Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
SPANXN2_chrX_143706955_143725752	143711880	TC TC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0087 a0006c0007t0001g0087	1	336	0.0030	-1	c.15 others(5): Show c.154delG		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					74		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143712149	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18955.hp1 NA18955.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0087 a0006c0007t0001g0087	1	336	0.0030	-1	c.428 others(4): Show c.428delC	p.Ser others(5): Show p.Ser143fs	SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	2/2	512/707	428/543	143/180			chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143712218	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA18955.hp1 NA18955.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0087 a0006c0007t0001g0087	1	336	0.0030	-1	c.359 others(4): Show c.359delG	p.Gly others(5): Show p.Gly120fs	SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	2/2	443/707	359/543	120/180			chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143715666	AG AG	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00438.hp2 HG00597.hp2 others(49): Show HG00423.hp1 HG00438.hp2 HG00597.hp2 HG00735.hp1 HG01175.hp1 HG01175.hp2 HG01346.hp2 HG01978.hp2 HG01993.hp1 HG02040.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02257.hp1 HG02273.hp2 HG02622.hp1 HG02735.hp1 HG03654.hp1 HG03834.hp1 HG03942.hp1 NA18942.hp1 NA18943.hp1 NA18953.hp1 NA18964.hp2 NA18965.hp1 NA18979.hp2 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp1 NA18992.hp2 NA18999.hp1 NA19002.hp1 NA19004.hp1 NA19009.hp1 NA19054.hp2 NA19055.hp1 NA19057.hp1 NA19062.hp1 NA19063.hp1 NA19074.hp2 NA19077.hp1 NA19080.hp1 NA19084.hp1 NA19088.hp1 NA19090.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0002c0005	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0002c0005t0001	a0001c0001t0001g0007 a0001c0002t0001g0031 a0001c0002t0001g0096 others(14): Show a0001c0001t0001g0007 a0001c0002t0001g0031 a0001c0002t0001g0096 a0001c0003t0001g0003 a0001c0003t0001g0013 a0001c0003t0001g0021 a0001c0003t0001g0032 a0001c0003t0001g0066 a0001c0003t0001g0067 a0001c0003t0001g0071 a0001c0003t0001g0093 a0001c0003t0001g0095 a0001c0003t0001g0097 a0001c0003t0001g0099 a0001c0003t0001g0100 a0001c0003t0001g0104 a0002c0005t0001g0033	52	336	0.1548	-1	c.79- others(8): Show c.79-3168delC		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	1/1						chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143718497	AG AG	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02622.hp1 NA18522.hp1 others(1): Show HG00735.hp1 HG02622.hp1 NA18522.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0098 a0001c0003t0001g0032 a0001c0003t0001g0099 a0001c0001t0001g0098 a0001c0003t0001g0032 a0001c0003t0001g0099	4	336	0.0119	-1	c.78+ others(8): Show c.78+2093delC		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	1/1						chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143718569	GA GA	G G	intron_variant intron_variant	MODIFIER	NA18949.hp1 NA19066.hp1 NA18949.hp1 NA19066.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0029 a0001c0002t0001g0029	2	336	0.0060	-1	c.78+ others(8): Show c.78+2021delT		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	1/1						chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143718740	TC TC	T T	intron_variant intron_variant	MODIFIER	NA19054.hp2 NA19054.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0100 a0001c0003t0001g0100	1	336	0.0030	-1	c.78+ others(8): Show c.78+1850delG		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	1/1						chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143719117	TC TC	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0034 a0002c0005t0001g0034	1	336	0.0030	-1	c.78+ others(8): Show c.78+1473delG		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	1/1						chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143720597	AT AT	A A	frameshift_variant frameshift_variant	HIGH	HG01978.hp1 HG01978.hp1	a0004 a0004	a0004c0011 a0004c0011	a0004c0011t0001 a0004c0011t0001	a0004c0011t0001g0110 a0004c0011t0001g0110	1	336	0.0030	-1	c.71d others(3): Show c.71delA	p.Asn others(4): Show p.Asn24fs	SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding	1/2	155/707	71/543	24/180			chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143721213	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG00544.hp2 HG00642.hp1 others(103): Show HG00323.hp2 HG00544.hp2 HG00642.hp1 HG00741.hp2 HG01070.hp1 HG01071.hp2 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp2 HG01167.hp1 HG01169.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp1 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01981.hp2 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp2 HG02109.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03831.hp1 HG03927.hp1 HG04115.hp1 HG04228.hp1 HG06807.hp1 NA18906.hp1 NA18941.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18963.hp1 NA18964.hp1 NA18967.hp1 NA18969.hp1 NA18993.hp1 NA18997.hp2 NA19030.hp2 NA19054.hp1 NA19065.hp2 NA19066.hp1 NA19075.hp1 NA19081.hp2 NA19086.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0006	a0001c0001 a0001c0002 a0001c0008 others(4): Show a0001c0001 a0001c0002 a0001c0008 a0002c0005 a0002c0006 a0004c0011 a0006c0007	a0001c0001t0001 a0001c0002t0001 a0001c0008t0001 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0008t0001 a0002c0005t0001 a0002c0006t0001 a0004c0011t0001 a0006c0007t0001	a0001c0001t0001g0005 a0001c0001t0001g0020 a0001c0001t0001g0041 others(35): Show a0001c0001t0001g0005 a0001c0001t0001g0020 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0074 a0001c0001t0001g0080 a0001c0001t0001g0088 a0001c0002t0001g0002 a0001c0002t0001g0012 a0001c0002t0001g0017 a0001c0002t0001g0029 a0001c0002t0001g0030 a0001c0002t0001g0075 a0001c0002t0001g0076 a0001c0002t0001g0077 a0001c0002t0001g0078 a0001c0002t0001g0079 a0001c0002t0001g0081 a0001c0002t0001g0082 a0001c0002t0001g0083 a0001c0002t0001g0084 a0001c0002t0001g0086 a0001c0002t0001g0089 a0001c0002t0001g0090 a0001c0002t0001g0091 a0001c0002t0001g0101 a0001c0008t0001g0085 a0002c0005t0001g0015 a0002c0005t0001g0016 a0002c0005t0001g0018 a0002c0005t0001g0033 a0002c0005t0001g0034 a0002c0005t0001g0035 a0002c0005t0001g0036 a0002c0006t0001g0037 a0004c0011t0001g0110 a0006c0007t0001g0087	106	336	0.3155	-1	c.-54 others(5): Show c.-546delG		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					462		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143721612	GA GA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp2 HG01167.hp1 HG01169.hp2 others(10): Show HG01123.hp2 HG01167.hp1 HG01169.hp2 HG02257.hp1 HG02280.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp2 HG02970.hp2 HG03209.hp1 HG03453.hp1 HG03540.hp1 NA19030.hp2	a0002 a0002	a0002c0005 a0002c0006 a0002c0005 a0002c0006	a0002c0005t0001 a0002c0006t0001 a0002c0005t0001 a0002c0006t0001	a0002c0005t0001g0015 a0002c0005t0001g0016 a0002c0005t0001g0018 others(5): Show a0002c0005t0001g0015 a0002c0005t0001g0016 a0002c0005t0001g0018 a0002c0005t0001g0033 a0002c0005t0001g0034 a0002c0005t0001g0035 a0002c0005t0001g0036 a0002c0006t0001g0037	13	336	0.0387	-1	c.-94 others(5): Show c.-945delT		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					861		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143722739	AC AC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0080 a0001c0001t0001g0080	1	336	0.0030	-1	c.-20 others(6): Show c.-2072delG		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					1988		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143722771	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0003 a0001c0003t0001g0003	1	336	0.0030	-1	c.-21 others(6): Show c.-2104delA		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					2020		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143723191	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0003 a0001c0003t0001g0003	1	336	0.0030	-1	c.-25 others(6): Show c.-2524delT		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					2440		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143723259	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0003 a0001c0003t0001g0003	1	336	0.0030	-1	c.-25 others(6): Show c.-2592delG		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					2508		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143725161	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0003 a0001c0003t0001g0003	1	336	0.0030	-1	c.-44 others(6): Show c.-4494delA		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					4410		chrX	TogoVar
SPANXN2_chrX_143706955_143725752	143725399	AC AC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0003 a0001c0003t0001g0003	1	336	0.0030	-1	c.-47 others(6): Show c.-4732delG		SPANXN2	ENSG00000268988.2	transcript	ENST00000598475.2	protein_coding					4648		chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143507608	TG TG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0089 a0005c0005t0001g0089	1	349	0.0029	-1	c.12 others(6): Show c.1206delC		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding					1126		chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143508226	CG CG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0089 a0005c0005t0001g0089	1	349	0.0029	-1	c.58 others(5): Show c.588delC		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding					508		chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143508333	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0089 a0005c0005t0001g0089	1	349	0.0029	-1	c.48 others(5): Show c.481delA		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding					401		chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143510711	AC AC	A A	intron_variant intron_variant	MODIFIER	NA18987.hp1 NA18987.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0073 a0001c0001t0001g0073	1	349	0.0029	-1	c.79- others(8): Show c.79-1550delG		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding	1/1						chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143513102	CT CT	C C	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0083 a0001c0001t0001g0083	1	349	0.0029	-1	c.79- others(8): Show c.79-3941delA		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding	1/1						chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143515995	AT AT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(276): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02300.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02723.hp1 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02922.hp1 HG02965.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03490.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18975.hp1 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18987.hp1 NA18987.hp2 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp2 NA19090.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0003c0003t0001 a0004c0004t0001 a0005c0005t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(72): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0002g0094 a0002c0002t0001g0032 a0002c0002t0001g0038 a0003c0003t0001g0011 a0003c0003t0001g0042 a0004c0004t0001g0018 a0005c0005t0001g0089	279	349	0.7994	-1	c.78+ others(8): Show c.78+1318delA		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding	1/1						chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143516745	CA CA	C C	intron_variant intron_variant	MODIFIER	NA18998.hp1 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0059	1	349	0.0029	-1	c.78+ others(7): Show c.78+568delT		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding	1/1						chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143517060	TG TG	T T	intron_variant intron_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	349	0.0029	-1	c.78+ others(7): Show c.78+253delC		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding	1/1						chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143520756	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0083 a0001c0001t0001g0083	1	349	0.0029	-1	c.-33 others(6): Show c.-3366delA		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding					3282		chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143520855	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19067.hp1 NA19067.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0094 a0001c0001t0002g0094	1	349	0.0029	-1	c.-34 others(6): Show c.-3465delT		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding					3381		chrX	TogoVar
SPANXN3_chrX_143503735_143522475	143521960	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG00735.hp2 HG02293.hp2 others(1): Show HG00642.hp1 HG00735.hp2 HG02293.hp2 HG02886.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0002c0002t0001g0027 a0001c0001t0001g0004 a0001c0001t0001g0005 a0002c0002t0001g0027	4	349	0.0115	-1	c.-45 others(6): Show c.-4570delA		SPANXN3	ENSG00000189252.4	transcript	ENST00000370503.2	protein_coding					4486		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143021104	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-49 others(6): Show c.-4910delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					4823		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143021272	AC AC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-47 others(6): Show c.-4742delC		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					4655		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143021481	AC AC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-45 others(6): Show c.-4533delC		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					4446		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143021585	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-44 others(6): Show c.-4429delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					4342		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143023246	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-27 others(6): Show c.-2768delT		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					2681		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143023335	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-26 others(6): Show c.-2679delC		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					2592		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143023544	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-24 others(6): Show c.-2470delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					2383		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143023863	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(336): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0001c0004 a0001c0005 others(4): Show a0001c0001 a0001c0004 a0001c0005 a0002c0002 a0003c0003 a0004c0007 a0005c0006	a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 a0001c0005t0002 a0002c0002t0001 a0003c0003t0002 a0004c0007t0003 a0005c0006t0002	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(124): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0033 a0001c0001t0001g0036 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0069 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0107 a0001c0001t0002g0001 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0006 a0001c0001t0002g0007 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0013 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0041 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0078 a0001c0001t0002g0081 a0001c0001t0002g0083 a0001c0001t0002g0090 a0001c0001t0002g0093 a0001c0001t0002g0099 a0001c0001t0002g0104 a0001c0001t0002g0105 a0001c0001t0002g0106 a0001c0001t0002g0108 a0001c0001t0002g0109 a0001c0004t0001g0004 a0001c0005t0002g0001 a0002c0002t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0026 a0002c0002t0001g0027 a0003c0003t0002g0029 a0003c0003t0002g0031 a0003c0003t0002g0049 a0003c0003t0002g0070 a0004c0007t0003g0110 a0005c0006t0002g0077	339	343	0.9883	-1	c.-21 others(6): Show c.-2151delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					2064		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024118	GA GA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-18 others(6): Show c.-1896delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1809		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024286	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-17 others(6): Show c.-1728delT		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1641		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024323	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-16 others(6): Show c.-1691delT		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1604		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024414	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-16 others(6): Show c.-1600delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1513		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024592	GA GA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-14 others(6): Show c.-1422delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1335		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024706	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-13 others(6): Show c.-1308delT		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1221		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024831	TG TG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-11 others(6): Show c.-1183delG		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1096		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024859	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-11 others(6): Show c.-1155delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1068		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024888	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-11 others(6): Show c.-1126delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					1039		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143024958	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp1 HG01243.hp1 HG02683.hp1 others(12): Show HG00323.hp1 HG01243.hp1 HG02683.hp1 HG02723.hp1 HG02735.hp1 HG02895.hp1 HG02897.hp2 HG03017.hp1 NA18947.hp2 NA18954.hp1 NA19000.hp1 NA19010.hp2 NA19054.hp2 NA19056.hp1 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(9): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0018 a0001c0001t0001g0050 a0001c0001t0001g0092 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0090 a0001c0001t0002g0099	15	343	0.0437	-1	c.-10 others(6): Show c.-1056delT		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					969		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143025657	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-35 others(5): Show c.-357delA		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					270		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143025888	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.-12 others(5): Show c.-126delC		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding					39		chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143026074	CA CA	C C	frameshift_variant frameshift_variant	HIGH	HG02922.hp2 HG02922.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0003 a0004c0007t0003	a0004c0007t0003g0110 a0004c0007t0003g0110	1	343	0.0029	-1	c.64d others(3): Show c.64delA	p.Arg others(4): Show p.Arg22fs	SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding	1/2	151/452	64/300	22/99		INFO_REALIGN_3_PRIME	chrX	TogoVar
SPANXN4_chrX_143020928_143039311	143026113	AG AG	A A	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01256.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	343	0.0029	-1	c.78+ others(6): Show c.78+24delG		SPANXN4	ENSG00000189326.5	transcript	ENST00000446864.2	protein_coding	1/1					INFO_REALIGN_3_PRIME	chrX	TogoVar

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