a0001c0001t0002g0287 a0001c0001t0002g0288 a0001c0001t0002g0289 a0001c0001t0002g0290 a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0011 a0001c0001t0003g0012 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0113 a0001c0001t0003g0115 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0122 a0001c0001t0003g0124 a0001c0001t0003g0128 a0001c0001t0003g0133 a0001c0001t0003g0134 a0001c0001t0003g0147 a0001c0001t0003g0148 a0001c0001t0003g0150 a0001c0001t0003g0152 a0001c0001t0003g0154 a0001c0001t0003g0157 a0001c0001t0003g0158 a0001c0001t0003g0159 a0001c0001t0003g0165 a0001c0001t0003g0167 a0001c0001t0003g0168 a0001c0001t0003g0175 a0001c0001t0003g0259 a0001c0001t0003g0260 a0001c0001t0003g0265 a0001c0001t0003g0268 a0001c0001t0003g0269 a0001c0001t0003g0270 a0001c0001t0003g0271 a0001c0001t0003g0285 a0001c0001t0003g0291 a0001c0001t0003g0292 a0001c0001t0004g0017 a0001c0001t0004g0028 a0001c0001t0004g0043 a0001c0001t0004g0062 a0001c0001t0004g0063 a0001c0001t0004g0064 a0001c0001t0004g0066 a0001c0001t0004g0067 a0001c0001t0004g0068 a0001c0001t0004g0071 a0001c0001t0004g0074 a0001c0001t0004g0102 a0001c0001t0004g0103 a0001c0001t0004g0104 a0001c0001t0004g0109 a0001c0001t0004g0118 a0001c0001t0004g0141 a0001c0001t0004g0142 a0001c0001t0004g0143 a0001c0001t0004g0144 a0001c0001t0004g0163 a0001c0001t0004g0174 a0001c0001t0005g0013 a0001c0001t0005g0132 a0001c0001t0005g0261 a0001c0001t0005g0262 a0001c0001t0005g0263 a0001c0001t0005g0264 a0001c0001t0005g0266 a0001c0001t0005g0272 a0001c0001t0005g0273 a0001c0001t0005g0274 a0001c0001t0005g0275 a0001c0001t0005g0278 a0001c0001t0005g0279 a0001c0001t0005g0280 a0001c0001t0005g0281 a0001c0001t0005g0282 a0001c0001t0005g0283 a0001c0001t0006g0014 a0001c0001t0006g0046 a0001c0001t0006g0058 a0001c0001t0006g0082 a0001c0001t0006g0083 a0001c0001t0006g0086 a0001c0001t0006g0119 a0001c0001t0007g0226 a0001c0001t0010g0255 a0001c0001t0011g0139 a0001c0001t0014g0213 a0001c0001t0015g0004 a0001c0002t0003g0149 a0001c0002t0003g0169 a0001c0005t0001g0219 a0003c0006t0001g0230 a0004c0004t0013g0293	172	298	0.5772	-1	c.330 others(8): Show c.330-463delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	4/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21977486	TA TA	T T	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG02109.hp2 HG02647.hp1 others(2): Show HG01070.hp2 HG02109.hp2 HG02647.hp1 HG03195.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0145 a0001c0001t0002g0130 a0001c0001t0002g0131 others(2): Show a0001c0001t0001g0145 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0136 a0001c0001t0002g0166	5	298	0.0168	-1	c.505 others(8): Show c.505+261delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	5/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21979931	CA CA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01081.hp1 HG01081.hp2 others(28): Show HG00735.hp1 HG01081.hp1 HG01081.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp2 HG01256.hp1 HG01433.hp1 HG01516.hp1 HG01517.hp2 HG02027.hp1 HG02055.hp1 HG02257.hp1 HG02293.hp1 HG02486.hp1 HG02615.hp1 HG02630.hp2 HG02886.hp2 HG02965.hp1 HG02976.hp2 HG03098.hp1 HG03130.hp1 HG03486.hp1 NA18906.hp1 NA18947.hp1 NA18982.hp1 NA18992.hp1 NA18997.hp1 NA19030.hp1 NA19091.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0002t0003	a0001c0001t0001g0041 a0001c0001t0001g0117 a0001c0001t0001g0188 others(28): Show a0001c0001t0001g0041 a0001c0001t0001g0117 a0001c0001t0001g0188 a0001c0001t0001g0228 a0001c0001t0002g0210 a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0011 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0159 a0001c0001t0003g0215 a0001c0001t0004g0028 a0001c0001t0004g0062 a0001c0001t0004g0063 a0001c0001t0004g0064 a0001c0001t0004g0066 a0001c0001t0004g0067 a0001c0001t0004g0068 a0001c0001t0004g0069 a0001c0001t0004g0071 a0001c0001t0004g0074 a0001c0001t0004g0102 a0001c0001t0004g0103 a0001c0001t0004g0104 a0001c0001t0004g0144 a0001c0001t0004g0174 a0001c0002t0003g0149 a0001c0002t0003g0169	31	298	0.1040	-1	c.750 others(8): Show c.750+980delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21979953	TA TA	T T	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02647.hp1 HG03195.hp2 HG02109.hp2 HG02647.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0136 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0136	3	298	0.0101	-1	c.750 others(8): Show c.750+998delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21981376	AG AG	A A	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0047 a0001c0001t0009g0047	1	298	0.0034	-1	c.750 others(9): Show c.750+2416delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21982051	AG AG	A A	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0282 a0001c0001t0005g0282	1	298	0.0034	-1	c.751 others(9): Show c.751-2251delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21982336	CA CA	C C	intron_variant intron_variant	MODIFIER	HG02976.hp2 NA18951.hp2 NA19086.hp1 HG02976.hp2 NA18951.hp2 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0117 a0001c0001t0001g0227 a0001c0001t0005g0275 a0001c0001t0001g0117 a0001c0001t0001g0227 a0001c0001t0005g0275	3	298	0.0101	-1	c.751 others(9): Show c.751-1948delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21983035	CT CT	C C	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0282 a0001c0001t0005g0282	1	298	0.0034	-1	c.751 others(9): Show c.751-1262delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21983322	TG TG	T T	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0282 a0001c0001t0005g0282	1	298	0.0034	-1	c.751 others(8): Show c.751-979delG	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21983402	AT AT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02970.hp2 HG01891.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0003 a0001c0005t0001 a0001c0001t0003 a0001c0005t0001	a0001c0001t0003g0285 a0001c0005t0001g0219 a0001c0001t0003g0285 a0001c0005t0001g0219	2	298	0.0067	-1	c.751 others(8): Show c.751-892delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	7/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21984513	GT GT	G G	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0047 a0001c0001t0009g0047	1	298	0.0034	-1	c.865 others(8): Show c.865+100delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	8/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21984585	GC GC	G G	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0282 a0001c0001t0005g0282	1	298	0.0034	-1	c.865 others(8): Show c.865+169delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	8/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21984866	GC GC	G G	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0282 a0001c0001t0005g0282	1	298	0.0034	-1	c.866 others(8): Show c.866-273delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	8/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21985044	CT CT	C C	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0282 a0001c0001t0005g0282	1	298	0.0034	-1	c.866 others(7): Show c.866-95delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	8/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21986230	TC TC	T T	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0282 a0001c0001t0005g0282	1	298	0.0034	-1	c.945 others(9): Show c.945+1010delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	9/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21986347	CA CA	C C	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00735.hp2 HG01070.hp2 others(14): Show HG00544.hp2 HG00735.hp2 HG01070.hp2 HG01361.hp2 HG01978.hp1 HG03453.hp1 HG03927.hp1 HG04115.hp1 HG06807.hp2 NA18951.hp1 NA18973.hp1 NA19001.hp1 NA19009.hp1 NA19010.hp1 NA19067.hp1 NA19078.hp2 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0002 a0001c0001t0001g0022 a0001c0001t0001g0038 others(14): Show a0001c0001t0001g0002 a0001c0001t0001g0022 a0001c0001t0001g0038 a0001c0001t0001g0045 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0222 a0001c0001t0001g0234 a0001c0001t0002g0126 a0001c0001t0002g0166 a0001c0001t0002g0182 a0001c0001t0002g0194 a0001c0001t0002g0199 a0001c0001t0002g0202 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0003g0128	17	298	0.0571	-1	c.945 others(9): Show c.945+1152delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	9/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21986995	GT GT	G G	intron_variant intron_variant	MODIFIER	NA19077.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0250 a0001c0001t0001g0250	1	298	0.0034	-1	c.945 others(9): Show c.945+1789delT	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	9/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21987253	TC TC	T T	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0047 a0001c0001t0009g0047	1	298	0.0034	-1	c.945 others(9): Show c.945+2033delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	9/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21988320	AC AC	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0180 a0001c0001t0002g0180	1	298	0.0034	-1	c.945 others(9): Show c.945+3100delC	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	9/10	INFO_REALIGN_3_PRIME	chrX	TogoVar
SMS_chrX_21935709_21999837	21988662	CA CA	C C	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0166 a0001c0001t0002g0166	1	298	0.0034	-1	c.945 others(9): Show c.945+3469delA	SMS	ENSG00000102172.16	transcript	ENST00000404933.7	protein_coding	9/10	INFO_REALIGN_3_PRIME	chrX	TogoVar

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