Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
SPANXA2_chrX_141584708_141595762	141594122	GT GT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.34 others(6): Show c.3415delT		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3361		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594130	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG01168.hp2 HG00609.hp1 HG01168.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	185	0.0108	-1	c.34 others(6): Show c.3423delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3369		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594199	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18955.hp1 NA18968.hp2 NA18955.hp1 NA18968.hp2	a0001 a0012 a0001 a0012	a0001c0001 a0012c0009 a0001c0001 a0012c0009	a0001c0001t0001 a0012c0009t0001 a0001c0001t0001 a0012c0009t0001	a0001c0001t0001g0001 a0012c0009t0001g0013 a0001c0001t0001g0001 a0012c0009t0001g0013	2	185	0.0108	-1	c.34 others(6): Show c.3492delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3438		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594288	GA GA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.35 others(6): Show c.3581delA		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3527		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594371	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.36 others(6): Show c.3664delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3610		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594379	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18968.hp2 NA18965.hp1 NA18968.hp2	a0001 a0013 a0001 a0013	a0001c0001 a0013c0007 a0001c0001 a0013c0007	a0001c0001t0001 a0013c0007t0007 a0001c0001t0001 a0013c0007t0007	a0001c0001t0001g0001 a0013c0007t0007g0017 a0001c0001t0001g0001 a0013c0007t0007g0017	2	185	0.0108	-1	c.36 others(6): Show c.3672delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3618		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594414	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.37 others(6): Show c.3707delT		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3653		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594421	GC GC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.37 others(6): Show c.3714delC		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3660		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594427	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.37 others(6): Show c.3720delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3666		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594603	TA TA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0004 a0004c0006t0004	a0004c0006t0004g0010 a0004c0006t0004g0010	1	185	0.0054	-1	c.38 others(6): Show c.3896delA		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3842		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594732	GA GA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0011 a0015c0016t0001g0011	1	185	0.0054	-1	c.40 others(6): Show c.4025delA		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3971		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594735	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.40 others(6): Show c.4028delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					3974		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594777	GA GA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.40 others(6): Show c.4070delA		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4016		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594798	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.40 others(6): Show c.4091delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4037		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594800	GC GC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.40 others(6): Show c.4093delC		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4039		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594818	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.41 others(6): Show c.4111delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4057		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594827	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.41 others(6): Show c.4120delC		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4066		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594925	CA CA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp2 HG01069.hp1 HG01168.hp1 others(38): Show HG00733.hp2 HG01069.hp1 HG01168.hp1 HG01168.hp2 HG01346.hp2 HG01934.hp1 HG02280.hp1 HG02683.hp1 HG02698.hp1 HG02818.hp1 HG03486.hp1 HG03491.hp1 HG04184.hp2 HG04228.hp1 NA18944.hp1 NA18960.hp1 NA18963.hp2 NA18965.hp1 NA18973.hp2 NA18975.hp2 NA18986.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18998.hp1 NA19000.hp1 NA19007.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19057.hp1 NA19063.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19084.hp2 NA19088.hp1	a0001 a0002 a0004 others(4): Show a0001 a0002 a0004 a0007 a0009 a0013 a0015	a0001c0001 a0002c0002 a0004c0018 others(4): Show a0001c0001 a0002c0002 a0004c0018 a0007c0014 a0009c0011 a0013c0007 a0015c0016	a0001c0001t0001 a0002c0002t0001 a0004c0018t0004 others(4): Show a0001c0001t0001 a0002c0002t0001 a0004c0018t0004 a0007c0014t0006 a0009c0011t0001 a0013c0007t0007 a0015c0016t0001	a0001c0001t0001g0001 a0001c0001t0001g0014 a0002c0002t0001g0001 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0014 a0002c0002t0001g0001 a0004c0018t0004g0009 a0007c0014t0006g0018 a0009c0011t0001g0006 a0013c0007t0007g0017 a0015c0016t0001g0011	41	185	0.2216	-1	c.42 others(6): Show c.4218delA		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4164		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594966	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0011 a0015c0016t0001g0011	1	185	0.0054	-1	c.42 others(6): Show c.4259delC		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4205		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141594976	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0011 a0015c0016t0001g0011	1	185	0.0054	-1	c.42 others(6): Show c.4269delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4215		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595052	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.43 others(6): Show c.4345delC		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4291		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595174	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.44 others(6): Show c.4467delC		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4413		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595262	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.45 others(6): Show c.4555delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4501		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595317	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19077.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.46 others(6): Show c.4610delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4556		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595385	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.46 others(6): Show c.4678delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4624		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595409	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0011 a0015c0016t0001g0011	1	185	0.0054	-1	c.47 others(6): Show c.4702delG		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4648		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595561	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.48 others(6): Show c.4854delT		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4800		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595616	CA CA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG02818.hp1 HG02280.hp1 HG02818.hp1	a0004 a0007 a0004 a0007	a0004c0018 a0007c0014 a0004c0018 a0007c0014	a0004c0018t0004 a0007c0014t0006 a0004c0018t0004 a0007c0014t0006	a0004c0018t0004g0009 a0007c0014t0006g0018 a0004c0018t0004g0009 a0007c0014t0006g0018	2	185	0.0108	-1	c.49 others(6): Show c.4909delA		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4855		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595623	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.49 others(6): Show c.4916delT		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4862		chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141595745	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.50 others(6): Show c.5038delT		SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding					4984		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	140997659	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18985.hp1 NA18985.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	301	0.0033	-1	c.-50 others(6): Show c.-5034delG		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					4934		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	140997949	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02080.hp2 HG03831.hp1 NA19000.hp1 others(1): Show HG02080.hp2 HG03831.hp1 NA19000.hp1 NA19054.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0004 a0001c0001 a0007c0004	a0001c0001t0001 a0007c0004t0004 a0001c0001t0001 a0007c0004t0004	a0001c0001t0001g0001 a0007c0004t0004g0015 a0001c0001t0001g0001 a0007c0004t0004g0015	4	301	0.0133	-1	c.-47 others(6): Show c.-4744delT		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					4644		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	140998290	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00639.hp1 HG01069.hp1 others(13): Show HG00423.hp1 HG00639.hp1 HG01069.hp1 HG01891.hp2 HG04228.hp1 NA18941.hp1 NA18955.hp1 NA18964.hp2 NA18966.hp1 NA18980.hp1 NA18982.hp1 NA19003.hp2 NA19063.hp1 NA19079.hp1 NA19081.hp1 NA19086.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0008	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0008c0009	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0003c0003t0001 a0008c0009t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(8): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0026 a0001c0001t0002g0022 a0002c0002t0001g0001 a0002c0002t0001g0003 a0002c0002t0001g0007 a0003c0003t0001g0001 a0008c0009t0001g0001	16	301	0.0532	-1	c.-44 others(6): Show c.-4403delA		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					4303		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	140998348	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	301	0.0033	-1	c.-43 others(6): Show c.-4345delC		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					4245		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	140998855	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	301	0.0033	-1	c.-38 others(6): Show c.-3838delC		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					3738		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	140998910	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	301	0.0033	-1	c.-37 others(6): Show c.-3783delT		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					3683		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	140999821	TG TG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0022 a0001c0001t0002g0022	1	301	0.0033	-1	c.-28 others(6): Show c.-2872delG		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					2772		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141000088	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00423.hp1 others(210): Show HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00558.hp1 HG00558.hp2 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01952.hp1 HG01978.hp1 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp2 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp2 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18970.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18976.hp1 NA18980.hp1 NA18981.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp2 NA18993.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA20300.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0005 a0007 a0008 a0009 a0011 a0012 a0013	a0001c0001 a0002c0002 a0003c0003 others(9): Show a0001c0001 a0002c0002 a0003c0003 a0003c0007 a0004c0013 a0005c0012 a0007c0004 a0008c0009 a0009c0011 a0011c0006 a0012c0005 a0013c0014	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(10): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0003c0003t0001 a0003c0007t0001 a0004c0013t0001 a0005c0012t0001 a0007c0004t0004 a0008c0009t0001 a0009c0011t0001 a0011c0006t0006 a0012c0005t0003 a0013c0014t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(30): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0002g0022 a0002c0002t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0003 a0002c0002t0001g0004 a0002c0002t0001g0006 a0002c0002t0001g0009 a0002c0002t0001g0024 a0002c0002t0001g0025 a0003c0003t0001g0001 a0003c0007t0001g0001 a0004c0013t0001g0001 a0005c0012t0001g0001 a0007c0004t0004g0015 a0008c0009t0001g0001 a0009c0011t0001g0009 a0011c0006t0006g0010 a0012c0005t0003g0010 a0013c0014t0001g0014	213	301	0.7076	-1	c.-26 others(6): Show c.-2605delA		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					2505		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141000520	TG TG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0007 a0007	a0007c0004 a0007c0004	a0007c0004t0004 a0007c0004t0004	a0007c0004t0004g0015 a0007c0004t0004g0015	1	301	0.0033	-1	c.-21 others(6): Show c.-2173delG		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					2073		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141001226	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	301	0.0033	-1	c.-14 others(6): Show c.-1467delT		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					1367		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141002512	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02080.hp2 HG03831.hp1 NA18965.hp1 others(1): Show HG02080.hp2 HG03831.hp1 NA18965.hp1 NA19054.hp2	a0001 a0007 a0012 a0001 a0007 a0012	a0001c0001 a0007c0004 a0012c0005 a0001c0001 a0007c0004 a0012c0005	a0001c0001t0001 a0007c0004t0004 a0012c0005t0003 a0001c0001t0001 a0007c0004t0004 a0012c0005t0003	a0001c0001t0001g0001 a0007c0004t0004g0015 a0012c0005t0003g0010 a0001c0001t0001g0001 a0007c0004t0004g0015 a0012c0005t0003g0010	4	301	0.0133	-1	c.-18 others(5): Show c.-181delC		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					81		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141002676	GA GA	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18961.hp1 NA18961.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0006 a0011c0006t0006	a0011c0006t0006g0010 a0011c0006t0006g0010	1	301	0.0033	-1	c.-16 others(4): Show c.-16delA		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding	1/2				16	INFO_REALIGN_3_PRIME	chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141002734	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA18961.hp1 NA18961.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0006 a0011c0006t0006	a0011c0006t0006g0010 a0011c0006t0006g0010	1	301	0.0033	-1	c.45d others(3): Show c.45delC	p.Cys others(4): Show p.Cys16fs	SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding	1/2	145/466	45/312	15/103		INFO_REALIGN_3_PRIME	chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141004148	CA CA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0007 a0007	a0007c0004 a0007c0004	a0007c0004t0004 a0007c0004t0004	a0007c0004t0004g0015 a0007c0004t0004g0015	1	301	0.0033	-1	c.49 others(5): Show c.497delA		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					443		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141005094	GT GT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(266): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02895.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18952.hp1 NA18954.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18976.hp1 NA18976.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19091.hp1 NA20300.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0005 a0007 a0008 a0010 a0011 a0012 a0013	a0001c0001 a0002c0002 a0003c0003 others(9): Show a0001c0001 a0002c0002 a0003c0003 a0003c0007 a0004c0013 a0005c0012 a0007c0004 a0008c0009 a0010c0008 a0011c0006 a0012c0005 a0013c0014	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(11): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 a0003c0003t0001 a0003c0007t0001 a0004c0013t0001 a0005c0012t0001 a0007c0004t0004 a0008c0009t0001 a0010c0008t0005 a0011c0006t0006 a0012c0005t0003 a0013c0014t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(32): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0002g0022 a0002c0002t0001g0001 a0002c0002t0001g0002 a0002c0002t0001g0003 a0002c0002t0001g0004 a0002c0002t0001g0006 a0002c0002t0001g0007 a0002c0002t0001g0024 a0002c0002t0001g0025 a0002c0002t0001g0027 a0002c0002t0002g0003 a0003c0003t0001g0001 a0003c0007t0001g0001 a0004c0013t0001g0001 a0005c0012t0001g0001 a0007c0004t0004g0015 a0008c0009t0001g0001 a0010c0008t0005g0003 a0011c0006t0006g0010 a0012c0005t0003g0010 a0013c0014t0001g0014	269	301	0.8937	-1	c.14 others(6): Show c.1443delT		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					1389		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141006954	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	301	0.0033	-1	c.33 others(6): Show c.3303delT		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					3249		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141007144	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	301	0.0033	-1	c.34 others(6): Show c.3493delG		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					3439		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141007548	TA TA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	301	0.0033	-1	c.38 others(6): Show c.3897delA		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					3843		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141007870	CA CA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03831.hp1 NA18946.hp1 HG03831.hp1 NA18946.hp1	a0002 a0007 a0002 a0007	a0002c0002 a0007c0004 a0002c0002 a0007c0004	a0002c0002t0001 a0007c0004t0004 a0002c0002t0001 a0007c0004t0004	a0002c0002t0001g0007 a0007c0004t0004g0015 a0002c0002t0001g0007 a0007c0004t0004g0015	2	301	0.0066	-1	c.42 others(6): Show c.4219delA		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					4165		chrX	TogoVar
SPANXB1_chrX_140997594_141008706	141007911	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	301	0.0033	-1	c.42 others(6): Show c.4260delC		SPANXB1	ENSG00000227234.2	transcript	ENST00000449283.2	protein_coding					4206		chrX	TogoVar

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